HG10006268.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006268.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	sequence-specific DNA binding transcription factors;transcription regulators
Location	Chr07: 16667120 .. 16667452 (-)
Sequence length	333
RNA-Seq Expression	HG10006268.1
Synteny	HG10006268.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTATTCACTCATTTCGATCGAGAAGACAAGCCACCACCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGCTAAAGCTTCTTCACCTCCCAAGAAACACCTCCTCCTCCACCGCTGTCTCCACCACCGCTGCCGCTGCCACCGCCTCCCGAACAACCCCCTCCGCCGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

mRNA sequence

ATGAGGTCTATTCACTCATTTCGATCGAGAAGACAAGCCACCACCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGCTAAAGCTTCTTCACCTCCCAAGAAACACCTCCTCCTCCACCGCTGTCTCCACCACCGCTGCCGCTGCCACCGCCTCCCGAACAACCCCCTCCGCCGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Coding sequence (CDS)

ATGAGGTCTATTCACTCATTTCGATCGAGAAGACAAGCCACCACCATTTCCAATCTCAAACCAACAAGGAGAAGAAGGCTAAAGCTTCTTCACCTCCCAAGAAACACCTCCTCCTCCACCGCTGTCTCCACCACCGCTGCCGCTGCCACCGCCTCCCGAACAACCCCCTCCGCCGCCATGCACAAAAGGCTGAGAAATCTTCAGAGGCTGGTCCCTGGCCACACCCATGAAACCAACCTCAACCACTTGTTTCAAAGAACTGCAGATTACATCTTTGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACTTCTTTCTATGGCCTTTGA

Protein sequence

MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL

Homology

[Close]

BLAST of HG10006268.1 vs. NCBI nr
Match: KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAM 60
           MRSIHSFRSRRQATTIS LKP+RRRR+KLLHLP++TSSST       +AT +RTTPSAAM
Sbjct: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSST------VSATTNRTTPSAAM 118

Query: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL 111
           HKRLRNLQRLVPGHTHETNLNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 119 HKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162

[Close]

BLAST of HG10006268.1 vs. NCBI nr
Match: KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 88/110 (80.00%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAM 60
           MRSIHSFR RRQAT+ +NLKPTRRRRLKL+HLP+NT+SS+A+S     A A+ TTPS AM
Sbjct: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAIS-----AAATGTTPSPAM 60

Query: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL 111
           HKRLRNLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  HKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105

[Close]

BLAST of HG10006268.1 vs. NCBI nr
Match: OMP08066.1 (hypothetical protein COLO4_06805 [Corchorus olitorius])

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 39/110 (35.45%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAM 60
           MRS  S R RR+   ++  +  R R++ L +LP N +S          + + RT    ++
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNS---------VSESLRT----SV 60

Query: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL 111
            ++L  LQR++P   +E N++ LFQ TADYIF L+ K+++L++L++FYG+
Sbjct: 61  ERKLEELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of HG10006268.1 vs. ExPASy TrEMBL
Match: A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.5e-40
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAM 60
           MRSIHSFRSRRQATTIS LKP+RRRR+KLLHLP++TSSST       +AT +RTTPSAAM
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSST------VSATTNRTTPSAAM 60

Query: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL 111
           HKRLRNLQRLVPGHTHETNLNHLFQRTADYI ALQLKLNILKDLTSFYGL
Sbjct: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

[Close]

BLAST of HG10006268.1 vs. ExPASy TrEMBL
Match: A0A1R3KLV4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 39/110 (35.45%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MRSIHSFRSRRQATTISNLKPTRRRRLKLLHLPRNTSSSTAVSTTAAAATASRTTPSAAM 60
           MRS  S R RR+   ++  +  R R++ L +LP N +S          + + RT    ++
Sbjct: 1   MRSKRSPRGRRK-VLLTRGRKLRIRQINLSNLPNNNNS---------VSESLRT----SV 60

Query: 61  HKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDLTSFYGL 111
            ++L  LQR++P   +E N++ LFQ TADYIF L+ K+++L++L++FYG+
Sbjct: 61  ERKLEELQRILPDACNEINMDTLFQMTADYIFLLEAKVSLLQNLSTFYGV 96

[Close]

BLAST of HG10006268.1 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 43.9 bits (102), Expect = 9.7e-05
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 56  PSAAMHKRLRNLQRLVPGHTHETNLNHLFQRTADYIFALQLKLNILKDL 105
           P  A+H+R++ L+ LVP       L+ LF++TADYI AL++K+ +++ +
Sbjct: 44  PCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTM 92

The following BLAST results are available for this feature:

BLAST of HG10006268.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651649.1	1.1e-39	85.45	hypothetical protein Csa_021260, partial [Cucumis sativus]	[more]
KAG6598843.1	1.2e-36	80.00	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
OMP08066.1	3.5e-04	35.45	hypothetical protein COLO4_06805 [Corchorus olitorius]	[more]

BLAST of HG10006268.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006268.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ57	5.5e-40	85.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1	[more]
A0A1R3KLV4	1.7e-04	35.45	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06805 PE=4 SV=1	[more]

BLAST of HG10006268.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	9.7e-05	38.78	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..56
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 12..108
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..108
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 59..105 e-value: 1.98129E-13 score: 58.0176
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 60..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10006268	HG10006268	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10006268.1-cds	HG10006268.1-cds-Chr07:16667120..16667452	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10006268.1	HG10006268.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity