HG10005853.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005853.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ESCRT-related protein CHMP1B-like
Location	Chr07: 7053023 .. 7053401 (-)
Sequence length	222
RNA-Seq Expression	HG10005853.1
Synteny	HG10005853.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTCGTGCAGTCTTCAAATACGTGCAGATCCATCGGTCGTGAGTCAGATTCGCTCGTCGGCGTCGTGCAGATCCGTTTATTAGCGTCAGATTCGTGCTGACTTCAGATCTGTGTCGATCCATTACTCGCGTAGTCATATCCGCTCGTCGGCGTTGTGACTTAGCTTTATTTGTTAGGTTCGTGTTCGTTCATTAGATCCGCTGTTCTTCAAGCCCGATCTTAGCTCAGATCTGTTCAAGATCAAGAAAGTGCGAGGAGGAAAATCTGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACAAATTTATACTAAGAATGCAATTCAGAAGCATACGGAGCATATGAACTACCTCTGA

mRNA sequence

ATGAGCGTCGTGCAGTCTTCAAATACGTGCAGATCCATCGGTCATCCGCTGTTCTTCAAGCCCGATCTTAGCTCAGATCTGTTCAAGATCAAGAAAGTGCGAGGAGGAAAATCTGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACAAATTTATACTAAGAATGCAATTCAGAAGCATACGGAGCATATGAACTACCTCTGA

Coding sequence (CDS)

ATGAGCGTCGTGCAGTCTTCAAATACGTGCAGATCCATCGGTCATCCGCTGTTCTTCAAGCCCGATCTTAGCTCAGATCTGTTCAAGATCAAGAAAGTGCGAGGAGGAAAATCTGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACAAATTTATACTAAGAATGCAATTCAGAAGCATACGGAGCATATGAACTACCTCTGA

Protein sequence

MSVVQSSNTCRSIGHPLFFKPDLSSDLFKIKKVRGGKSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL

Homology

[Close]

BLAST of HG10005853.1 vs. NCBI nr
Match: XP_009396527.1 (PREDICTED: ESCRT-related protein CHMP1-like [Musa acuminata subsp. malaccensis] >CAG1858154.1 unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLK+KKA+EKGNMDGA+IY +NAI+K TEHMNYL
Sbjct: 33 KSEKLKVKKAIEKGNMDGARIYAQNAIRKRTEHMNYL 69

[Close]

BLAST of HG10005853.1 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. NCBI nr
Match: XP_020103063.1 (ESCRT-related protein CHMP1-like [Ananas comosus] >XP_020103064.1 ESCRT-related protein CHMP1-like [Ananas comosus] >XP_020103065.1 ESCRT-related protein CHMP1-like [Ananas comosus] >XP_020103066.1 ESCRT-related protein CHMP1-like [Ananas comosus] >CAD1840131.1 unnamed protein product [Ananas comosus var. bracteatus] >OAY78559.1 ESCRT-related protein CHMP1A [Ananas comosus])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K+EKLK+KKAMEKGN+DGA+IY +NAI+K TEHMNYL
Sbjct: 33 KAEKLKVKKAMEKGNVDGARIYAENAIRKRTEHMNYL 69

[Close]

BLAST of HG10005853.1 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-09
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K +KLK+KKA+EKGNMDGA+IY +NAI+K TEHMNYL
Sbjct: 33 KEQKLKVKKAIEKGNMDGARIYAENAIRKRTEHMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-08
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          +SEKLK+KKA+EKGNMDGA+IY +NAI+K +E MNYL
Sbjct: 33 RSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-08
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K+EKLK+KKA+EKGNMDGA+IY +NAI+K +E MNYL
Sbjct: 33 KAEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 31 KKVRGGKSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K  +  K++K+K+KKA+E+GNMDGA+IY +NAI++  + +NYL
Sbjct: 21 KSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYL 63

[Close]

BLAST of HG10005853.1 vs. ExPASy TrEMBL
Match: M0RYJ5 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103981501 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLK+KKA+EKGNMDGA+IY +NAI+K TEHMNYL
Sbjct: 33 KSEKLKVKKAIEKGNMDGARIYAQNAIRKRTEHMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy TrEMBL
Match: A0A199VNC4 (ESCRT-related protein CHMP1-like OS=Ananas comosus OX=4615 GN=LOC109720397 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K+EKLK+KKAMEKGN+DGA+IY +NAI+K TEHMNYL
Sbjct: 33 KAEKLKVKKAMEKGNVDGARIYAENAIRKRTEHMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          KSEKLKIKKAMEKGNMDGA+IY +NAI+K TE MNYL
Sbjct: 33 KSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-09
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          K+EKLK+KKA+EKGNMDGA+IY +NAI+K +E MNYL
Sbjct: 33 KAEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYL 69

[Close]

BLAST of HG10005853.1 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-09
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 37 KSEKLKIKKAMEKGNMDGAQIYTKNAIQKHTEHMNYL 74
          +SEKLK+KKA+EKGNMDGA+IY +NAI+K +E MNYL
Sbjct: 33 RSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYL 69

The following BLAST results are available for this feature:

BLAST of HG10005853.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009396527.1	4.9e-07	81.08	PREDICTED: ESCRT-related protein CHMP1-like [Musa acuminata subsp. malaccensis] ...	[more]
XP_022949550.1	1.1e-06	83.78	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_022148096.1	1.1e-06	83.78	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]
XP_020103063.1	1.1e-06	78.38	ESCRT-related protein CHMP1-like [Ananas comosus] >XP_020103064.1 ESCRT-related ...	[more]
XP_004146833.1	1.1e-06	83.78	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]

BLAST of HG10005853.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VG1	4.2e-09	75.68	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
Q8LE58	3.6e-08	72.97	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q9SSM4	3.6e-08	72.97	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
O96552	1.7e-05	51.16	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]

BLAST of HG10005853.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M0RYJ5	2.4e-07	81.08	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103981...	[more]
A0A199VNC4	5.3e-07	78.38	ESCRT-related protein CHMP1-like OS=Ananas comosus OX=4615 GN=LOC109720397 PE=4 ...	[more]
A0A6J1KC50	5.3e-07	83.78	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]
A0A5A7V1A1	5.3e-07	83.78	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	5.3e-07	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]

BLAST of HG10005853.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	2.5e-09	72.97	SNF7 family protein	[more]
AT1G17730.1	2.5e-09	72.97	vacuolar protein sorting 46.1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 34..73
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 34..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10005853	HG10005853	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10005853.1-cds	HG10005853.1-cds-Chr07:7053023..7053201	CDS
HG10005853.1-cds	HG10005853.1-cds-Chr07:7053359..7053401	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10005853.1	HG10005853.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body