HG10006645.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006645.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 20656901 .. 20659879 (-)
Sequence length	447
RNA-Seq Expression	HG10006645.1
Synteny	HG10006645.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTGGTTACTTTGAGTTGAATGATACTTCTGTGTCTAATGACTTCACAAAGGAGAAGTTGGAACTTGGAAGGGGAAGAGTTGTGTGTGGAAGGTGATGCAGTAGTTTGATATGAGTCAAGAATGCCTATGCAGAATCCAAAATTGGTTTAATCACAAAAGGTTGGTTGTAGCTATAAATCTGTTTTGGTCCAACAAAAGGTTACTTTTGCTGGAGGCTAATCCGAGTTAGAACACCTTTAGTTTTAGATATTGCTGCACAACAGTCTTGGTTCAGGGTGTGAGCCAATGCATGGTGGTAGTCTTTGCTCTACAAGATATTATAGATGTGGTGATTTCCTTTCGTTACCCTTGGATAACTCCTAGGTCCTTATCTACATTTCCAACTTCAAAAGAACTAAATCAAGAAGTTAGGGCCGGAGAAGCTTCTGCTAGGCATACTACAATCCAATACAAGTCGACTTCTTACTGTTCAAAAGGAAGAACAGTAGATAGTGATTTTATATTGGCTCCATTGAGCCTTAACACAGTGGGTTTTGGATTAAATTTGTAGTTGTGGAGCTACTAGATGAACTACAATTACATGAGGCTGTCATCATCTTCAAGATTGACTTTGAATGAGGGTATCATTATCATCAGTGTTACCATAAGCACTCTGCACTCATACATGGAGCAGTTCTCATCTTGAAGATTCATATCAAAGAACGGAATAACCTGATTTGCGTAAGATTGAGAACGTGCCTTAAACCGCCTCCTGCACTTATCAAGAGCACTATAAATTTTAGGGCACCGGTGGAGCCACTTTTGGGCCCAGCGGGGCATGTGCCCCCTCCCCCTTCCCTTTAGAAAGTAATAGTGTAAAATTGATTTTGGTCATCTTTAAACTCGTTGTTTTGAAACAAATATACATATGAACTTCTTTTTCATGTTGTTTCTTTTTTTTTTTTTAAAAAAAAAAACACTTATCTCATTGGAAATCTACAAGTTATCTCTAATTTAAGCTGGGAACTCTATTCCCTTTATTTAATTTGTAGATAATGTTTATTAGGTTTCTTGTTTTATTTTAGTATCTTTTTTATTTATGGTGTTTTTTTCCTTATATAAGTACAAGTTAAAAATTAAAATGGATATCTTTATTTTAAATTTAAATTATGTAAAATTTTCTTTAATGGCATAATAAACTATAATTCTGACTGAAAAAAGACTTCTAAATATTTGTGGAGTTCTAAATTATGATTTTCTTCCTTTGTATCCACATATGGTCATCCTTTTTGTTTTATGGACTTATCAAACTTATAAATATATGTAGTCATATTTTCTAAATAAACTAATACTGTGCATAACAGCTTGATATAGTATGAGTAATCAATATAACTTTGATTGGAATGTTAATAAAATTACATTTCATGTCTAAATTTATAATTATATCAATTTGTGCCCCTATTCGGCACTGTTTTTGGATCATGTTGTTTGGCTTGACCAATGACCAATCAGCTATCAAATATCTCATGGACATATTCAGATAGTTCCTTTCCAAATTTACTCTAGTGTGTATTGACCGCATGCTTGTTTACTATACTGGCATTTGTTATATGTTTTAGAGTGTGTTTGGTTTAACTCTTCAAGTGTTTAATTTTGAAAATAAGTTATTTTGGAAAAAATTGAAGTGTTTGGTAACTGCTCAAAATAGCTTTTGGAAACACTTTGAAAGTGTATTTTAAACCGTTTTTTTTTTTTTTTATCAAAAGAGGACTTTGTTGAAAAACATTTTTTTATCTAGTCCATCCAAACAAGCCCTTAACTTCTTCATAAATATGCTGGTGGCTAGTACCAAGCTCTACGCTTCTTCACACCCTCAGATTTTTTATTTAGGTGATGTGGTGTCTTAATAAGGTGACTGTTCATGACCATAAAATCCAAAATATGTTGAATGGGTTATCTCCTTCCGATGGGGCTTACATGTTTCCACTGAATATCTTTGGCCGATTGGTTCAACTGCATTTCCCTCATCCATCACTTAAAAATAATAGTTTGAGTCAAACCCCAAGGCTAAAGGAAGCCTTTCCTAGTCTCAAAGCTATTCATTATGGAAACTGATGGTCTGGATCAAAGACTTCTGTGCATAGGTCCATAAGCTATGGTCTGGATCAAAGACTTCTGTGCATATACAAGGTCCATATCTAATCGCTTGGTTGACCCAAGCTTATCAGGAAGGTGTAATTAGAAGCCTATATATAAAATGTAACTGATGGTGATTGTCTTTGCCATTTGAAAATGGTCTCCATTCCTATTTGGTCGGTGATTCACAAGTCACAATTCATACAGATCAATGCATCTTGAAGTTTTTGCTCAAACAACAGTATGAATGCAAGTTCCCCAAGAGGGTGGGGAAGCCCACTTGTTAGGTAAAAGAATGAGCTGAGAATTGAGACACACGGCAAGGATTGGTAGATTGATCTCGGAAAGGGAGATTGAGGAATGTAGACAGTTTTTCTACCAGCAGAATTCCACTTGGAGGGAGTATCGGTAGCATCCGGAACGGCTGGCCACTTTGTAATTTTGCCTTATAGTCTTTCAGAAATGATAAAATCTCTTACTGGGGTATTCATTTCATTAGATCTTTTTCAGATGGATGTGGATGAATGGTTAGTGATGAAGAAAAAGGACGGAACTTAGTTCCAAGTAGGCAGCCTGATAGCAGATGGTCTACTGGAGGAGTTGAGCATCTTTTTTGTTAATCCACATGCTGTTTCTGAACAGCATGTCAGATTCATAGCCAGCAGGATGTGTCTTTTAAGGTTTTGAAATGAAATTTAGAATTCTCAAATTCTTGAGATTTTTCTTCTGGCATCTTGATTTTGGGAAGGTTAATTCTTTTTATCTTATACAGAAACTCAAGGTTATAGCTCTGCATCCTCATTGGTGCTGTTTATGTAACAATACCGATTGCTGACAATGTAAAGAACTCCAATTAA

mRNA sequence

ATGATGGTTGGTTACTTTGAGTTGAATGATACTTCTGTGTCTAATGACTTCACAAAGGAGAAGTTGGAACTTGGAAGGGGAAGAGTTGTGTGTGGAAGATATTGCTGCACAACAGTCTTGGTTCAGGGTGTGAGCCAATGCATGGTGGTAGTCTTTGCTCTACAAGATATTATAGATGTGGTGATTTCCTTTCGTTACCCTTGGATAACTCCTAGGTCCTTATCTACATTTCCAACTTCAAAAGAACTAAATCAAGAAGTTAGGGCCGGAGAAGCTTCTGCTAGGCATACTACAATCCAATACAAGTCGACTTCTTACTGTTCAAAAGGAAGAACAGTAGATAGTGATTTTATATTGGCTCCATTGAGCCTTAACACACTCTGCATCCTCATTGGTGCTGTTTATGTAACAATACCGATTGCTGACAATGTAAAGAACTCCAATTAA

Coding sequence (CDS)

ATGATGGTTGGTTACTTTGAGTTGAATGATACTTCTGTGTCTAATGACTTCACAAAGGAGAAGTTGGAACTTGGAAGGGGAAGAGTTGTGTGTGGAAGATATTGCTGCACAACAGTCTTGGTTCAGGGTGTGAGCCAATGCATGGTGGTAGTCTTTGCTCTACAAGATATTATAGATGTGGTGATTTCCTTTCGTTACCCTTGGATAACTCCTAGGTCCTTATCTACATTTCCAACTTCAAAAGAACTAAATCAAGAAGTTAGGGCCGGAGAAGCTTCTGCTAGGCATACTACAATCCAATACAAGTCGACTTCTTACTGTTCAAAAGGAAGAACAGTAGATAGTGATTTTATATTGGCTCCATTGAGCCTTAACACACTCTGCATCCTCATTGGTGCTGTTTATGTAACAATACCGATTGCTGACAATGTAAAGAACTCCAATTAA

Protein sequence

MMVGYFELNDTSVSNDFTKEKLELGRGRVVCGRYCCTTVLVQGVSQCMVVVFALQDIIDVVISFRYPWITPRSLSTFPTSKELNQEVRAGEASARHTTIQYKSTSYCSKGRTVDSDFILAPLSLNTLCILIGAVYVTIPIADNVKNSN

Homology

The following BLAST results are available for this feature:

BLAST of HG10006645.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006645.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006645.1 vs.


Match Name	E-value	Identity	Description

BLAST of HG10006645.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10006645	HG10006645	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10006645.1-cds	HG10006645.1-cds-Chr07:20656901..20656969	CDS
HG10006645.1-cds	HG10006645.1-cds-Chr07:20659347..20659626	CDS
HG10006645.1-cds	HG10006645.1-cds-Chr07:20659782..20659879	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10006645.1	HG10006645.1-protein	polypeptide