Cucsat.G80.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G80.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein LOL1 isoform X1
Location	ctg1: 1269811 .. 1271349 (-)
RNA-Seq Expression	Cucsat.G80.T2
Synteny	Cucsat.G80.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTATGACTACTCAACCCAAAGCTTCGAGTTCGGATATAATTTGAATTATTTTCCTGTTAGATCTGAGAACAAGTAACAAATTTCTAGTGTGAGATGGCTATTATTGTTTGTATACAAGGCTAAGAAATTTTTAGTGCTAAGGTGACAAGCTCTCTACCAACACGAACAAAGAAATTTAGGGAGAAAATTTGATATTCATATAACTAAAGTTAGATCCTATATTTACGAAAATGACTAATGAATTGATTTCTCGTCATACATGCTATCTTTTAAGAATTGAAATTTGTTTGGGCAATAGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGAAATTGTTTATTATTGAAAAAATCAAAACCACAATTTCATAAATCATCATTATGGCCAAAGAGATAAGCTATACACTCAAATTGTTTTGAAGTGATAAGTTCAAATCTCATGGGAGGTTGAGCTTCATTGACTATCTGTGAGGATACTACCTAACCAGAATCAATATCTGAAATATATTGAGAATTAAAGAAGAACTACAATATAATCCAAGTTTACTCCACAAAATAGTCTCTCCTTCACTCACTCACCCTCATACTATTAATACACATCCAGTAACTAACTTTCCATCTAATGGCCAATATATCCCTTTTAACATACTAATATTCCTATCTGGGTACCTAATACCATCTTTGCGTCTATGGTCAATCTTGTTGGTTGCTTTCTCCTCTGATTATTGATTGAAGAAAGGGTGGAAGTAGTGAAGTTGCTACTAAATCTTGTGGAGTCTAGGTGGTTGAGTTTGCCTAGATATTCATAATTATTAACAAAACAAATAAATCAATGATGATGGTGATTTGCAAGTTCCTATATGCTCGGAATTGTTTATAGTTAGGATATGATTGGTTTCGAATATGACCCTTAAGCAGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGG

Coding sequence (CDS)

CATTGGTATTATCTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCAGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGG

Protein sequence

HWYYLVQFSFDFLSYVSQFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG

Homology

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-19
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           +PF P    Q+Q++CSGC+NLL+YPAGATS+CCA+C  VT VP  G  MA+LVC GC+TL
Sbjct: 54  VPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTL 113

Query: 125 LMYSRG 131
           LMY RG
Sbjct: 114 LMYIRG 119

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 71  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.7e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSR 130
           Q+QI+C GC+N+L+YP GA S+CCA+CHAV +  P+ G+ +A L+C GC TLLMY+R
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTR 58

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSR 130
           Q+QI+C GC+++L YP+GA S+CCALC A+T  P P   + MA L+C GC TLLMY+R
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTR 59

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG 131
           Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

[Close]

BLAST of Cucsat.G80.T2 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 9.40e-75
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 14  SYVSQFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCC 73
           ++ S FIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCC
Sbjct: 327 AFKSLFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCC 386

Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Sbjct: 387 QNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 443

[Close]

BLAST of Cucsat.G80.T2 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 214 bits (545), Expect = 1.63e-68
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 24  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCK 83
           LSSSSKSR GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCK
Sbjct: 10  LSSSSKSRDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCK 69

Query: 84  NLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           N+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Sbjct: 70  NMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 116

[Close]

BLAST of Cucsat.G80.T2 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 3.24e-42
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 125 LMYSRG 130
           LMYSRG
Sbjct: 61  LMYSRG 66

[Close]

BLAST of Cucsat.G80.T2 vs. NCBI nr
Match: XP_008448702.2 (PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900660.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo])

HSP 1 Score: 142 bits (357), Expect = 1.98e-40
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 125 LMYSRG 130
           LMYSRG
Sbjct: 61  LMYSRG 66

[Close]

BLAST of Cucsat.G80.T2 vs. NCBI nr
Match: XP_038903355.1 (protein LSD1-like [Benincasa hispida])

HSP 1 Score: 130 bits (327), Expect = 3.45e-36
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           MPFPPVTCC+N I+CSGCK LLIYPAGAT ICCALCH V+PVPTSGLTMARLVCSGC+TL
Sbjct: 1   MPFPPVTCCENHIVCSGCKILLIYPAGATFICCALCHTVSPVPTSGLTMARLVCSGCHTL 60

Query: 125 LMYSRG 130
           LMYSRG
Sbjct: 61  LMYSRG 66

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 7.89e-69
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 24  LSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCK 83
           LSSSSKSR GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCK
Sbjct: 10  LSSSSKSRDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCK 69

