HG10003110.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003110.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	GUB_WAK_bind domain-containing protein
Location	Chr11: 17485279 .. 17487659 (+)
Sequence length	762
RNA-Seq Expression	HG10003110.1
Synteny	HG10003110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTCAGTCCTTTCCTTCTTCTTCTTCTTCCTCTTCTTCATCTCTCCCATTTCCATTAAATCCCAAATTCCTTCTTCAACAACTCATTGCAACCATGGTTGTCCCAAAATCCAATTCCCTTTTGATTTCAACTTTTCTTGTTCATCAAACACTACAAGAATCCACTTCAAAACCTATGATTCTCTTTCAATCAAATCCATTTCCTATGATCAAAAAAGAGTTGATCTTGTTGACCTAAACCGCTGCGTCCACGCCGCCTTTCTCAACCTAAACCTCTCCCTCACCCCGTTTCGATACTTCTACGTCGTTAAAGATTACTGGTACCTTAACTGCACGACGAGATTGGTATCAACATCATCGACGCCAGTACCGTGCCTGAGTCGAGACGAGGAGTACTATGTCTATGTTGTGAGGACACCATTAATGGGAAGTACACCAAGATTTTGCAAGGAAATCAAGAGAGTGAAGATCCCATTTGAGTATAGTCCTTATCTTGATGATGGTTCTTTTGGACTTGCCTTAACTTGGGGTTTTGATGATCACACTAAAACAAAGTCTCAAATAGGATGGTTCTTTAAAGCAACAAATTTTCAAGGTAACATTACATTCTTTCCTTCTTTTGGTCACTAAGGAAAAAGAAAAAGTTAAAAAAGAATCTTTTTTTCTTTTCTTTTGTGTTCATTATTGAGTAGTTATGACCATTCATTCAATCATCTTTTGATCATCTCATGAGCTTTCATTTTGTTATAGTCCTTTTAAAAAAAATAAGACTTAGTTTTATATATATATATATATATATATATATATATATTATATATATATTTTTTTTTTTTTTATATTCGTGAGTGTCCAAGTCAGTTTACGCACACCTCGACTAATCTCATGGGACAACCCACCCGACCCTACAACATTTGGGTGTTAAGGAAACCCATAGGATTAAATCCTAGGTAGGTGGCCACATAGATTGAACCCTCGATTAGTTTTATATTATTTTTTAGTCCCTAAGATTTACTTTTAGGGTTGTTTTCAAATCTAGAAAAACGAGTCAAACTATTTACAAATATAGAAAAATTTTATTGTCTATCCGCGATAGAATTCTATCGTTTGAGCGATAGATAGTGATAGAATTCTATCGTTATCGACACTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTATTTATAATAATTTCTCTTACATTTGTTAACTATGGGTATCACATTTGTTAAAGCATATATATGTGTGTATAAATATACTAAAATGAGGGTGAATGAAAGTTACATTGAATTAATATTAAGTAATTAGCAAACATAATTAAACAAAAACTTTTTAGATTATCTTTTAAAAAAGATTGTTTTTTTTTTAATTTACCATGTACTTTTTCTTTCTTTTAAGGAATGAAAATATTCCATCTAGAAAACCCACCTAAGAATGATTTCTAAATTATTTAATAAATAACTCCAACTCCACAGATCCTATATAAACTATTTCTTAAAAAACCCCTTTAGTAATATAAAATTGCCAAATAGTACCGAGAATAATTTAATTTAAGTATACTTAAAGGACCACTCTATAATTTTTTTTTTTTTAAAGAAAAAAAGCCTTTTTGTAAAGTAATTGTTAAATAGTCCCTTAATGTCACTTGCAATCATACATTGTATTAATTGCTTTGCAAATTGCTATAGTTTTTTTTTTAAACATAATTATGTCATAGATAAGAATTGACTTTGAATATTCAAAGTCCTCTGTTTGGAAAATTATAAAAGCAAGACTGAATTATGTAAAGTCTTTTTTTTTTAATATAAACTTCAATAATTATGAAAGACATGATAATCGAACCATCAACTTTTGACATGGTAATTAATGTCTTATTTATTATTGATCTAAAAGAAATTTCTTTTAGATCAATAATTTGGATCCCAATAAATATTTGGCTTGGCTTGAATTCTTAAATAAACTCAGAATTGTTGTCCTAAGTTTATATAACCTATGTTTGAATTTATATAGAAATAAAAAAATGAAAACTAAATTTATGATTTTTAAAGATTGTATTATAAAACTATTTTCAAGAGTCATTAAAACAAATATAATACTTTGTATTGACCATGACTTTGATACATAGAATAATGATGACACTAATGAAAAATAAAAATCAATAATTTTTCTTTTTATTTTGTGAATAAATTTTTTTTTTCTTATATGCAGTTCTTGGAATTAGCGTGCTTGTGGCTATGATGGCAATATTATCAATGGTGATAATGAAGATATATCACTCGAAAAATAAAAAATATTCAAAGGAAGAAGCTGAGAAAAAGATGTTTGAACATTCATATGAAGCACTAAAAACTGGTTCAGATGAGCCCTGA

