Cucsat.G6565.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G6565.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Histone H2B
Location	ctg1451: 190690 .. 196903 (-)
RNA-Seq Expression	Cucsat.G6565.T3
Synteny	Cucsat.G6565.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAGATTCATAGATTTTAGGGTTTTCTCGTGTAAAAAAGCAGGATCACTGTTCTGGATCGTTGATTTCTTTTGCTCTTGTTGCATATTTTGGAATTGAATGAATGAAAATCGGTTTACATGATTCTAATTCTTTTGTTAATTGCTTGGTCATGTCCTCATCGTTCAGATTGTTTGCTGGGCGGTCTCTGAAGATTTACCATAATTTCACCTTAACAAATTTGTATGCCTGAGACTGAGTCTGACTTCAACTAGTATTTTGAGTTTGTTGCTTTTCAATTGTCCAGGCAGAAGGTATTGATTCAATGCCGTTGAATATGCTTCAAATTTTTCCTCTTAGTTCGAGTTCTAGGGTGAATAATTTTTTATTTATGTTTTGAAGATGCCTGTGAAAATGATTGTACAAACTGTAGATTTCTGTGTTTTTAATGGGAACTTTTCATTGTGGGGTTTCTACAATTTCTTGGACAATGATTTCTGTGTCCCTTATGTTTGGTATCTTCAATTTGGTATCAGGGTGTTGAATCCATAGGCATAAATCTTGAATCCAACCCCATTTTATTGATTAGTGGTTAAAGTTGTCATCCACGGGTGATGTTCTGAGTTAATTCAACACGTTGGAGAATTTTCAACCAATAAACAGTCCCATCAATCCACAGGTTAAGCTTCACATTGTGGCCATTTCTGAGCATCTATTGTTTGAGAATGAAAAATTATTGCTTTCCTTTTTACCTTTGGATGATTTTGAGTTTAGGCAAGGGAGATCTAAGTGCTTTTTGTCCTTTTTACCTTAGAATGAAAAATTATTGCTTTCCTACTCTGTCTCAAGGCCTCCTCTTTGTTTGACCAGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTAGTTGATTCAGAATTAATCGTAAAATAGCTTCACCTTTCCATGTATTATTAACTGCAATATGGGATCATTCCTGCATTATCACTGCTATTGTCACCTGATGACTTTGATAAGCCTGAGTTCTCATCAGTTACGATTCAGCGGGATTTATTTTATGGTTATGATACACTAATGGAGAATGTTCTCCATCAGATCCTTCCCACATAAATTTTGCTCATCACTAGGCAAGGGAGGGCCAACGTGAAAAACCTTTTCAACTAAACTTGAAATTTGCACCAGTGGTTTAGTTATTGATTGAATCATTATGGTCGTTTGTGTTTTTCTTTTCTTTCTGTTTCTGATGAATGCTAAGTGAAAGAAATGTGTCATATATAAAGAACTAAAAAACTTCAATGTTACCTGCTGGGTGCTGTTAAATATTTACTATGATTTAGAAGAGATTATGTTTCAGGAAACAAGAGCATTTGATAGGAACAGTCCTGCTGATATGGTAGTACTGTACTTCGTGTATATTAGTAAACTTGGTCTACAAAATCACATTTGTTTTTTGTTGAACATCACAATGTCTTGCTTCTGAAAGGAACATTTTCACAGGTTACAGGGAGGCAGGACCAAGCAAAACCTTTACCTTTCAAGGTGGATTCTAATGGTTCCTGGGGATTTTCTGGAGCAAATAAGGGTAACCCAAGGATTAGTGCCAAGTTTATTTCTCCTTGTTACTATATCAACAAGTAAAGATTTCACTCTTTTTCTCCTGTATTCACATTTGAACAATGCATAGCTTAAGATTGTTGGAACCATCCCTTACATATCTGATATTATACATCAATAGATATGCTTATGCATTTATGATGATTTGGTACCTCATGCATTAAGCGATAAATTTTTGGTAGCTTAGTATACTGGCTGATAGAGTGATAGTTTATTGACAGTGGGCTATTTCTCTCAATTCTATTCCAAATTTGGCCAGTCTTCTCTGGCATCTCTGTCTTCCTTATAAACTTCTTACTACTAACAGCTTAACTAACTCGCTTTTCCTAACCATATGCATAAAAAAGTTCTTTTCAATGATTATTCTACCTCCTTGATCCTACAAATGACCAATTGGACATGGGCATAAGCTTCATTCACTATCAAGTGTCAGTTTGCGTTATACATGTAAACAGATTGTCCAAGGATTCTTGAATCCAAAGCTGCAAATTTGAAGCAAATTATTTAATGTGTATTTGAACATTGTATGACCAACTATGAGTTTATGCTCAAATGACAAAAAGTTTCGAGCCTTACTAATTAAGGGATCAATTAGGATATAAATAACACATACACATACCATGATGACCATCCGGAATTTGGCAATTTTTTTTAAAAAGAAAAAAGTTTCATTTCTCACTCTTTCTTTTTGGATGCATTCCTGGATACAAATTTTAATAATGTTAGGCTGAGCAGGTAAGTATTATTCTTAAGAAATGTTTAATATTTGAAGTCAAGTATTATTTTATAATGTAGGGAGGGAAACGATAGTTAATAACAAGTGACCAGAGGAACCCAAGCACGTGAACCTTGAGACTTGAGTGTATTAGACCTGTTTAACGTTTCAGAATTTTTATAATTTTTCCACCATGAGAAAGACAGTATGTGCCATTTGAAATTATAGCTCTAGGAAATGGAAGGCAAAAAGAAATTAGAGAACTTTGATAGGAAAATGTTAGGAAAATTTCAAGTGCATTTGCTGTGCATCTTTGATCACAGGAATGTGTCATCAGTTATGAAGGTGAGGATATTGAGATCACGGTAAATGAACAATTGCTTCAAGTTTGGTGAAATGAGCATGGGGTAGGAAATGAATAATGGAGTAGTCTTGAATGAGTATTCCAAGGAGGAGTACACCAGATTTTTTAATTGCCAAAATAGGTTTTAGGAATTTATATCCTTATTCCATTTTATGCATTCAAGAAGGAAGGCAAAACAGGCTGTGGTGTAAGGAAGGGAGAAATGAATAGTAAGAACTAACTAGAGGTTCTTTAGTTTTGTGAAATTACGAGACATCTCAAAACTTGACTCTTGGAGCTTTTCTCAAAAAAAAAAAAAAAAAAAAAAACAGTTACAATACAAGTCCTCTAGCATAAAATTAGCAACACCCTACTGAATTTATTGGCAACTGTTTCAACATTCTATTTCCTTTTGTTTAAGTGCTAAATATTATGAATCCCTTATACACAAATTCCTATAGGTTTTAACTTTACTGTAAAGTTTTCTTCGGAGTGGAGATTGACACAAAGCTTCCTTTACTTGGCGATAAAAAATGGGTAATGTGGATTTCCTCCTTCAATGTGCTAGTGGGTCCTGGAAAAATTCGTTCTATTGTATGTACTGCTCGAAACTTCTTCCAGTTTTCAATGGCCGGTCCTGTTTGATGGCAGGCAAGCAGTGCGGTGTTAATTAGATCTGTTTCTTATTTTTATGATATACTATCATCTCCACCGTTATTGGTCATTCAACATGCATTATATGTGATATTACAGTGTTTGACTTCCTAAGTTTGCTTTTTCTATTAGGTAGTTCCTCGATGGCACAAGCATTGGACTTGGAATAAGGTATATGATGGAGACATGATTGTTCTTTAGGGTCAAGAGAAGATATTTTTATCAATGGAAGGTTCGACAAATGTAAAGAATACACTAAAATAACGTTCACACCATAGCATTCAGAAATTGGCTGAATCGGCATGGAAAGGGCCAAAACCGAATAGTTCAGAGCTAGCAGCCACTAGCGCCTGTCATCAACAGTTCTATCTAGAACTCAGGTACTGAAAATTACCAGCATCTTGATTGTTTTTATAAAACTAAATGCTAAAAAGCATGAACACTTCAATTTAACTAGGAATATTCGTGTACAATTTGTCCAATTTCTACCATTATTGTAAGTATGTAAGTCCAATTTTAACGATCCCAAGTGTAAGGACCTAATTTTTACTATTAAAAATAAGTGTGGTTGATGGGACTATTCTTTGGGTTGATTTTTGTCTTCTATTATCATCTCCACTACAGACTACAGATGCTGGACAGATTTGAGCAACACACTCCATTGTTTCATCATGTAAAGGAGCTTATAAAACATTTCAAACAGTGCAAAATTGCAAAAGCTCCTAATTGGTGCAGCTGTAGTTTTTGCGGCCAACGCCGGCATCTCTTCTGCTTTACAGATATGTATTATTCTCACTAGTCTTGCACTCACAAGCACCGGCTTGGCTTACGCTCTGTTTGAACTTCAAAGTGAATTGTGTTTTTGAACTTCAAAAGATTTGTGTGTTCATTGACTATGTTCATGGGGAGATTGATTAGAAGATACCATTAGAGATTGAGAAAGAAATTGTTGTTTAGAGAAGTAGGATTTTAACCAAGTAATGTTATATAGATTTTACAAAGGTATCATGGTTGAACATTTTAAAACAAAAGTAGAGATGAATGTATCCTTTCCTTTTTCGTAGTCTCGTATTTTGTTGATGGATTTTTAATTTTGATTCTTTACAATCAAAACACATGCTTTTGTCCTTCAATTATTCGTACCTCATTTTTTTTCTAATTAGGTAAAGATTTTACGAATACGATTTTATAGAATTTCAAGAAATGATCTTTTGGTTTAAGTTATCATGAATGTCAGAATTGTTGCATTTCTTACCAATCTTACAATATTATTATATAATGGTTTTATTGTATTTCTAAAGTAAAACTTTTAATAAGGTGTGGATCAAAATCGAATATTTTGAATATTCAAGAATGTAAATTGATTTTAAAACTTACAATAAAACATTACAATAACACCATGATCCTCGAGGAGGGGTGGGTGGGTATTAAAAATAACTCTAATAAACTTAAGAAGACCATTTCATTAAATTAATTTCAATACATACTATTTCTTCCAAGAGGTCTCAAACTTTGGGGGAAAAAAAACATGATAAAATGTGTTTCCAAGTTATAAACACTAAGAATGTCACTGATATAAATCATATACATGTTGATTTGTTTAAAATGTTTGATTTCTAATTTAAATTAAAAAAGATTTCGCATTTTATCAATATTTTCGACCTCAGTGCTTTAACAAAGAACACAAAAAAGAGAGAAAAAATAAAATAAATTTAGAAGTAATATGTAGAAGAGATGGCAGCCAAGAAGAAGAGAAGATAAGAACCACGCTTATATCAAAAGCAAATTAAAACCACAAATTCATGAACAATGGTGGGGAATTGATTAATGACTATGACAAAGATCTAACTGGGCCACAAAGCTTCTCCAAATTGGAGAAGGAAACTACACCACACAACAAACCACAAACACTTAATTTTTTTTTGTTTTGTAGTGAGATATTTCTCATTATAGTGTGTCTAAAGGAAAAAAAAGGACAATAAACCAATTTACTTGGCCAAAATCTGCTGTTGTGCTTGATTCTCTTGCTGCTGTTGATAGTTGAGTGGCCTTCTGAACAACATTATGTGTGGCTCTGGGCGATGAATTGCATAATGAACCCATCCACGGCTTTGTTGAACACCGATCGCTCTCCATTCATTCTGTTCATCATCAACATCAAATTCCATTACTTCATCTTAAAGGTATTCAGATTATGAGAGAGATCTCTTTCAATTTTTTAGTTCATTTTCTTTTCAATTAGCGGAACAGGATTTCACACAAGAAATTATGATATATTTACTTCAGATTAATCATCACGCAATCAATCTATTGCATAATCCAACTACAAAGATCTCAAATGTATTCAGATTAATCATCACGCAATCAATCTATTGCATAATCAAACTACACAGATCTCAAATGTATTCAGATTATATCGCACAATCACATTGAAAGCAGCCGATGATTGTGAGAGAAATCTCTTCCACTTCCAATTTAGTTCGTTTCCGACTATCAAAACAGGATTCGACCCAAGAAATAATGATTATAGAGAAGAATCATGAAATACTTACTTCAGAAAGAAGGCGATTCTTGGGGAGAAGTTTCGCCACTTCAGGAGTAAGCACC

Coding sequence (CDS)

AAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTTACAGGGAGGCAGGACCAAGCAAAACCTTTACCTTTCAAGGTGGATTCTAATGGTTCCTGGGGATTTTCTGGAGCAAATAAGGGTAACCCAAGGATTAGTGCCAAGTTTATTTCTCCTTGTTACTATATCAACAAGTAAAGATTTCACTCTTTTTCTCCTGTATTCACATTTGAACAATGCATAG

Protein sequence

KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPDENGWERADATTPPRLQGGRTKQNLYLSRWILMVPGDFLEQIRVTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA

Homology

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BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot
Match: O49118 (Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LARYNKK
Sbjct: 48  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKK 107

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 108 PTITSREIQTAVRLVLPGE 126

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot
Match: Q9LQQ4 (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-34
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KK++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 51  KKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 110

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 111 PTITSREIQTAVRLVLPGE 129

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-34
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKK
Sbjct: 51  KKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKK 110

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 111 PTITSREIQTAVRLVLPGE 129

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot
Match: Q1SU99 (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR KKS+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESS+LARYNKK
Sbjct: 41  KKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKK 100

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 101 PTITSREIQTAVRLVLPGE 119

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-34
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKK
Sbjct: 51  KKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKK 110

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 111 PTITSREIQTAVRLVLPGE 129

[Close]

BLAST of Cucsat.G6565.T3 vs. NCBI nr
Match: RDX60372.1 (Histone H2B.4, partial [Mucuna pruriens])

HSP 1 Score: 152 bits (384), Expect = 5.09e-44
Identity = 80/104 (76.92%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKK
Sbjct: 41  KKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKK 100

Query: 61  PTITSREIQTAVRLVLPDENGWERADATTPPRLQGGRTKQNLYL 104
           PTITSREIQTAVRLVLP E         T   +Q G  K+ + L
Sbjct: 101 PTITSREIQTAVRLVLPGELAKHAVSEGTKAEVQQGGAKEEIPL 144

[Close]

BLAST of Cucsat.G6565.T3 vs. NCBI nr
Match: KAF7152864.1 (hypothetical protein RHSIM_Rhsim01G0225200 [Rhododendron simsii])

HSP 1 Score: 152 bits (385), Expect = 7.69e-44
Identity = 83/127 (65.35%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKK
Sbjct: 52  KKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKK 111

Query: 61  PTITSREIQTAVRLVLPDENGWERADATTPPRLQGGRTKQNLYLSRWILMVPGDFLEQIR 120
           PTITSREIQTAVRLVLP E         T    +  R K+ L        +P D  + +R
Sbjct: 112 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKNPRDKRQLERRLSQRQLPLDLAKSMR 171

Query: 121 VTQGLVP 127
             +  VP
Sbjct: 172 DVKATVP 178

[Close]

BLAST of Cucsat.G6565.T3 vs. NCBI nr
Match: XP_016903018.1 (PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo])

HSP 1 Score: 151 bits (381), Expect = 9.74e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. NCBI nr
Match: XP_004139453.1 (histone H2B.7 [Cucumis sativus] >KGN64858.1 hypothetical protein Csa_022751 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 9.74e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. NCBI nr
Match: XP_022964661.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970348.1 histone H2B.7-like [Cucurbita maxima] >XP_023519437.1 histone H2B.7-like [Cucurbita pepo subsp. pepo] >KAG6583589.1 Histone H2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019290.1 Histone H2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (381), Expect = 9.74e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL
Match: A0A371E2V8 (Histone H2B (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_61489 PE=3 SV=1)

HSP 1 Score: 152 bits (384), Expect = 2.47e-44
Identity = 80/104 (76.92%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKK
Sbjct: 41  KKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKK 100

Query: 61  PTITSREIQTAVRLVLPDENGWERADATTPPRLQGGRTKQNLYL 104
           PTITSREIQTAVRLVLP E         T   +Q G  K+ + L
Sbjct: 101 PTITSREIQTAVRLVLPGELAKHAVSEGTKAEVQQGGAKEEIPL 144

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL
Match: A0A0A0LV55 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.71e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL
Match: A0A5A7SNI2 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00170 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.71e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL
Match: A0A6J1I3M0 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.71e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL
Match: A0A0A0LST8 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 4.71e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 45  KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 104

Query: 61  PTITSREIQTAVRLVLPDE 79
           PTITSREIQTAVRLVLP E
Sbjct: 105 PTITSREIQTAVRLVLPGE 123

[Close]

BLAST of Cucsat.G6565.T3 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KK++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 51  KKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 110

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 111 PTITSREIQTAVRLVLPGE 129

[Close]

BLAST of Cucsat.G6565.T3 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-35
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KK++KKS+ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESSKLARYNKK
Sbjct: 42  KKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKK 101

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 102 PTITSREIQTAVRLVLPGE 120

[Close]

BLAST of Cucsat.G6565.T3 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-35
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKK
Sbjct: 54  KKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKK 113

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 114 PTITSREIQTAVRLVLPGE 132

[Close]

BLAST of Cucsat.G6565.T3 vs. TAIR 10
Match: AT5G22880.1 (histone B2 )

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KKR+KK++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKK
Sbjct: 48  KKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKK 107

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 108 PTITSREIQTAVRLVLPGE 126

[Close]

BLAST of Cucsat.G6565.T3 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 144.1 bits (362), Expect = 9.6e-35
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   KKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKK 60
           KK  KKS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKK
Sbjct: 53  KKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKK 112

Query: 61  PTITSREIQTAVRLVLPDE 80
           PTITSREIQTAVRLVLP E
Sbjct: 113 PTITSREIQTAVRLVLPGE 131

The following BLAST results are available for this feature:

BLAST of Cucsat.G6565.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49118	1.2e-34	96.20	Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3	[more]
Q9LQQ4	1.6e-34	94.94	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
Q1S9I9	1.6e-34	94.94	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SU99	2.7e-34	93.67	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	4.6e-34	93.67	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]

BLAST of Cucsat.G6565.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
RDX60372.1	5.09e-44	76.92	Histone H2B.4, partial [Mucuna pruriens]	[more]
KAF7152864.1	7.69e-44	65.35	hypothetical protein RHSIM_Rhsim01G0225200 [Rhododendron simsii]	[more]
XP_016903018.1	9.74e-44	98.73	PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo]	[more]
XP_004139453.1	9.74e-44	98.73	histone H2B.7 [Cucumis sativus] >KGN64858.1 hypothetical protein Csa_022751 [Cuc...	[more]
XP_022964661.1	9.74e-44	98.73	histone H2B.7-like [Cucurbita moschata] >XP_022970348.1 histone H2B.7-like [Cucu...	[more]

BLAST of Cucsat.G6565.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371E2V8	2.47e-44	76.92	Histone H2B (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_61489 PE=3 SV=1	[more]
A0A0A0LV55	4.71e-44	98.73	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1	[more]
A0A5A7SNI2	4.71e-44	98.73	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00170 PE...	[more]
A0A6J1I3M0	4.71e-44	98.73	Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111469340 PE=3 SV=1	[more]
A0A0A0LST8	4.71e-44	98.73	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1	[more]

BLAST of Cucsat.G6565.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07790.1	1.1e-35	94.94	Histone superfamily protein	[more]
AT2G37470.1	4.3e-35	92.41	Histone superfamily protein	[more]
AT2G28720.1	4.3e-35	94.94	Histone superfamily protein	[more]
AT5G22880.1	7.3e-35	93.67	histone B2	[more]
AT5G59910.1	9.6e-35	93.67	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 30..50 score: 75.74 coord: 69..82 score: 64.29 coord: 52..69 score: 76.51 coord: 11..29 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 1..95 e-value: 3.4E-48 score: 176.1
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..79
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..74 e-value: 1.6E-18 score: 67.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..88 e-value: 4.5E-43 score: 148.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 1..79
None	No IPR available	PANTHER	PTHR23428:SF176	HISTONE H2B.1	coord: 1..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G6565	Cucsat.G6565	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6565.T3.E1	Cucsat.G6565.T3.E1	exon
Cucsat.G6565.T3.E2	Cucsat.G6565.T3.E2	exon
Cucsat.G6565.T3.E3	Cucsat.G6565.T3.E3	exon
Cucsat.G6565.T3.E4	Cucsat.G6565.T3.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6565.T3.C3	Cucsat.G6565.T3.C3	CDS
Cucsat.G6565.T3.C2	Cucsat.G6565.T3.C2	CDS
Cucsat.G6565.T3.C1	Cucsat.G6565.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G6565.T3	Cucsat.G6565.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity