HG10001422.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001422.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	embryo-specific protein ATS3A-like
Location	Chr09: 16987209 .. 16987646 (+)
Sequence length	438
RNA-Seq Expression	HG10001422.1
Synteny	HG10001422.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

mRNA sequence

ATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

Coding sequence (CDS)

ATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

Protein sequence

MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV

Homology

[Close]

BLAST of HG10001422.1 vs. NCBI nr
Match: XP_008463858.1 (PREDICTED: uncharacterized protein LOC103501893 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKP
Sbjct: 36  MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKP 95

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 96  FQVCMVDQFQVTGKCVTSPICYLYLKLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 155

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFGIKRNRKV
Sbjct: 156 RHVWHGFDTCPGEVTPFGIKRNRKV 180

[Close]

BLAST of HG10001422.1 vs. NCBI nr
Match: KAA0035277.1 (uncharacterized protein E6C27_scaffold228G00690 [Cucumis melo var. makuwa] >TYK14359.1 uncharacterized protein E5676_scaffold84G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.3e-79
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKP
Sbjct: 1   MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKP 60

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRK 145
           RHVWHGFDTCPGEVTPFGIKRNRK
Sbjct: 121 RHVWHGFDTCPGEVTPFGIKRNRK 144

[Close]

BLAST of HG10001422.1 vs. NCBI nr
Match: XP_038902188.1 (embryo-specific protein ATS3A-like [Benincasa hispida])

HSP 1 Score: 303.5 bits (776), Expect = 9.6e-79
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVV+RLNSK VRRVDPL+PQVLDDMSRKP
Sbjct: 37  MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKQVRRVDPLQPQVLDDMSRKP 96

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQ CMVDQFQVTGKCVTSPICYLYLKL GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 97  FQACMVDQFQVTGKCVTSPICYLYLKLVGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 156

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFGIKRNRKV
Sbjct: 157 RHVWHGFDTCPGEVTPFGIKRNRKV 181

[Close]

BLAST of HG10001422.1 vs. NCBI nr
Match: XP_011657238.1 (embryo-specific protein ATS3A isoform X2 [Cucumis sativus] >KGN47335.1 hypothetical protein Csa_022990 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKP
Sbjct: 35  MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKP 94

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLP
Sbjct: 95  FQVCMVDQFQVTGKCVTSPICYLYLKLSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLP 154

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 155 RHVWHGFDTCPGEVTPFGMKRNRKV 179

[Close]

BLAST of HG10001422.1 vs. NCBI nr
Match: XP_004148245.1 (embryo-specific protein ATS3A isoform X1 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKP
Sbjct: 36  MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKP 95

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLP
Sbjct: 96  FQVCMVDQFQVTGKCVTSPICYLYLKLSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLP 155

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 156 RHVWHGFDTCPGEVTPFGMKRNRKV 180

[Close]

BLAST of HG10001422.1 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.3e-17
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPF 61
           Y V ++T+C+  + T + +S+ FGD   N++ VKR                LDD S + F
Sbjct: 50  YTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKR----------------LDDPSSRTF 109

Query: 62  QVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPR 121
           + C  D ++++G C+   +CYLYL   G+D W+P  V++    G  + S  FY+   LP 
Sbjct: 110 EKCSSDTYKISGPCMRD-VCYLYLLRQGSDGWKPENVKI---YGSSIRSVTFYYNLFLPN 160

Query: 122 HVWHGFDTCPG 133
            VW+GF+ C G
Sbjct: 170 SVWYGFNVCNG 160

[Close]

BLAST of HG10001422.1 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-14
Identity = 46/145 (31.72%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPF 61
           Y V + T+C+    T + +S+ FGD   N I   R                LDD S K F
Sbjct: 50  YTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LDDPSTKTF 109

Query: 62  QVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPR 121
           + C  D FQ+ G C T  ICY+YL  +G D W P  V++ S     ++   F +   +P 
Sbjct: 110 EQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVT---FPYNTYVPE 169

Query: 122 HVWHGFDTC----PGEVTPFGIKRN 143
            VW+GF+ C       V   G++R+
Sbjct: 170 SVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of HG10001422.1 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-09
Identity = 39/132 (29.55%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP- 61
           Y V V T+C     T + +S+ FGD + N +   +L                  + R P 
Sbjct: 36  YTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRGPG 95

Query: 62  -FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVL 121
               C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F F + +
Sbjct: 96  GLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFDFSKSV 148

Query: 122 PR-HVWHGFDTC 131
           P+ + W+G + C
Sbjct: 156 PQLNTWYGHNNC 148

[Close]

BLAST of HG10001422.1 vs. ExPASy TrEMBL
Match: A0A1S3CK61 (uncharacterized protein LOC103501893 OS=Cucumis melo OX=3656 GN=LOC103501893 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.5e-80
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKP
Sbjct: 36  MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKP 95

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 96  FQVCMVDQFQVTGKCVTSPICYLYLKLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 155

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFGIKRNRKV
Sbjct: 156 RHVWHGFDTCPGEVTPFGIKRNRKV 180

[Close]

BLAST of HG10001422.1 vs. ExPASy TrEMBL
Match: A0A5D3CVS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00990 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKP
Sbjct: 1   MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKP 60

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRK 145
           RHVWHGFDTCPGEVTPFGIKRNRK
Sbjct: 121 RHVWHGFDTCPGEVTPFGIKRNRK 144

[Close]

BLAST of HG10001422.1 vs. ExPASy TrEMBL
Match: A0A0A0KC84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301050 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.2e-78
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKP
Sbjct: 35  MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKP 94

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQVCMVDQFQVTGKCVTSPICYLYLKL+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLP
Sbjct: 95  FQVCMVDQFQVTGKCVTSPICYLYLKLSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLP 154

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 155 RHVWHGFDTCPGEVTPFGMKRNRKV 179

[Close]

BLAST of HG10001422.1 vs. ExPASy TrEMBL
Match: A0A6J1CYS2 (embryo-specific protein ATS3A-like OS=Momordica charantia OX=3673 GN=LOC111015516 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 133/145 (91.72%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVV+RLNS HV+RVDPLEP+VLDDMSRKP
Sbjct: 35  MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVRRLNSMHVKRVDPLEPEVLDDMSRKP 94

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQ CMVDQFQVTGKCVTSP+CY+YLKLAGADDWRPGFV+VRSLEGPHLSS YFYFRRVLP
Sbjct: 95  FQACMVDQFQVTGKCVTSPVCYVYLKLAGADDWRPGFVKVRSLEGPHLSSGYFYFRRVLP 154

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHGFDTC GEVTPFGIK +RKV
Sbjct: 155 RHVWHGFDTCGGEVTPFGIKHHRKV 179

[Close]

BLAST of HG10001422.1 vs. ExPASy TrEMBL
Match: A0A6J1L2N6 (embryo-specific protein ATS3A-like OS=Cucurbita maxima OX=3661 GN=LOC111499859 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.1e-71
Identity = 129/145 (88.97%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 60
           MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVV  LNSKHVRRVD LEPQVLDDM RKP
Sbjct: 35  MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRKP 94

Query: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120
           FQ CMVD FQVT KCVTSPICYLYLK+AGADDWRPGFV VR LE PHLSSN FYFRRVLP
Sbjct: 95  FQACMVDHFQVTAKCVTSPICYLYLKVAGADDWRPGFVHVRLLESPHLSSNNFYFRRVLP 154

Query: 121 RHVWHGFDTCPGEVTPFGIKRNRKV 146
           RHVWHG DTC G+VTPFGIKR+RKV
Sbjct: 155 RHVWHGLDTCRGDVTPFGIKRSRKV 179

[Close]

BLAST of HG10001422.1 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-18
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPF 61
           Y V ++T+C+  + T + +S+ FGD   N++ VKR                LDD S + F
Sbjct: 50  YTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKR----------------LDDPSSRTF 109

Query: 62  QVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPR 121
           + C  D ++++G C+   +CYLYL   G+D W+P  V++    G  + S  FY+   LP 
Sbjct: 110 EKCSSDTYKISGPCMRD-VCYLYLLRQGSDGWKPENVKI---YGSSIRSVTFYYNLFLPN 160

Query: 122 HVWHGFDTCPG 133
            VW+GF+ C G
Sbjct: 170 SVWYGFNVCNG 160

[Close]

BLAST of HG10001422.1 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 78.2 bits (191), Expect = 6.1e-15
Identity = 46/145 (31.72%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPF 61
           Y V + T+C+    T + +S+ FGD   N I   R                LDD S K F
Sbjct: 50  YTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LDDPSTKTF 109

Query: 62  QVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPR 121
           + C  D FQ+ G C T  ICY+YL  +G D W P  V++ S     ++   F +   +P 
Sbjct: 110 EQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVT---FPYNTYVPE 169

Query: 122 HVWHGFDTC----PGEVTPFGIKRN 143
            VW+GF+ C       V   G++R+
Sbjct: 170 SVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of HG10001422.1 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-10
Identity = 39/132 (29.55%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP- 61
           Y V V T+C     T + +S+ FGD + N +   +L                  + R P 
Sbjct: 36  YTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRGPG 95

Query: 62  -FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVL 121
               C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F F + +
Sbjct: 96  GLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFDFSKSV 148

Query: 122 PR-HVWHGFDTC 131
           P+ + W+G + C
Sbjct: 156 PQLNTWYGHNNC 148

[Close]

BLAST of HG10001422.1 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-10
Identity = 39/132 (29.55%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 2   YAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP- 61
           Y V V T+C     T + +S+ FGD + N +   +L                  + R P 
Sbjct: 8   YTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------LVRGPG 67

Query: 62  -FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVL 121
               C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F F + +
Sbjct: 68  GLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFDFSKSV 120

Query: 122 PR-HVWHGFDTC 131
           P+ + W+G + C
Sbjct: 128 PQLNTWYGHNNC 120

The following BLAST results are available for this feature:

BLAST of HG10001422.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463858.1	1.1e-79	97.24	PREDICTED: uncharacterized protein LOC103501893 [Cucumis melo]	[more]
KAA0035277.1	3.3e-79	97.22	uncharacterized protein E6C27_scaffold228G00690 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_038902188.1	9.6e-79	96.55	embryo-specific protein ATS3A-like [Benincasa hispida]	[more]
XP_011657238.1	1.1e-77	94.48	embryo-specific protein ATS3A isoform X2 [Cucumis sativus] >KGN47335.1 hypotheti...	[more]
XP_004148245.1	1.1e-77	94.48	embryo-specific protein ATS3A isoform X1 [Cucumis sativus]	[more]

BLAST of HG10001422.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q681K2	8.3e-17	33.59	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q6NPM5	8.6e-14	31.72	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q9LYP6	3.7e-09	29.55	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of HG10001422.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK61	5.5e-80	97.24	uncharacterized protein LOC103501893 OS=Cucumis melo OX=3656 GN=LOC103501893 PE=...	[more]
A0A5D3CVS5	1.6e-79	97.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KC84	5.2e-78	94.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301050 PE=4 SV=1	[more]
A0A6J1CYS2	1.4e-75	91.72	embryo-specific protein ATS3A-like OS=Momordica charantia OX=3673 GN=LOC11101551...	[more]
A0A6J1L2N6	6.1e-71	88.97	embryo-specific protein ATS3A-like OS=Cucurbita maxima OX=3661 GN=LOC111499859 P...	[more]

BLAST of HG10001422.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41475.1	5.9e-18	33.59	Embryo-specific protein 3, (ATS3)	[more]
AT5G62200.1	6.1e-15	31.72	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	2.7e-10	29.55	seed gene 3	[more]
AT5G07190.2	2.7e-10	29.55	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 2..130 e-value: 3.6E-42 score: 143.2
None	No IPR available	PANTHER	PTHR31718:SF30	EMBRYO-SPECIFIC PROTEIN	coord: 2..145
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 2..145
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 2..121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10001422	HG10001422	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10001422.1-cds	HG10001422.1-cds-Chr09:16987209..16987646	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10001422.1	HG10001422.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding