Cucsat.G8011.T7 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G8011.T7
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTranscription factor IIIB 90 kDa subunit-like isoform X3
Locationctg1556: 2322043 .. 2324146 (-)
RNA-Seq ExpressionCucsat.G8011.T7
SyntenyCucsat.G8011.T7
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGCATTAGCCTTTTGTTTCTTTTTATTTCTTCTGGTGTTTGTATGGTGTTTTAACCGTAGTTTTTCACAAATCATAGGTGAACTCTTACCTAAACAACAGGAAGGAGGCACATTATAAAAAGATTATTTGGGAGCAAATTAACAAAGACTATCTTCAGGTTAAAGGCTTCTTGCCCCTCTTAATATAACCCTTTGATTGCTTCAAAAAAATCTACGATTATACTTAACACTTGAACAAAGTGTTTTATGTTTCAATCATAATTTGGTTTCTAAAAAAGTGATATGCATGATTTTCAGGACCAAGCAGCTAAGAAACAAGGCCTTAATGTCGTTGGAGCTTCAGCTGTGGTTAAAAAATCAAAGAAGGTATTTAAGTAACTACAGTTCGTGACTTTGTGTTGAACAAGAAGTCCCTTATCCTGAAAAACATTGGATAGGAATTTTGCATCTTTACAATTTATAGTATGATTTATGTTTTCTCATTCTGTTGGAAAAAAGCAGAGGCAAAGGAAAACAGAAGCTCCAATAAACATGCCTGCTCAAGCCGATACAGGAACTACACGTGAAATGCAAATTAAAAAGGTATATCAGTGAGATAAACTAATTAATAGATTAATTGGATGGGATTGTGATCTCTAATTTTAGCCCAATGGATCTGTTCTAATCTCAATTTTAATCTCAATTTTCGTGGTACTTTCCAATTCTATGGGGCCAACTTCCACTCTTAATTATTAATTATTGTCTTATTGGTCCTCTATGGACTACATGGATGTTCTTTTATGAAATTTTTCATTCATATATCTTTTTCCAAATCATTTTCTTAAGAAACGCTTGAGTATAGGGTTCAAGAACCATCCACATTATTGTTCCGGGGTCATTTTCGTTTCGGTGTGGGGGAAGAGTATTTATTTTCATAATTCCATGGTTTTTGTGCAAGCTAACTTAGTTTGTTTGGTTGATTTACATCTATCCACTCATTTGCTTATTTCCCACATTCATTCTTCGCAGAGGCTCAGTTCAAAATTCAACTTTGACGTGTTGGACAAACTCTTCTCTGATACAGTATGTTTATCTATGTTTTCTTTTGAAAAAAACTCTTCATTTCTTCTTTAATGTTTTGTTATTTTCATGTTCGAATGCGACTGTAATTTTTTCATCAGTACAGGAAAATAATCCACTCTCAAACAAAGGATGGAAAGAAAGGAGTTTAACCTTCTTGATTATTTCGATTACTACACATGGTTAGTATAACTGCCTAATAATTCGTGCAGCCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCAAGTTGTAAAGAGAATAGTTCATCTGGTCAAATCCATTGTAGGAACGAGCTGGAAGACGACTTCGAAGACAATCTGAATAGTTCATCTGGTCAAATCCATTGTAGGAACGAGCTGGAAGACAACTTCGAAGACAATCATACTGAGACGATGTTTGAAGAAAACTTCGACATTGAAGGTGAAGAAGATCCCACAGAAACTTATGGTAATGAGTATTATGATTTCCAAGATGAGGAAGAGTATGGCTACGGATACAATGACTATGGTGGTGAGGAGGAATATTAGTTGATCAGTTATTTACACAAAAGCTTCTTAATTTTGCCCGAGGTCATAAGATATTGATTCCAGATAACAACTAGAAGTTAATGAGAGAGCTTTAAATTAATTTCGGGTGTTTGGTGACAGATTTAGGAAAACAGCAAGAGTCAGTGTTTCTCTTTTTCCTTTCCTCTATTGGAAGGAGCAAGAAAATCATGAGGGTACATATAAAGCGAGGCTTTCATGAGTCATGGGATTGGGAGTGATAGTGAGTTATATGACAAAAGAAAAAAACTTGGGTGGAGCCTCGGTTGCACCCAGTGATACACATCACTGCGATTTGGGCAATTTTTTTCCTTTCAATTTTGTTTACTTTTGCTATGTATAAAAAAGGGGTGTGTTGGGATTAATCATCCCTCATGACAAAAAGAGGAGAAAGAAGCATAAATAGGATTACTTGAATGGGAGAAATAAAATCGTGCGTATATTTCAAGAAACGTGGCTGAACTTTGTCAGTTCCAATTACTGTCTTGTTATTT

Coding sequence (CDS)

ATGCCTGCTCAAGCCGATACAGGAACTACACGTGAAATGCAAATTAAAAAGAGGCTCAGTTCAAAATTCAACTTTGACGTGTTGGACAAACTCTTCTCTGATACACCTGCACCTGATTCAAGCGAAAAGCAGGGAGCCTCAAGTTGTAAAGAGAATAGTTCATCTGGTCAAATCCATTGTAGGAACGAGCTGGAAGACGACTTCGAAGACAATCTGAATAGTTCATCTGGTCAAATCCATTGTAGGAACGAGCTGGAAGACAACTTCGAAGACAATCATACTGAGACGATGTTTGAAGAAAACTTCGACATTGAAGGTGAAGAAGATCCCACAGAAACTTATGGTAATGAGTATTATGATTTCCAAGATGAGGAAGAGTATGGCTACGGATACAATGACTATGGTGGTGAGGAGGAATATTAG

Protein sequence

MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYGGEEEY
Homology
[Close]
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match: XP_004142699.1 (uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus])

HSP 1 Score: 276 bits (705), Expect = 6.49e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 60
           MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC
Sbjct: 97  MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 156

Query: 61  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 120
           RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD
Sbjct: 157 RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 216

Query: 121 FQDEEEYGYGYNDYGGEEEY 140
           FQDEEEYGYGYNDYGGEEEY
Sbjct: 217 FQDEEEYGYGYNDYGGEEEY 236

[Close]
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match: XP_011653794.1 (uncharacterized protein LOC101217202 isoform X1 [Cucumis sativus])

HSP 1 Score: 276 bits (705), Expect = 6.72e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 60
           MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC
Sbjct: 98  MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 157

Query: 61  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 120
           RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD
Sbjct: 158 RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 217

Query: 121 FQDEEEYGYGYNDYGGEEEY 140
           FQDEEEYGYGYNDYGGEEEY
Sbjct: 218 FQDEEEYGYGYNDYGGEEEY 237

[Close]
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match: KAE8649624.1 (hypothetical protein Csa_012863 [Cucumis sativus])

HSP 1 Score: 276 bits (705), Expect = 5.72e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 60
           MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC
Sbjct: 236 MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 295

Query: 61  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 120
           RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD
Sbjct: 296 RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 355

Query: 121 FQDEEEYGYGYNDYGGEEEY 140
           FQDEEEYGYGYNDYGGEEEY
Sbjct: 356 FQDEEEYGYGYNDYGGEEEY 375

[Close]
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match: XP_008444162.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31660.1 transcription factor IIIB 90 kDa subunit-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (462), Expect = 2.86e-55
Identity = 105/140 (75.00%), Postives = 109/140 (77.86%), Query Frame = 0 

Query: 2   PAQADTG-TTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 61
           PAQADT  TT EM IKKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC
Sbjct: 98  PAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHC 157

Query: 62  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 121
            NELEDDFEDN                     HTET+FEEN DIEG EDPTETYGNEYYD
Sbjct: 158 INELEDDFEDN---------------------HTETVFEENLDIEG-EDPTETYGNEYYD 215

Query: 122 FQDEEEYGYGYNDYGGEEEY 140
           FQ+EEEYGYGY+DYGGEEEY
Sbjct: 218 FQNEEEYGYGYDDYGGEEEY 215

[Close]
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match: XP_016899849.1 (PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo])

HSP 1 Score: 182 bits (462), Expect = 2.95e-55
Identity = 105/140 (75.00%), Postives = 109/140 (77.86%), Query Frame = 0 

Query: 2   PAQADTG-TTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 61
           PAQADT  TT EM IKKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC
Sbjct: 99  PAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHC 158

Query: 62  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 121
            NELEDDFEDN                     HTET+FEEN DIEG EDPTETYGNEYYD
Sbjct: 159 INELEDDFEDN---------------------HTETVFEENLDIEG-EDPTETYGNEYYD 216

Query: 122 FQDEEEYGYGYNDYGGEEEY 140
           FQ+EEEYGYGY+DYGGEEEY
Sbjct: 219 FQNEEEYGYGYDDYGGEEEY 216

[Close]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match: A0A0A0L0J7 (BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 SV=1)

HSP 1 Score: 276 bits (705), Expect = 2.29e-91
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 60
           MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC
Sbjct: 157 MPAQADTGTTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 216

Query: 61  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 120
           RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD
Sbjct: 217 RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 276

Query: 121 FQDEEEYGYGYNDYGGEEEY 140
           FQDEEEYGYGYNDYGGEEEY
Sbjct: 277 FQDEEEYGYGYNDYGGEEEY 296

[Close]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match: A0A5D3E7S6 (Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00100 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 1.39e-55
Identity = 105/140 (75.00%), Postives = 109/140 (77.86%), Query Frame = 0 

Query: 2   PAQADTG-TTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 61
           PAQADT  TT EM IKKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC
Sbjct: 98  PAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHC 157

Query: 62  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 121
            NELEDDFEDN                     HTET+FEEN DIEG EDPTETYGNEYYD
Sbjct: 158 INELEDDFEDN---------------------HTETVFEENLDIEG-EDPTETYGNEYYD 215

Query: 122 FQDEEEYGYGYNDYGGEEEY 140
           FQ+EEEYGYGY+DYGGEEEY
Sbjct: 218 FQNEEEYGYGYDDYGGEEEY 215

[Close]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match: A0A1S3B993 (uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 1.39e-55
Identity = 105/140 (75.00%), Postives = 109/140 (77.86%), Query Frame = 0 

Query: 2   PAQADTG-TTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 61
           PAQADT  TT EM IKKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC
Sbjct: 98  PAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHC 157

Query: 62  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 121
            NELEDDFEDN                     HTET+FEEN DIEG EDPTETYGNEYYD
Sbjct: 158 INELEDDFEDN---------------------HTETVFEENLDIEG-EDPTETYGNEYYD 215

Query: 122 FQDEEEYGYGYNDYGGEEEY 140
           FQ+EEEYGYGY+DYGGEEEY
Sbjct: 218 FQNEEEYGYGYDDYGGEEEY 215

[Close]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match: A0A1S4DV37 (uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 1.43e-55
Identity = 105/140 (75.00%), Postives = 109/140 (77.86%), Query Frame = 0 

Query: 2   PAQADTG-TTREMQIKKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHC 61
           PAQADT  TT EM IKKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC
Sbjct: 99  PAQADTEETTHEMLIKKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHC 158

Query: 62  RNELEDDFEDNLNSSSGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYD 121
            NELEDDFEDN                     HTET+FEEN DIEG EDPTETYGNEYYD
Sbjct: 159 INELEDDFEDN---------------------HTETVFEENLDIEG-EDPTETYGNEYYD 216

Query: 122 FQDEEEYGYGYNDYGGEEEY 140
           FQ+EEEYGYGY+DYGGEEEY
Sbjct: 219 FQNEEEYGYGYDDYGGEEEY 216

[Close]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match: A0A1S3B9Q2 (uncharacterized protein LOC103487591 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487591 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 4.85e-50
Identity = 94/125 (75.20%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 16  KKRLSSKFNFDVLDKLFSDTPAPDSSEKQGASSCKENSSSGQIHCRNELEDDFEDNLNSS 75
           KKRLSSKF+FDVLDKL  DTPAPDSSEKQGASSCKENSSSGQ HC NELEDDFEDN    
Sbjct: 85  KKRLSSKFDFDVLDKLLYDTPAPDSSEKQGASSCKENSSSGQSHCINELEDDFEDN---- 144

Query: 76  SGQIHCRNELEDNFEDNHTETMFEENFDIEGEEDPTETYGNEYYDFQDEEEYGYGYNDYG 135
                            HTET+FEEN DIEG EDPTETYGNEYYDFQ+EEEYGYGY+DYG
Sbjct: 145 -----------------HTETVFEENLDIEG-EDPTETYGNEYYDFQNEEEYGYGYDDYG 187

Query: 136 GEEEY 140
           GEEEY
Sbjct: 205 GEEEY 187

The following BLAST results are available for this feature:
BLAST of Cucsat.G8011.T7 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G8011.T7 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142699.16.49e-92100.00uncharacterized protein LOC101217202 isoform X2 [Cucumis sativus][more]
XP_011653794.16.72e-92100.00uncharacterized protein LOC101217202 isoform X1 [Cucumis sativus][more]
KAE8649624.15.72e-90100.00hypothetical protein Csa_012863 [Cucumis sativus][more]
XP_008444162.12.86e-5575.00PREDICTED: uncharacterized protein LOC103487591 isoform X2 [Cucumis melo] >TYK31... [more]
XP_016899849.12.95e-5575.00PREDICTED: uncharacterized protein LOC103487591 isoform X1 [Cucumis melo][more]
BLAST of Cucsat.G8011.T7 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0J72.29e-91100.00BRF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G363410 PE=4 S... [more]
A0A5D3E7S61.39e-5575.00Transcription factor IIIB 90 kDa subunit-like isoform X3 OS=Cucumis melo var. ma... [more]
A0A1S3B9931.39e-5575.00uncharacterized protein LOC103487591 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4DV371.43e-5575.00uncharacterized protein LOC103487591 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3B9Q24.85e-5075.20uncharacterized protein LOC103487591 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..58

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G8011Cucsat.G8011gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8011.T7.E1Cucsat.G8011.T7.E1exon
Cucsat.G8011.T7.E2Cucsat.G8011.T7.E2exon
Cucsat.G8011.T7.E3Cucsat.G8011.T7.E3exon
Cucsat.G8011.T7.E4Cucsat.G8011.T7.E4exon
Cucsat.G8011.T7.E5Cucsat.G8011.T7.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G8011.T7.C3Cucsat.G8011.T7.C3CDS
Cucsat.G8011.T7.C2Cucsat.G8011.T7.C2CDS
Cucsat.G8011.T7.C1Cucsat.G8011.T7.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G8011.T7Cucsat.G8011.T7-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006383 transcription by RNA polymerase III
biological_process GO:0070897 transcription preinitiation complex assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0000126 transcription factor TFIIIB complex
molecular_function GO:0000995 RNA polymerase III general transcription initiation factor activity