mRNA sequence

ATGGAAATTTCAGTCCTTTCCTTCTTCTTCTTCTTCCTCTTCTTCATCTCTCCCATTTCCATTAAATCCCAAATTCCTTCTTCAACAACTCATTGCAACCATGGTTGTCCCAAAATCCAATTCCCTTTTGATTTCAACTTTTCTTGTTCATCAAACACTACAAGAATCCACTTCAAAACCTATGATTCTCTTTCAATCAAATCCATTTCCTATGATCAAAAAAGAGTTGATCTTGTTGACCTAAACCGCTGCGTCCACGCCGCCTTTCTCAACCTAAACCTCTCCCTCACCCCGTTTCGATACTTCTACGTCGTTAAAGATTACTGGTACCTTAACTGCACGACGAGATTGGTATCAACATCATCGACGCCAGTACCGTGCCTGAGTCGAGACGAGGAGTACTATGTCTATGTTGTGAGGACACCATTAATGGGAAGTACACCAAGATTTTGCAAGGAAATCAAGAGAGTGAAGATCCCATTTGAGTATAGTCCTTATCTTGATGATGGTTCTTTTGGACTTGCCTTAACTTGGGGTTTTGATGATCACACTAAAACAAAGTCTCAAATAGGATGGTTCTTTAAAGCAACAAATTTTCAAGTTCTTGGAATTAGCGTGCTTGTGGCTATGATGGCAATATTATCAATGGTGATAATGAAGATATATCACTCGAAAAATAAAAAATATTCAAAGGAAGAAGCTGAGAAAAAGATGTTTGAACATTCATATGAAGCACTAAAAACTGGTTCAGATGAGCCCTGA

Coding sequence (CDS)

ATGGAAATTTCAGTCCTTTCCTTCTTCTTCTTCTTCCTCTTCTTCATCTCTCCCATTTCCATTAAATCCCAAATTCCTTCTTCAACAACTCATTGCAACCATGGTTGTCCCAAAATCCAATTCCCTTTTGATTTCAACTTTTCTTGTTCATCAAACACTACAAGAATCCACTTCAAAACCTATGATTCTCTTTCAATCAAATCCATTTCCTATGATCAAAAAAGAGTTGATCTTGTTGACCTAAACCGCTGCGTCCACGCCGCCTTTCTCAACCTAAACCTCTCCCTCACCCCGTTTCGATACTTCTACGTCGTTAAAGATTACTGGTACCTTAACTGCACGACGAGATTGGTATCAACATCATCGACGCCAGTACCGTGCCTGAGTCGAGACGAGGAGTACTATGTCTATGTTGTGAGGACACCATTAATGGGAAGTACACCAAGATTTTGCAAGGAAATCAAGAGAGTGAAGATCCCATTTGAGTATAGTCCTTATCTTGATGATGGTTCTTTTGGACTTGCCTTAACTTGGGGTTTTGATGATCACACTAAAACAAAGTCTCAAATAGGATGGTTCTTTAAAGCAACAAATTTTCAAGTTCTTGGAATTAGCGTGCTTGTGGCTATGATGGCAATATTATCAATGGTGATAATGAAGATATATCACTCGAAAAATAAAAAATATTCAAAGGAAGAAGCTGAGAAAAAGATGTTTGAACATTCATATGAAGCACTAAAAACTGGTTCAGATGAGCCCTGA

Protein sequence

MEISVLSFFFFFLFFISPISIKSQIPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFKTYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVSTSSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWGFDDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKMFEHSYEALKTGSDEP

Homology

[Close]

BLAST of HG10003110.1 vs. NCBI nr
Match: XP_038905185.1 (putative RING-H2 finger protein ATL21A [Benincasa hispida])

HSP 1 Score: 466.5 bits (1199), Expect = 1.5e-127
Identity = 228/253 (90.12%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQIPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFKT 60
           MEIS+ S FFFF F ISPISIK+Q PSS THCNHGCPKIQFPFDFN SCSSNTTRIHFKT
Sbjct: 1   MEISIFSIFFFFFFLISPISIKAQFPSSKTHCNHGCPKIQFPFDFNISCSSNTTRIHFKT 60

Query: 61  YDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVST 120
           YDSLSIKSISYDQKR+DLVDLNRCVHAAFL LNL LTPFRYFYVVKDYWYLNCTTRLVST
Sbjct: 61  YDSLSIKSISYDQKRLDLVDLNRCVHAAFLKLNLDLTPFRYFYVVKDYWYLNCTTRLVST 120

Query: 121 SSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWGF 180
           SSTP+PCLSRD EYYVY VR PLMGSTPR CKEIKRVKIPFEYSPYLDDGSFGL+LTWGF
Sbjct: 121 SSTPIPCLSRDGEYYVYAVRPPLMGSTPRSCKEIKRVKIPFEYSPYLDDGSFGLSLTWGF 180

Query: 181 DDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKMFE 240
           DDHTKTKSQI  FFKATNFQV+GIS+LVAM+AILSMV+MKIYHSKNKKYSKEEAEKKMFE
Sbjct: 181 DDHTKTKSQIRCFFKATNFQVVGISLLVAMVAILSMVMMKIYHSKNKKYSKEEAEKKMFE 240

Query: 241 HSYEALKTGSDEP 254
           HSYE LKTGSDEP
Sbjct: 241 HSYEPLKTGSDEP 253

[Close]

BLAST of HG10003110.1 vs. NCBI nr
Match: XP_004147259.2 (uncharacterized protein LOC101212248 [Cucumis sativus] >KGN55857.2 hypothetical protein Csa_010719 [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 3.7e-110
Identity = 215/262 (82.06%), Postives = 231/262 (88.17%), Query Frame = 0


Query: 3   ISVLSFFFFFLFFISPISIKSQIP-SSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFKTY 62
           IS+LSFFFFFL  ISPIS  SQ P SSTTHCNHGCPKIQFPFDFN SCSSNTTRIHFKTY
Sbjct: 4   ISILSFFFFFL--ISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFKTY 63

Query: 63  DSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVSTS 122
           DSLSIKSISYDQKR+DL+DLNRCVHAAFLNL+LSLTPFRYFYVVKDY YLNCTTRLVS+S
Sbjct: 64  DSLSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYFYVVKDYLYLNCTTRLVSSS 123

Query: 123 STPVPCLSRDEEYYVYVVRTPLMGS-TPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWGF 182
           ST +PCLSRD EYYVYVV+ PLMGS  PRFCKE+KRVKIPFEYSPYLDDGSFGLALTWGF
Sbjct: 124 STSIPCLSRDGEYYVYVVKPPLMGSGIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTWGF 183

Query: 183 DDHTKTKSQIGWFFKATNFQVLGISVL------VAMMAILSMVIM--KIYHSKNKKYSKE 242
           DD TKTKSQI  FFKAT+FQV+GIS+L      VAM+AIL+MV+M  K Y SKNK YSKE
Sbjct: 184 DDQTKTKSQIECFFKATSFQVVGISLLVAMVAMVAMVAILTMVMMKKKYYESKNKNYSKE 243

Query: 243 EAEKKMFEH-SYEALKTGSDEP 254
           E EKKMFEH SYE LKT S++P
Sbjct: 244 EGEKKMFEHYSYEPLKTASNDP 263

[Close]

BLAST of HG10003110.1 vs. NCBI nr
Match: KAA0041066.1 (RING-H2 finger protein ATL22-like [Cucumis melo var. makuwa] >TYK12042.1 RING-H2 finger protein ATL22-like [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 2.3e-96
Identity = 175/202 (86.63%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQIP-SSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           M+IS++SF FFF F ISPIS  SQ P SSTTHCNHGCPKIQFPFDFN SCSSNTTRIHFK
Sbjct: 1   MKISIISFSFFFFFLISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
            YDSLSIKSISYDQKR+DL+DLNRCVHAAFLNL+LSLTPFRY+YVVKDYWYLNCTTRLVS
Sbjct: 61  AYDSLSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYYYVVKDYWYLNCTTRLVS 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGST-PRFCKEIKRVKIPFEYSPYLDDGSFGLALTW 180
           +SST +PCLSRD EYYVYVVR PLMGS+ PRFCKE+KRVKIPFEYSPYLDDGSFGLALTW
Sbjct: 121 SSSTSIPCLSRDGEYYVYVVRPPLMGSSIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTW 180

Query: 181 GFDDHTKTKSQIGWFFKATNFQ 201
           GFDD TKTKSQI  FFKATNFQ
Sbjct: 181 GFDDQTKTKSQIECFFKATNFQ 202

[Close]

BLAST of HG10003110.1 vs. NCBI nr
Match: XP_023005514.1 (uncharacterized protein LOC111498479 isoform X1 [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 1.3e-91
Identity = 179/254 (70.47%), Postives = 211/254 (83.07%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQ-IPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           MEIS L FF FFL  +SPISIK+Q  P++TTHC+HG P I  PF FN SCSSNTTRIHFK
Sbjct: 1   MEISALFFFIFFL--LSPISIKAQTTPTTTTHCSHGSPPIHLPFTFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
           +YDSLSIKSISYD+KR+DL+DLN CVH AFL LNLSLTPFRYFYVV+DY YLNCT++L+ 
Sbjct: 61  SYDSLSIKSISYDKKRLDLIDLNGCVHGAFLKLNLSLTPFRYFYVVRDYKYLNCTSKLL- 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWG 180
           T S P+PCLSR  +YYVYVVR   M  TPRFCKE+K+VKIPFEYSPYLDDGSFGL+LTWG
Sbjct: 121 TPSPPIPCLSRPRDYYVYVVRE--MEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLTWG 180

Query: 181 -FDDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKM 240
             DD  +T+SQ G  +KA N++VLG+S+LVAM+ I  MVI+KI HSK +K+ KEEA+KK+
Sbjct: 181 PNDDEGRTESQRGCLYKAPNYEVLGVSLLVAMVVISLMVIIKICHSKKQKFLKEEAQKKV 240

Query: 241 FEHSYEALKTGSDE 253
           FEHSYEA+K  SDE
Sbjct: 241 FEHSYEAIKPRSDE 249

[Close]

BLAST of HG10003110.1 vs. NCBI nr
Match: XP_023005515.1 (uncharacterized protein LOC111498479 isoform X2 [Cucurbita maxima])

HSP 1 Score: 339.7 bits (870), Expect = 2.1e-89
Identity = 177/254 (69.69%), Postives = 209/254 (82.28%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQ-IPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           MEIS L FF FFL  +SPISIK+Q  P++TTHC+HG P I  PF FN SCSSNTTRIHFK
Sbjct: 1   MEISALFFFIFFL--LSPISIKAQTTPTTTTHCSHGSPPIHLPFTFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
           +YDSLSIKSISYD+KR+DL+DLN CVH AFL LNLSLTPFRYFYVV+DY YLNCT++L+ 
Sbjct: 61  SYDSLSIKSISYDKKRLDLIDLNGCVHGAFLKLNLSLTPFRYFYVVRDYKYLNCTSKLL- 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWG 180
           T S P+PCLSR  +YYVYVVR   M  TPRFCKE+K+VKIPFEYSPYLDDGSFGL+LTWG
Sbjct: 121 TPSPPIPCLSRPRDYYVYVVRE--MEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLTWG 180

Query: 181 -FDDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKM 240
             DD  +T+SQ G  +KA N++  G+S+LVAM+ I  MVI+KI HSK +K+ KEEA+KK+
Sbjct: 181 PNDDEGRTESQRGCLYKAPNYE--GVSLLVAMVVISLMVIIKICHSKKQKFLKEEAQKKV 240

Query: 241 FEHSYEALKTGSDE 253
           FEHSYEA+K  SDE
Sbjct: 241 FEHSYEAIKPRSDE 247

[Close]

BLAST of HG10003110.1 vs. ExPASy TrEMBL
Match: A0A0A0L6T1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019320 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.1e-111
Identity = 215/259 (83.01%), Postives = 231/259 (89.19%), Query Frame = 0


Query: 3   ISVLSFFFFFLFFISPISIKSQIP-SSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFKTY 62
           IS+LSFFFFFL  ISPIS  SQ P SSTTHCNHGCPKIQFPFDFN SCSSNTTRIHFKTY
Sbjct: 4   ISILSFFFFFL--ISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFKTY 63

Query: 63  DSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVSTS 122
           DSLSIKSISYDQKR+DL+DLNRCVHAAFLNL+LSLTPFRYFYVVKDY YLNCTTRLVS+S
Sbjct: 64  DSLSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYFYVVKDYLYLNCTTRLVSSS 123

Query: 123 STPVPCLSRDEEYYVYVVRTPLMGS-TPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWGF 182
           ST +PCLSRD EYYVYVV+ PLMGS  PRFCKE+KRVKIPFEYSPYLDDGSFGLALTWGF
Sbjct: 124 STSIPCLSRDGEYYVYVVKPPLMGSGIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTWGF 183

Query: 183 DDHTKTKSQIGWFFKATNFQVLGISVL---VAMMAILSMVIM--KIYHSKNKKYSKEEAE 242
           DD TKTKSQI  FFKAT+FQV+GIS+L   VAM+AIL+MV+M  K Y SKNK YSKEE E
Sbjct: 184 DDQTKTKSQIECFFKATSFQVVGISLLVAMVAMVAILTMVMMKKKYYESKNKNYSKEEGE 243

Query: 243 KKMFEH-SYEALKTGSDEP 254
           KKMFEH SYE LKT S++P
Sbjct: 244 KKMFEHYSYEPLKTASNDP 260

[Close]

BLAST of HG10003110.1 vs. ExPASy TrEMBL
Match: A0A5A7TG97 (RING-H2 finger protein ATL22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00550 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.1e-96
Identity = 175/202 (86.63%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQIP-SSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           M+IS++SF FFF F ISPIS  SQ P SSTTHCNHGCPKIQFPFDFN SCSSNTTRIHFK
Sbjct: 1   MKISIISFSFFFFFLISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
            YDSLSIKSISYDQKR+DL+DLNRCVHAAFLNL+LSLTPFRY+YVVKDYWYLNCTTRLVS
Sbjct: 61  AYDSLSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYYYVVKDYWYLNCTTRLVS 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGST-PRFCKEIKRVKIPFEYSPYLDDGSFGLALTW 180
           +SST +PCLSRD EYYVYVVR PLMGS+ PRFCKE+KRVKIPFEYSPYLDDGSFGLALTW
Sbjct: 121 SSSTSIPCLSRDGEYYVYVVRPPLMGSSIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTW 180