Query: 84  NLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           N+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG
Sbjct: 70  NMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 116

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL
Match: A0A0A0L592 (zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011780 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 2.66e-55
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 31  RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPA 90
           RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPA
Sbjct: 3   RYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPA 62

Query: 91  GATSICCALCHAVTPVPTS 109
           GATSICCALCHAVTPVPTS
Sbjct: 63  GATSICCALCHAVTPVPTS 81

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 9.57e-41
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 125 LMYSRG 130
           LMYSRG
Sbjct: 61  LMYSRG 66

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 7.39e-33
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 65  MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 124
           MP PPVTCCQ++++CSGCKNLLIYP GATSICC LCH+V+PVPT GL MARLVC GC+TL
Sbjct: 1   MPIPPVTCCQSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTPGLEMARLVCKGCHTL 60

Query: 125 LMYSRG 130
           L++SRG
Sbjct: 61  LLFSRG 66

[Close]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL
Match: A0A1R3I3V3 (Zinc finger, LSD1-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_15135 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.46e-24
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 66  PFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLL 125
           P PP    Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLL
Sbjct: 17  PPPPANAAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 76

Query: 126 MYSRG 130
           MY RG
Sbjct: 77  MYIRG 81

[Close]

BLAST of Cucsat.G80.T2 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-19
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 61  NITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSG 120
           N   + F   T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC G
Sbjct: 52  NKNNLRFVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 111

Query: 121 CYTLLMYSRG 131
           C+TLLMY RG
Sbjct: 112 CHTLLMYIRG 121

[Close]

BLAST of Cucsat.G80.T2 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 71  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

[Close]

BLAST of Cucsat.G80.T2 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 71  TCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRG 130
           T  Q+Q++CSGC+NLL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RG
Sbjct: 29  TSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 88

[Close]

BLAST of Cucsat.G80.T2 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.7e-12
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG 131
           Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 65

[Close]

BLAST of Cucsat.G80.T2 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.7e-12
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 74  QNQIMCSGCKNLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRG 131
           Q+Q++C GC+NLL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RG
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRG 60

The following BLAST results are available for this feature:

BLAST of Cucsat.G80.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	4.7e-19	63.64	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	1.5e-17	66.67	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	7.7e-14	57.89	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	1.9e-12	56.90	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	1.4e-10	49.15	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Cucsat.G80.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650032.1	9.40e-75	96.58	hypothetical protein Csa_010851 [Cucumis sativus]	[more]
XP_008448703.1	1.63e-68	94.39	PREDICTED: protein LOL1 isoform X1 [Cucumis melo]	[more]
XP_031738784.1	3.24e-42	100.00	protein LSD1 [Cucumis sativus]	[more]
XP_008448702.2	1.98e-40	96.97	PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: pro...	[more]
XP_038903355.1	3.45e-36	87.88	protein LSD1-like [Benincasa hispida]	[more]

BLAST of Cucsat.G80.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKC0	7.89e-69	94.39	protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A0A0L592	2.66e-55	100.00	zf-LSD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011780 PE=...	[more]
A0A1S3BJQ2	9.57e-41	96.97	protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A6J1CWA3	7.39e-33	77.27	protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1	[more]
A0A1R3I3V3	2.46e-24	64.62	Zinc finger, LSD1-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_15135 PE=4 S...	[more]

BLAST of Cucsat.G80.T2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.1	3.7e-19	60.00	lsd one like 1	[more]
AT1G32540.2	1.1e-18	66.67	lsd one like 1	[more]
AT1G32540.3	1.1e-18	66.67	lsd one like 1	[more]
AT4G20380.2	9.7e-12	49.15	LSD1 zinc finger family protein	[more]
AT4G20380.1	9.7e-12	49.15	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 79..103 e-value: 2.2E-10 score: 40.1
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 116..130 e-value: 6.7E-4 score: 17.2 coord: 76..105 e-value: 2.9E-12 score: 44.0
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 63..130
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 63..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G80	Cucsat.G80	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G80.T2.E1	Cucsat.G80.T2.E1	exon
Cucsat.G80.T2.E2	Cucsat.G80.T2.E2	exon
Cucsat.G80.T2.E3	Cucsat.G80.T2.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G80.T2.C3	Cucsat.G80.T2.C3	CDS
Cucsat.G80.T2.C2	Cucsat.G80.T2.C2	CDS
Cucsat.G80.T2.C1	Cucsat.G80.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G80.T2	Cucsat.G80.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus