HG10000119.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000119.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDnaJ subfamily B member 5
LocationChr09: 1216173 .. 1216460 (-)
Sequence length288
RNA-Seq ExpressionHG10000119.1
SyntenyHG10000119.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATGTCTCTCGATTGGAGGTCTTTACGAGAAGCCTGTCGGGACATGGAACTGCCTACGCTGTCGCCGTCCCACCGCCGAAGGATGCAAAGATATCATCACCGAAATACTTGATGAGAATCTTTGTCCTCTTCCACCCACGCCACCAATGGCTTGAAAATCCAAAGAATTCAGAGAAAATATCGTTTGCGTTTCGGGGATTGAACCGAAACGTCGTTGGTCCATCTCCGGTGGAGAAGAAGGTGGCTCCGCTTGGACCTCCGGCATCCGGAGGTGGCACCTGA

mRNA sequence

ATGGTAAATGTCTCTCGATTGGAGGTCTTTACGAGAAGCCTGTCGGGACATGGAACTGCCTACGCTGTCGCCGTCCCACCGCCGAAGGATGCAAAGATATCATCACCGAAATACTTGATGAGAATCTTTGTCCTCTTCCACCCACGCCACCAATGGCTTGAAAATCCAAAGAATTCAGAGAAAATATCGTTTGCGTTTCGGGGATTGAACCGAAACGTCGTTGGTCCATCTCCGGTGGAGAAGAAGGTGGCTCCGCTTGGACCTCCGGCATCCGGAGGTGGCACCTGA

Coding sequence (CDS)

ATGGTAAATGTCTCTCGATTGGAGGTCTTTACGAGAAGCCTGTCGGGACATGGAACTGCCTACGCTGTCGCCGTCCCACCGCCGAAGGATGCAAAGATATCATCACCGAAATACTTGATGAGAATCTTTGTCCTCTTCCACCCACGCCACCAATGGCTTGAAAATCCAAAGAATTCAGAGAAAATATCGTTTGCGTTTCGGGGATTGAACCGAAACGTCGTTGGTCCATCTCCGGTGGAGAAGAAGGTGGCTCCGCTTGGACCTCCGGCATCCGGAGGTGGCACCTGA

Protein sequence

MVNVSRLEVFTRSLSGHGTAYAVAVPPPKDAKISSPKYLMRIFVLFHPRHQWLENPKNSEKISFAFRGLNRNVVGPSPVEKKVAPLGPPASGGGT
Homology
BLAST of HG10000119.1 vs. NCBI nr
Match: KAF2305159.1 (hypothetical protein GH714_002671 [Hevea brasiliensis])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 18  GTAYAVAVPPPKDAKISSPKYLMRIF--VLFHPRHQWLENPKNSEKISFAFRGLNRNVVG 77
           G  +    P PK+ KISSP    +     L       LE PKNS K+S AF GLN   VG
Sbjct: 78  GAKFIGRPPLPKELKISSPNIPPKALEPPLMPLPPNGLEKPKNSAKMSSAFLGLNLKFVG 137

Query: 78  PSPVEKKVAPLGPPASGGGT 96
           PSPVEKKVAP GPPA GGGT
Sbjct: 138 PSPVEKKVAPPGPPAFGGGT 157

BLAST of HG10000119.1 vs. NCBI nr
Match: KAF2297760.1 (hypothetical protein GH714_002605 [Hevea brasiliensis])

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-09
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 18  GTAYAVAVPPPKDAKISSPKY--------LMRIFVLFHPRHQWLENPKNSEKISFAFRGL 77
           G  +    P PK+ KISSP          LM +     P    LE PKNS K+S AF GL
Sbjct: 78  GAKFIGRPPLPKELKISSPNIPPKALEPPLMPLPPPIPP--NGLEKPKNSAKMSSAFLGL 137

Query: 78  NRNVVGPSPVEKKVAPLGPPASGGGT 96
           N   VGPSPVEKKVAP GPPA GGGT
Sbjct: 138 NLKFVGPSPVEKKVAPPGPPAFGGGT 161

BLAST of HG10000119.1 vs. ExPASy TrEMBL
Match: A0A6A6LZN2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002671 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 43/80 (53.75%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 18  GTAYAVAVPPPKDAKISSPKYLMRIF--VLFHPRHQWLENPKNSEKISFAFRGLNRNVVG 77
           G  +    P PK+ KISSP    +     L       LE PKNS K+S AF GLN   VG
Sbjct: 78  GAKFIGRPPLPKELKISSPNIPPKALEPPLMPLPPNGLEKPKNSAKMSSAFLGLNLKFVG 137

Query: 78  PSPVEKKVAPLGPPASGGGT 96
           PSPVEKKVAP GPPA GGGT
Sbjct: 138 PSPVEKKVAPPGPPAFGGGT 157

BLAST of HG10000119.1 vs. ExPASy TrEMBL
Match: A0A6A6L8J5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002605 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 18  GTAYAVAVPPPKDAKISSPKY--------LMRIFVLFHPRHQWLENPKNSEKISFAFRGL 77
           G  +    P PK+ KISSP          LM +     P    LE PKNS K+S AF GL
Sbjct: 78  GAKFIGRPPLPKELKISSPNIPPKALEPPLMPLPPPIPP--NGLEKPKNSAKMSSAFLGL 137

Query: 78  NRNVVGPSPVEKKVAPLGPPASGGGT 96
           N   VGPSPVEKKVAP GPPA GGGT
Sbjct: 138 NLKFVGPSPVEKKVAPPGPPAFGGGT 161

BLAST of HG10000119.1 vs. ExPASy TrEMBL
Match: A0A0A9CPK0 (DnaJ subfamily B member 5 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-06
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 53 LENPKNSEKISFAFRGLNRNVVGPS-PVEKKVAPLG--PPASGGGT 96
          L+ PKNS K+S A RGLNRN+VGPS PVEK VAP G  PPA GGGT
Sbjct: 10 LDEPKNSAKMSSALRGLNRNIVGPSPPVEKNVAPPGPAPPAPGGGT 55

BLAST of HG10000119.1 vs. ExPASy TrEMBL
Match: A0A0A9K7J3 (DnaJ subfamily B member 5 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 53 LENPKNSEKISFAFRGLNRNVVGPS-PVEKKVAPLG--PPASGGGT 96
          L+ PKNS K+S A RGL RN+VGPS PVEK VAP G  PPA GGGT
Sbjct: 20 LDEPKNSAKMSSALRGLKRNIVGPSPPVEKNVAPPGPAPPAPGGGT 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF2305159.12.4e-0953.75hypothetical protein GH714_002671 [Hevea brasiliensis][more]
KAF2297760.14.0e-0952.33hypothetical protein GH714_002605 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A6LZN21.1e-0953.75Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002671 PE=4 SV=1[more]
A0A6A6L8J52.0e-0952.33Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_002605 PE=4 SV=1[more]
A0A0A9CPK02.6e-0671.74DnaJ subfamily B member 5 OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9K7J31.3e-0569.57DnaJ subfamily B member 5 OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10000119HG10000119gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10000119.1-cdsHG10000119.1-cds-Chr09:1216173..1216460CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10000119.1HG10000119.1-proteinpolypeptide