Query: 181 GFDDHTKTKSQIGWFFKATNFQ 201
           GFDD TKTKSQI  FFKATNFQ
Sbjct: 181 GFDDQTKTKSQIECFFKATNFQ 202

[Close]

BLAST of HG10003110.1 vs. ExPASy TrEMBL
Match: A0A6J1KZE3 (uncharacterized protein LOC111498479 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498479 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 6.4e-92
Identity = 179/254 (70.47%), Postives = 211/254 (83.07%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQ-IPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           MEIS L FF FFL  +SPISIK+Q  P++TTHC+HG P I  PF FN SCSSNTTRIHFK
Sbjct: 1   MEISALFFFIFFL--LSPISIKAQTTPTTTTHCSHGSPPIHLPFTFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
           +YDSLSIKSISYD+KR+DL+DLN CVH AFL LNLSLTPFRYFYVV+DY YLNCT++L+ 
Sbjct: 61  SYDSLSIKSISYDKKRLDLIDLNGCVHGAFLKLNLSLTPFRYFYVVRDYKYLNCTSKLL- 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWG 180
           T S P+PCLSR  +YYVYVVR   M  TPRFCKE+K+VKIPFEYSPYLDDGSFGL+LTWG
Sbjct: 121 TPSPPIPCLSRPRDYYVYVVRE--MEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLTWG 180

Query: 181 -FDDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKM 240
             DD  +T+SQ G  +KA N++VLG+S+LVAM+ I  MVI+KI HSK +K+ KEEA+KK+
Sbjct: 181 PNDDEGRTESQRGCLYKAPNYEVLGVSLLVAMVVISLMVIIKICHSKKQKFLKEEAQKKV 240

Query: 241 FEHSYEALKTGSDE 253
           FEHSYEA+K  SDE
Sbjct: 241 FEHSYEAIKPRSDE 249

[Close]

BLAST of HG10003110.1 vs. ExPASy TrEMBL
Match: A0A6J1KXL9 (uncharacterized protein LOC111498479 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498479 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 1.0e-89
Identity = 177/254 (69.69%), Postives = 209/254 (82.28%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQ-IPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFK 60
           MEIS L FF FFL  +SPISIK+Q  P++TTHC+HG P I  PF FN SCSSNTTRIHFK
Sbjct: 1   MEISALFFFIFFL--LSPISIKAQTTPTTTTHCSHGSPPIHLPFTFNLSCSSNTTRIHFK 60

Query: 61  TYDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVS 120
           +YDSLSIKSISYD+KR+DL+DLN CVH AFL LNLSLTPFRYFYVV+DY YLNCT++L+ 
Sbjct: 61  SYDSLSIKSISYDKKRLDLIDLNGCVHGAFLKLNLSLTPFRYFYVVRDYKYLNCTSKLL- 120

Query: 121 TSSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWG 180
           T S P+PCLSR  +YYVYVVR   M  TPRFCKE+K+VKIPFEYSPYLDDGSFGL+LTWG
Sbjct: 121 TPSPPIPCLSRPRDYYVYVVRE--MEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLTWG 180

Query: 181 -FDDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKM 240
             DD  +T+SQ G  +KA N++  G+S+LVAM+ I  MVI+KI HSK +K+ KEEA+KK+
Sbjct: 181 PNDDEGRTESQRGCLYKAPNYE--GVSLLVAMVVISLMVIIKICHSKKQKFLKEEAQKKV 240

Query: 241 FEHSYEALKTGSDE 253
           FEHSYEA+K  SDE
Sbjct: 241 FEHSYEAIKPRSDE 247

[Close]

BLAST of HG10003110.1 vs. ExPASy TrEMBL
Match: A0A6J1FJ12 (uncharacterized protein LOC111444707 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444707 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.6e-89
Identity = 174/253 (68.77%), Postives = 205/253 (81.03%), Query Frame = 0


Query: 1   MEISVLSFFFFFLFFISPISIKSQIPSSTTHCNHGCPKIQFPFDFNFSCSSNTTRIHFKT 60
           MEIS L F  FFL  +SPISIK+Q  ++TTHC+HG P I  PF FN SCSSNTTRIHFK+
Sbjct: 1   MEISALFFIIFFL--LSPISIKAQ--TTTTHCSHGSPSIHLPFTFNLSCSSNTTRIHFKS 60

Query: 61  YDSLSIKSISYDQKRVDLVDLNRCVHAAFLNLNLSLTPFRYFYVVKDYWYLNCTTRLVST 120
           YDSLSIKSISYDQKR+DL+DLN CVH AFL LNL+LTPFRYFYVV+DY YLNCT++L S+
Sbjct: 61  YDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNCTSKL-SS 120

Query: 121 SSTPVPCLSRDEEYYVYVVRTPLMGSTPRFCKEIKRVKIPFEYSPYLDDGSFGLALTWGF 180
            S P+PCLSR  +YYVYVVR   M  TPRFCKE+K+VKIPFEYSPYLDDGSFGL+L+WG 
Sbjct: 121 PSPPIPCLSRPRDYYVYVVRE--MEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGA 180

Query: 181 -DDHTKTKSQIGWFFKATNFQVLGISVLVAMMAILSMVIMKIYHSKNKKYSKEEAEKKMF 240
            DD  +T+S+ G  +KA N++VLG+ +L AM+ I SMVI+KI HSK  K  KEE +KK+F
Sbjct: 181 NDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKHKILKEEVQKKVF 240

Query: 241 EHSYEALKTGSDE 253
           EH YEALK GSDE
Sbjct: 241 EHPYEALKPGSDE 246

The following BLAST results are available for this feature:

BLAST of HG10003110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905185.1	1.5e-127	90.12	putative RING-H2 finger protein ATL21A [Benincasa hispida]	[more]
XP_004147259.2	3.7e-110	82.06	uncharacterized protein LOC101212248 [Cucumis sativus] >KGN55857.2 hypothetical ...	[more]
KAA0041066.1	2.3e-96	86.63	RING-H2 finger protein ATL22-like [Cucumis melo var. makuwa] >TYK12042.1 RING-H2...	[more]
XP_023005514.1	1.3e-91	70.47	uncharacterized protein LOC111498479 isoform X1 [Cucurbita maxima]	[more]
XP_023005515.1	2.1e-89	69.69	uncharacterized protein LOC111498479 isoform X2 [Cucurbita maxima]	[more]

BLAST of HG10003110.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10003110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6T1	8.1e-111	83.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019320 PE=4 SV=1	[more]
A0A5A7TG97	1.1e-96	86.63	RING-H2 finger protein ATL22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1KZE3	6.4e-92	70.47	uncharacterized protein LOC111498479 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KXL9	1.0e-89	69.69	uncharacterized protein LOC111498479 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FJ12	6.6e-89	68.77	uncharacterized protein LOC111444707 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10003110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46279	RING/U-BOX SUPERFAMILY PROTEIN	coord: 7..237
None	No IPR available	PANTHER	PTHR46279:SF12	PROTEIN, PUTATIVE-RELATED	coord: 7..237

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10003110	HG10003110	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10003110.1-cds	HG10003110.1-cds-Chr11:17485279..17485879	CDS
HG10003110.1-cds	HG10003110.1-cds-Chr11:17487499..17487659	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10003110.1	HG10003110.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane