HG10008077.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008077.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 19440497 .. 19440838 (-)
Sequence length	342
RNA-Seq Expression	HG10008077.1
Synteny	HG10008077.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACTTCCGGAGGCTTCGTCGGCCATACAAAGAACGGTAAGGCCATCAGTCTTCTTGATGTGAAAGATGTAGCGATCATGAGAATAGGAAGCATTGCTATCATCGTCTCCCTCCTTCATCTTCTCCATGATCTGCCTCGCAATCGCGCTCGCATTCGTCTGTGTGGCGCTGAACTCCGCCAAAACAACGTGTCCTCTGGCGACCATTCCATAAAGAATCCCCATCGCTCCTCTTCACCGCCAAAAATTCTATTGGTTTCGAGACCTCAAAAACGAGCAAAAGAAGAGGAGGTCGGAGGTCGGAGGCCAGAGGCCTCAGGAATCGGAAACCGGAGATAA

mRNA sequence

ATGCTTACTTCCGGAGGCTTCGTCGGCCATACAAAGAACGGTAAGGCCATCAGTCTTCTTGATGTGAAAGATGTAGCGATCATGAGAATAGGAAGCATTGCTATCATCGTCTCCCTCCTTCATCTTCTCCATGATCTGCCTCGCAATCGCGCTCGCATTCGTCTGTGTGGCGCTGAACTCCGCCAAAACAACGTGTCCTCTGGCGACCATTCCATAAAGAATCCCCATCGCTCCTCTTCACCGCCAAAAATTCTATTGGTTTCGAGACCTCAAAAACGAGCAAAAGAAGAGGAGGTCGGAGGTCGGAGGCCAGAGGCCTCAGGAATCGGAAACCGGAGATAA

Coding sequence (CDS)

ATGCTTACTTCCGGAGGCTTCGTCGGCCATACAAAGAACGGTAAGGCCATCAGTCTTCTTGATGTGAAAGATGTAGCGATCATGAGAATAGGAAGCATTGCTATCATCGTCTCCCTCCTTCATCTTCTCCATGATCTGCCTCGCAATCGCGCTCGCATTCGTCTGTGTGGCGCTGAACTCCGCCAAAACAACGTGTCCTCTGGCGACCATTCCATAAAGAATCCCCATCGCTCCTCTTCACCGCCAAAAATTCTATTGGTTTCGAGACCTCAAAAACGAGCAAAAGAAGAGGAGGTCGGAGGTCGGAGGCCAGAGGCCTCAGGAATCGGAAACCGGAGATAA

Protein sequence

MLTSGGFVGHTKNGKAISLLDVKDVAIMRIGSIAIIVSLLHLLHDLPRNRARIRLCGAELRQNNVSSGDHSIKNPHRSSSPPKILLVSRPQKRAKEEEVGGRRPEASGIGNRR

Homology

[Close]

BLAST of HG10008077.1 vs. NCBI nr
Match: KYP44980.1 (hypothetical protein KK1_033500, partial [Cajanus cajan])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 2  LTSGGFVGHTKNGKAISLLDVKDVAIMRIGSIAIIV---SLLHLLHDLPRNRARIRLCGA 61
          LTS   + HTKNG++I  LD++++AI+R G+IAII+    L+ L   L   R  I L G 
Sbjct: 3  LTSKCIISHTKNGESICPLDMENIAIVRKGNIAIIIVITPLIDLAKYLFGYRTSIALAGV 62

Query: 62 ELRQNNVSSGDHSIKNPH 77
          EL QNN+   +H I+ PH
Sbjct: 63 ELSQNNLPPSNHCIQYPH 80

[Close]

BLAST of HG10008077.1 vs. NCBI nr
Match: KOM46651.1 (hypothetical protein LR48_Vigan07g035500 [Vigna angularis])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 3   TSGGFVGHTKNGKAISLLDVKDVAIMRIGSIAIIVSLLHLLHDLPRNRARIRLCGAELRQ 62
           T+G  V H +NG+ I   +V+DVAI+R+G++ ++V+   LL +LPR+ A +    A LRQ
Sbjct: 87  TAGSVVSHAENGEPIGAFNVEDVAILRVGNVRVVVA-WDLLENLPRDCAGVGGGAAVLRQ 146

Query: 63  NNVSSGDHSIKNPH 77
           ++ S+    ++NPH
Sbjct: 147 HHRSATYQRVQNPH 159

[Close]

BLAST of HG10008077.1 vs. ExPASy TrEMBL
Match: A0A151RR05 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033500 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 2  LTSGGFVGHTKNGKAISLLDVKDVAIMRIGSIAIIV---SLLHLLHDLPRNRARIRLCGA 61
          LTS   + HTKNG++I  LD++++AI+R G+IAII+    L+ L   L   R  I L G 
Sbjct: 3  LTSKCIISHTKNGESICPLDMENIAIVRKGNIAIIIVITPLIDLAKYLFGYRTSIALAGV 62

Query: 62 ELRQNNVSSGDHSIKNPH 77
          EL QNN+   +H I+ PH
Sbjct: 63 ELSQNNLPPSNHCIQYPH 80

[Close]

BLAST of HG10008077.1 vs. ExPASy TrEMBL
Match: A0A0L9UV91 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g035500 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 3   TSGGFVGHTKNGKAISLLDVKDVAIMRIGSIAIIVSLLHLLHDLPRNRARIRLCGAELRQ 62
           T+G  V H +NG+ I   +V+DVAI+R+G++ ++V+   LL +LPR+ A +    A LRQ
Sbjct: 87  TAGSVVSHAENGEPIGAFNVEDVAILRVGNVRVVVA-WDLLENLPRDCAGVGGGAAVLRQ 146

Query: 63  NNVSSGDHSIKNPH 77
           ++ S+    ++NPH
Sbjct: 147 HHRSATYQRVQNPH 159

The following BLAST results are available for this feature:

BLAST of HG10008077.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP44980.1	3.2e-05	44.87	hypothetical protein KK1_033500, partial [Cajanus cajan]	[more]
KOM46651.1	6.1e-04	39.19	hypothetical protein LR48_Vigan07g035500 [Vigna angularis]	[more]

BLAST of HG10008077.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008077.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151RR05	1.6e-05	44.87	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_033500 PE=4 S...	[more]
A0A0L9UV91	2.9e-04	39.19	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g035500 PE...	[more]

BLAST of HG10008077.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10008077	HG10008077	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10008077.1-cds	HG10008077.1-cds-Chr10:19440497..19440838	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10008077.1	HG10008077.1-protein	polypeptide