HG10002321.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002321.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Charged multivesicular body protein 1
Location	Chr11: 5540836 .. 5541447 (-)
Sequence length	612
RNA-Seq Expression	HG10002321.1
Synteny	HG10002321.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATACGGAGAAATTGTTGAACCAGATCATGGAATTGAAATTTACGGCAAAATCACTGCAACGCCAAGCGAGAAAGTGCGAGAAGGAGGAAAAATCCGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACGAATTTACGCTGAGAATGCAATCCGGAAGCGTACGGAGCAGATGAACTACCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGATACGCAGGCAAAGATGTCCACCATAAACAAGTCTATGGGTTCGATCGTCAAATCCTTGGAAAGTACTTTGGCCACTGGTAATTTACAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAATTTGTGAACATGGAAGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTTTCGACCCCAGAGGGAGAGGTAAACAGCTTGATGCAACAGGTGGCCGACGACTATGGATTGGAGGTTTCCGTGGGTCTTCCACAGCCGGCAGGTCACGCTGTTCCGGCCAGGGAGACCGAGAAAATCGACGAGGACGACTTGTCAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

mRNA sequence

ATGGGTAATACGGAGAAATTGTTGAACCAGATCATGGAATTGAAATTTACGGCAAAATCACTGCAACGCCAAGCGAGAAAGTGCGAGAAGGAGGAAAAATCCGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACGAATTTACGCTGAGAATGCAATCCGGAAGCGTACGGAGCAGATGAACTACCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGATACGCAGGCAAAGATGTCCACCATAAACAAGTCTATGGGTTCGATCGTCAAATCCTTGGAAAGTACTTTGGCCACTGGTAATTTACAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAATTTGTGAACATGGAAGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTTTCGACCCCAGAGGGAGAGGTAAACAGCTTGATGCAACAGGTGGCCGACGACTATGGATTGGAGGTTTCCGTGGGTCTTCCACAGCCGGCAGGTCACGCTGTTCCGGCCAGGGAGACCGAGAAAATCGACGAGGACGACTTGTCAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Coding sequence (CDS)

ATGGGTAATACGGAGAAATTGTTGAACCAGATCATGGAATTGAAATTTACGGCAAAATCACTGCAACGCCAAGCGAGAAAGTGCGAGAAGGAGGAAAAATCCGAGAAGCTCAAGATCAAGAAAGCCATGGAGAAGGGAAACATGGATGGAGCACGAATTTACGCTGAGAATGCAATCCGGAAGCGTACGGAGCAGATGAACTACCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGATACGCAGGCAAAGATGTCCACCATAAACAAGTCTATGGGTTCGATCGTCAAATCCTTGGAAAGTACTTTGGCCACTGGTAATTTACAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAATTTGTGAACATGGAAGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTTTCGACCCCAGAGGGAGAGGTAAACAGCTTGATGCAACAGGTGGCCGACGACTATGGATTGGAGGTTTCCGTGGGTCTTCCACAGCCGGCAGGTCACGCTGTTCCGGCCAGGGAGACCGAGAAAATCGACGAGGACGACTTGTCAAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Protein sequence

MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPARETEKIDEDDLSRRLAELKARG

Homology

[Close]

BLAST of HG10002321.1 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 370.5 bits (950), Expect = 9.0e-99
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. NCBI nr
Match: KAE8651298.1 (hypothetical protein Csa_002473 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 9.0e-99
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 200/203 (98.52%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 200/203 (98.52%), Postives = 201/203 (99.01%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            RETEKIDEDDLSRRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. NCBI nr
Match: XP_038878614.1 (ESCRT-related protein CHMP1B-like [Benincasa hispida])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 200/203 (98.52%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLE+TLATGNLQKMSETMD+
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLETTLATGNLQKMSETMDR 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.6e-93
Identity = 181/203 (89.16%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            +  EK+DEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.0e-92
Identity = 178/203 (87.68%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            +  EK++EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.9e-86
Identity = 175/205 (85.37%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+ QI +LKFT+KSLQRQARKCEKEEK +KLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTE MNYLRLASRLDAVVARLDTQAKM  I KSM +IVKSL+S LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -ARETEK-IDEDDLSRRLAELKARG 204
            A+E EK +DEDDLSRRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 96/200 (48.00%), Postives = 147/200 (73.50%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           M N EK    +  LKF AK L R A+KC+KEEK+EK KIKKA++KGNM+ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSM  +VKS+++TL T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSV- 180

Query: 181 ARETEKIDEDDLSRRLAELK 201
                  ++D+LS+RLA L+
Sbjct: 181 GTSVASAEQDELSQRLARLR 196

[Close]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 90/194 (46.39%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 9   NQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFT+K L++Q++K E+ EK++K+K+KKA+E+GNMDGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNM 128
           LRLASR+DAV +R++T  +M ++  SM +IVKS+E ++   +L+K+++ MDQFE+QF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPARETEKID 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+ + ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLSRRLAELKAR 203
            D+L+ RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]

BLAST of HG10002321.1 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.3e-99
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.3e-99
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy TrEMBL
Match: A0A1S3BIE8 (ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.3e-99
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
           ARETEKIDEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.7e-99
Identity = 200/203 (98.52%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. ExPASy TrEMBL
Match: A0A6J1GD16 (ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.7e-99
Identity = 200/203 (98.52%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            RETEKIDEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 342.8 bits (878), Expect = 1.9e-94
Identity = 181/203 (89.16%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            +  EK+DEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 338.6 bits (867), Expect = 3.5e-93
Identity = 178/203 (87.68%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKIDEDDLSRRLAELKARG 204
            +  EK++EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of HG10002321.1 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 45/174 (25.86%), Postives = 90/174 (51.72%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAV 78
           + ++R+ +  + +EK    +IKK  ++G M   ++ A++ IR R +   + +L S+L  V
Sbjct: 28  REIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 87

Query: 79  VARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
             R+ T      + ++M  + K++       NL  + + M +FE+Q   ME+ +E M +A
Sbjct: 88  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDA 147

Query: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAGH-AVPARETEKIDED 191
           +  +      E E   L+ QV D+ G++++  L   P+G  AVPA + + +  +
Sbjct: 148 IDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAE 201

[Close]

BLAST of HG10002321.1 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 48.5 bits (114), Expect = 7.3e-06
Identity = 45/201 (22.39%), Postives = 83/201 (41.29%), Query Frame = 0


Query: 13  ELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           E+    + ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     
Sbjct: 20  EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79

Query: 73  SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQA 132
           +++  V          ++I+  M    K++ +        K ++ +  F+KQ   +++  
Sbjct: 80  AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139

Query: 133 EFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-------------PAGHAV 192
           E M  A+  +      E E   L  QV D+ G+ V+  L               PA  A 
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199

Query: 193 PARETEKIDEDDLSRRLAELK 201
             + +E  + D+L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220

[Close]

BLAST of HG10002321.1 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-05
Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 13  ELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           +L+   ++++RQ R  +KEE++ +  IK+A ++ +M  A+  A+  +  R          
Sbjct: 24  KLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENK 83

Query: 73  SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQK---MSETMDQFEKQFVNME 132
           ++++++   L    +   I +++G + KS E      NL K   M+ TM +F K+     
Sbjct: 84  AQMNSISMHL---GESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAG 143

Query: 133 VQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLP---------QPAGHAVP 192
           V  EF+  A+  +      E E++  + +V      E +  LP          PA  A  
Sbjct: 144 VIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKAST 203

Query: 193 ARETEKIDED-DLSRRLAELKAR 203
           +RE E + E  D    L E++AR
Sbjct: 204 SREEEAVAEGVDDEEELEEIRAR 223

The following BLAST results are available for this feature:

BLAST of HG10002321.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146833.1	9.0e-99	99.01	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]
KAE8651298.1	9.0e-99	99.01	hypothetical protein Csa_002473 [Cucumis sativus]	[more]
XP_022949550.1	1.2e-98	98.52	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_022148096.1	2.6e-98	98.52	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]
XP_038878614.1	2.6e-98	98.52	ESCRT-related protein CHMP1B-like [Benincasa hispida]	[more]

BLAST of HG10002321.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	2.6e-93	89.16	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	5.0e-92	87.68	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	6.9e-86	85.37	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
Q5E994	1.9e-43	48.00	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]
O96552	1.9e-43	46.39	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]

BLAST of HG10002321.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1A1	4.3e-99	99.01	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	4.3e-99	99.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]
A0A1S3BIE8	4.3e-99	99.01	ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 S...	[more]
A0A6J1KC50	5.7e-99	98.52	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]
A0A6J1GD16	5.7e-99	98.52	ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 ...	[more]

BLAST of HG10002321.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	1.9e-94	89.16	SNF7 family protein	[more]
AT1G17730.1	3.5e-93	87.68	vacuolar protein sorting 46.1	[more]
AT2G06530.1	1.4e-09	25.86	SNF7 family protein	[more]
AT5G44560.1	7.3e-06	22.39	SNF7 family protein	[more]
AT5G22950.1	2.8e-05	24.63	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..45
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..173 e-value: 2.8E-39 score: 136.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..172 e-value: 1.0E-11 score: 44.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10002321	HG10002321	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10002321.1-cds	HG10002321.1-cds-Chr11:5540836..5541447	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10002321.1	HG10002321.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body