
Cucsat.G5938.T2 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTACCAAAGAAGACAATCATCCCAAAGGTGTAAAATGGGCCGATGGAACTTTGAACTTTTGAAACAATCAGTTGATGAACGAAAACTTGCCCTAGGGTTCCCAATTTTCCTTACCTGAACCCCTAAACCTTTCCCTCTCGGAGATTACACCATTTCGCTTCTCCCTTTACTTCGTGTAAGTTCCTCTTCCTTCTTCTTCTTCCATTTTAATCGCAAAATCGTCAGCCTCTCCCCATGGAGCAAAGGGGTTTTCGCCGTTTTCTTCTGAAACCATTGATTTTCTTTGCTCATCTTTTCGTGTTTCCGATGTTCGAAATTTTCGTCTTTCCTCTGTTTCCTTAAAACAACTCCATCCATCCAAGGAGGAAGCGTTATATATTGTTATTATTGTTATTATTATTTTTGTTTGTAGCTGTGTTTATACATGTACGCATACGTTTTTAACGTTTCTGTGTTGTGTTTTCGATTGCGAAAGTGCTAGGTTCTTCTCCGGGTGAGTATTGTTTAGGTAACCTACTCAATCCCTCCTCTTTTCTCTGTATGATAATTTTTTTCGGGAAATTTGTGTCAAAGGCAATCAAAATTTTGTGAGTTCGATACAAACATCTTGGCGTTTGTTGATTTCAAATATGTGCTTTCCTTCAAATGAGAGAGGAAGATACCTTCTCACTGAATGACCCTTTTCGAAGTTTAAGCACTGGGCTTGGAAAGAGTTTGGACTTCACAACTATGTAAGCGATGGCATGGTCGAAAATGTTCTATCAATTGAAACTGTTTGGGGAAGGAGAAGCATTGGAAATAAAATGAGTGAGGTTAGACTTGAACAACTAATGATTTAAGAAAACAAAGAGACCTTGACAATGAGGCTTGTGGCTGTGCTGTGGAGAAATTCTAGAACTGGGTGCTATTAATTTGGACAGTCTAAGAACTGTATGATTAGGTTCCAGAGGCATGCTGTATGTTCTTTTGGAATGGTGTTTCTCAAATAACGTTCACCCAATCAGTTTTTTTTTTTTTTTTCTTAAATGGTCATTTTACAAAGTTGATACTGAAGTAGCTGTATTGGTATTTACTGAAGAAATTTTTGGTGGTCCTTGGAGTAATTTGAAGTACCTTTTGGATCCAGACGCAATACAAAGAGAGGAATTTTGCTGCTAGGCCTTCCCCAATCAACTTATTTATATCTAGATAGCAAGATGCAAAGGAAGTTTTGAGAGCTTCCTACCTCCTATTTCTCAAAGAGAACTAGAATTTACAAAGTAAAAGATATTGTAGTACAACAACTAAAGAAACTTACATATACCCCTCCAAGACCACTCAGCGTAATGGTTTACAGGGGACCACAAACACTAGTAATAAACTCTCTTTCTTCCCTTCAGCTTACGTGCCTCCTATCCTTTCCTTCTTCTTGCTTAGACAGACTTTAGTGATTAGGGGATTATAATTACCCACGACCAAATGAGCCACCATGTTCTCAAGGTACAAATTTGGAAATTGGGCTTGAATGGTGGACACAATCTCCCATGCGGCATCTGCCTGAGTAGCTTAAGATCCCAACGAATAAACACCTCCAATTCTCCCCTCATAGAAGGAGAAACATAGGAAAATTCTAGCCCATCGCCTTTTGGAGAAGGCTCGCATGAAGCATGGGATGAATCTTTACCATGTCATCAGACCTAATTTAGTCATAATCTGAAAAAGGCCAATAAAACATGGAGCTAACTTGGGATGGTTGTGTTGAAAAATGAAGGTTGCTGTTACAACCTTAATTTAAAATAAACCTACTGATCGACCTCAACATGCAAATCCCGTTGTTTTTTATTGGTTATATCTGCCAATAATTGCTAAGTTTGCAGCAATGATGCCTTCCAAGTATTCAACGTCGCATCTCTGTCTCAGAGTTGAACATCAACCTCGGAAACTACATATAAATCAGCATGTAGGGAATGATAGGGGTGGCGGCCAACCACAAACTACTTCACAAGGGGTAGGTTGTCTTAGTAGATTATGTTAAGTGATGTTGTAGCTTAAGTCCACCCAAGGAATCCATTTGTGCTCCACTTTGACAGGGACAACGAATAACGAACCCTCTCTTCCCAAAGCTCACAAGCCACCTATCTTTCCCTTCATGCGTAGACCGTAGTACTTATCATTTCTCTTCTTGTTTTTTACTTTTCGTGATTTGTAGAAATTGATTACATTGTGCATCTTTAAGCCTTCTTTTGAAGGCCTCTTGAACGATTGCTTAGCTGTTCATTGTAGTTTTCTGTTACTAATTAAAAACCCAAATCCTCCCTTCACGCAGTTGGACAAAACTTAGGTGTCCATCTTGAGATGTTTTCTAGTGGAACATTCGTATTAGGTTTATATTAGTTCCCGTTGATCTTGTTTACCAAAATAGGCGGCTGAGTTCTCTTCATGAGGTGAACGAAGGATGGCCATTGATAATTTCTCATCATTCTTTTAGTCATATACTCATTCAATACTAAGGTCACATCCGGTTGTGACCATTGCCATAAGGCCTTGGACTATGAGATTAGGTTCCCATTTGTATTCTATGAACTGTTTTGGAATAAAAAAGAATAACATAGATGGTTGAGACCTTGGTGTTCATGTTAGAGGTATTTGTTATGCCAAGCAGAAATTTTTCCCAGAGAAAGTGCATTCTTACTATTAAGACAGCAAAGTTCAGTTAAATGAGGATTAGGGTTGACATATTTAATGGCCATTTGGTGATGGAACTTCCCTGTGTTGTTGTGGCGTGATATGGAACTTCTTTTAAGCCTAGTTGACCTAATTTGGCATGCATGGATTTTCAGAAGTGCCAGGATAACATAGAACTTCCAGAAGCTTTTACTACATTAGGTTCCCTATTCTGGTCTCCGAAGATAATACTTCATTACTTGACATTTGAGTTCAGCTTGGTTTACGTGAAAAATGTGCTTCCACCCTTAGGTAATTATTGCATCGTTTCTGCAGGACTTTTAGTATGGCAGGAAGAAATCGCTCATCACGCCACATTGATGGTTACAGAGTTTCTCGTGATGTCCCTAGATCCTACATAGAACGAGTGCCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAACTTGAATTGCAACGTAGGGAAATGCAGAGAATTATTTCAGATAACCGCATGGTGATTGATGATAATACAGTACTTCAGAGGGAATTATCAGCTGCAAAGGAAGAAATTCACAGATTGAACCAGGTTATTCCCAAAATCGTGTCTGAGAAAGAATCACAATCCAGGGAGTTGCTTGAAAGAGGTTTGAAGCTAGAAGCTGAGCTTCGTGCTTCTGAGCCTTTAAAGTCTGAGGTTCTGCAATTAAGAGCTGAGATTCAGAAATTGAATACATTGAGGCAGGATTTGTCTGCTCAAGTCCAAAGCCTCACCAAGGATGTTAATCGATTGCAAGCTGAAAATCAGCAGCTAAATTCTATGAGAGCTGATATGGATGGATTGCACAAGGAGCTTATTGAAGCCAGGTTTGAAATGGAAATTTTAATTGATTGGCGTTGGATCCTAGTCTATGTTTTCTTCTTTTTCTGGTTAGGATTTGGCACTAGGACAGGTCAAGATAAATTCAAAACCACATTAATTAGTCTATTCCATGATTGAATTGATCGTGCACAATGTTTTTAGGAGGGCTTATGAATATGAAAAGAAAGCCAATGAAGAACAAATTGAACAAAAGCAATCAATGGAGAAGAACCTTGTTTCAATGGCTCGTGAAATAGAGAAACTGCGAGCAGAGAAGCTCAACATAGAGAGAGCACGGGGATTAGGTTATTTCTTTCTCTAATTTTTCTATTCTTTTCCTTTAACAAAATTATTGTCAACATGTGGACGTCTGGTTTCTTGCAACAACGGTAGCTAGTTGGTTTTAAGCTTCTGTTATACCTTTTTAGGTGCTGAGAATTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAGTAGCTATGGTAGTTCTTGGGCACCATATGAGAAGCGTACCCGACGTTAAGTTTCAACCTTTCTCTTAGATGTCCTTCATTGAAGTTCAATATCTGGTTTAACATCTTTACTTTTTCTGGAGAAGCTGCTTTTGAGAATTACCATGATCATGGTGTGAAGTATCAACTATCAACTAGTTAAGATTTGTAACTGTAGTACATTTTACTCTATGTGACTAAAGTTCTGCTTTCATTGCATTATACAATGAGTTATTTTTATTCAAGTTTATTTAGTGGCTGCAGTAGCAGAAATATACAGAGTAGATTGTTGGCTGGGAAAAACAGTCATTGACGTTTTTCAACTAATCCTTAAAAAAAGAAAAAAAAAGGTTTATGATGGTTACTCTGCAGAATTAGTAGAATAAATGTTGATTGGGAAGTTTAATTCTCGTGACAATTATTGGGCTGAATATATTTTGGGGGACATTGTGATTCTCATTCCTATATTGAGTTTCTCCAAAACATACGCTTGTATTGAGGGATCCAGTTCCTTGGCTTATGGAGAAGCTTTATATTGTGTTGGTTTCGTGAGTTATTTGATTGGCTTAAGTATAACTAGTACTCTTTTGTAAGATAAATATTTTGAACTTTTGATCACATGCCCATGTAAGTGAGTTGCTTGACATTGGTAGGCAAGAGTTGCTTGATAGTATTGTCATGTATGAAGACGTTCAGTTGCTTAGTTGGAGACAGGAACCCTATATTGGTCACAAGAGTTTTGAGAAGAGGTCCTGTCATGTTGAATGGTAGATATAAAAAGGCTACTCAGATATCTTTCTATACATCCACAAGTACCCTACTCTAGTATTTTTGTTATGTTCGTTGGATATGAAAGAGTTTCTATGTTTCTAATCAGATCAGTATGTTAAATGTCCTCTGTCAATTTTGACTATTCTCACTTCATAACTAAAATTACATTTATACCTCAACCGATGAAACTACTTGAAGTAGAGGCCCTACAGCAGAAGACCTATTTAGAAGGTGCTCATGAGGGAGAGGTTTGTGATAATTTCTGAATCTCTGACCTGTCCGGTTAACTGGTGAGCTGCAGAAGATATTATAAAGCCTGCGACCAGGATGATTTCCCATGCATTTTTATTCACTTCTCATCCGGTAAGTAGAGTGATCATGATCAGTAAGGACAATATTAGAATGTAACTTTTGCACAAATAGCTGAGAGATGGGGGTGGTTGTCAGTTGTCTAATCTTCTGCAGTCGCATTAAAAAGAAAAAAAAAACCTGGTTATGCTTTTTTTTTCTTTTTCTTTTTCTTTTGCCAGTGTTGTGCAAGTTTGATAGGAAATTTACAGTTAGAAAATGGGTGACTGAAGATACCAACCATGTATGTGATGCATTATTCAGTTTTGAAGTTTGCAATTTTGGAAGAATATTGCCCAATGAAGTCGCAGATTGAGGAAACGCTGCGACTGAATTGAATGTTAAGCTAGCTGGAGTGTTTTGTTTATGCTTGTAATTTTCTGTTTTACATGATTCTCACTTTTCATCTATTTTGTTCAATCTTTAAATAAAGTCAACAAGCTTTCTACTCTTTGAAATATCTCTACATTATTGTTATGATTATTTCTTTAGATTGTTTGATTTTTAAGTGCTTAAGAATACTTTTGATCAC ATGGCAGGAAGAAATCGCTCATCACGCCACATTGATGGTTACAGAGTTTCTCGTGATGTCCCTAGATCCTACATAGAACGAGTGCCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAACTTGAATTGCAACGTAGGGAAATGCAGAGAATTATTTCAGATAACCGCATGGTGATTGATGATAATACAGTACTTCAGAGGGAATTATCAGCTGCAAAGGAAGAAATTCACAGATTGAACCAGGTTATTCCCAAAATCGTGTCTGAGAAAGAATCACAATCCAGGGAGTTGCTTGAAAGAGGTTTGAAGCTAGAAGCTGAGCTTCGTGCTTCTGAGCCTTTAAAGTCTGAGGTTCTGCAATTAAGAGCTGAGATTCAGAAATTGAATACATTGAGGCAGGATTTGTCTGCTCAAGTCCAAAGCCTCACCAAGGATGTTAATCGATTGCAAGCTGAAAATCAGCAGCTAAATTCTATGAGAGCTGATATGGATGGATTGCACAAGGAGCTTATTGAAGCCAGGAGGGCTTATGAATATGAAAAGAAAGCCAATGAAGAACAAATTGAACAAAAGCAATCAATGGAGAAGAACCTTGTTTCAATGGCTCGTGAAATAGAGAAACTGCGAGCAGAGAAGCTCAACATAGAGAGAGCACGGGGATTAGGTGCTGAGAATTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAGTAGCTATGGTAGTTCTTGGGCACCATATGAGAAGCGTACCCGACGTTAA MAGRNRSSRHIDGYRVSRDVPRSYIERVPAPLPIHPAALEEELELQRREMQRIISDNRMVIDDNTVLQRELSAAKEEIHRLNQVIPKIVSEKESQSRELLERGLKLEAELRASEPLKSEVLQLRAEIQKLNTLRQDLSAQVQSLTKDVNRLQAENQQLNSMRADMDGLHKELIEARRAYEYEKKANEEQIEQKQSMEKNLVSMAREIEKLRAEKLNIERARGLGAENYGILNRSPEMRYAGGAYGSSYGSSWAPYEKRTRR Homology
BLAST of Cucsat.G5938.T2 vs. ExPASy Swiss-Prot
Match: Q9C717 (Protein FLX-like 3 OS=Arabidopsis thaliana OX=3702 GN=FLXL3 PE=1 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 3.5e-42 Identity = 116/261 (44.44%), Postives = 167/261 (63.98%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy Swiss-Prot
Match: Q93V84 (Protein FLX-like 1 OS=Arabidopsis thaliana OX=3702 GN=FLXL1 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 3.0e-25 Identity = 77/224 (34.38%), Postives = 132/224 (58.93%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy Swiss-Prot
Match: Q84TD8 (Protein FLX-like 2 OS=Arabidopsis thaliana OX=3702 GN=FLXL2 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 6.3e-23 Identity = 70/212 (33.02%), Postives = 127/212 (59.91%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy Swiss-Prot
Match: F4IMQ0 (Protein FLC EXPRESSOR OS=Arabidopsis thaliana OX=3702 GN=FLX PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 6.3e-15 Identity = 62/222 (27.93%), Postives = 124/222 (55.86%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. NCBI nr
Match: XP_011656524.1 (protein FLX-like 3 [Cucumis sativus] >XP_031743135.1 protein FLX-like 3 [Cucumis sativus] >KGN45961.1 hypothetical protein Csa_005285 [Cucumis sativus]) HSP 1 Score: 481 bits (1239), Expect = 9.48e-171 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. NCBI nr
Match: XP_008445665.1 (PREDICTED: protein FLX-like 3 [Cucumis melo] >KAA0063899.1 protein FLX-like 3 [Cucumis melo var. makuwa] >TYK15906.1 protein FLX-like 3 [Cucumis melo var. makuwa]) HSP 1 Score: 476 bits (1226), Expect = 9.08e-169 Identity = 258/261 (98.85%), Postives = 260/261 (99.62%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. NCBI nr
Match: XP_038884141.1 (protein FLX-like 3 [Benincasa hispida]) HSP 1 Score: 466 bits (1200), Expect = 8.33e-165 Identity = 251/261 (96.17%), Postives = 257/261 (98.47%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. NCBI nr
Match: XP_022158741.1 (protein FLX-like 3 [Momordica charantia]) HSP 1 Score: 459 bits (1181), Expect = 6.55e-162 Identity = 247/261 (94.64%), Postives = 254/261 (97.32%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. NCBI nr
Match: XP_022960852.1 (protein FLX-like 3 [Cucurbita moschata] >XP_022960860.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960869.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960879.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960887.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960895.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960901.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960907.1 protein FLX-like 3 [Cucurbita moschata] >KAG7032502.1 Protein FLX-like 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 451 bits (1161), Expect = 7.30e-159 Identity = 241/261 (92.34%), Postives = 254/261 (97.32%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy TrEMBL
Match: A0A0A0KDW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039520 PE=3 SV=1) HSP 1 Score: 481 bits (1239), Expect = 4.59e-171 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy TrEMBL
Match: A0A5A7VEE6 (Protein FLX-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00050 PE=3 SV=1) HSP 1 Score: 476 bits (1226), Expect = 4.40e-169 Identity = 258/261 (98.85%), Postives = 260/261 (99.62%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy TrEMBL
Match: A0A1S3BCS2 (protein FLX-like 3 OS=Cucumis melo OX=3656 GN=LOC103488624 PE=3 SV=1) HSP 1 Score: 476 bits (1226), Expect = 4.40e-169 Identity = 258/261 (98.85%), Postives = 260/261 (99.62%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy TrEMBL
Match: A0A6J1E1V0 (protein FLX-like 3 OS=Momordica charantia OX=3673 GN=LOC111025204 PE=3 SV=1) HSP 1 Score: 459 bits (1181), Expect = 3.17e-162 Identity = 247/261 (94.64%), Postives = 254/261 (97.32%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. ExPASy TrEMBL
Match: A0A6J1H8N2 (protein FLX-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111461532 PE=3 SV=1) HSP 1 Score: 451 bits (1161), Expect = 3.54e-159 Identity = 241/261 (92.34%), Postives = 254/261 (97.32%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. TAIR 10
Match: AT1G55170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). ) HSP 1 Score: 173.3 bits (438), Expect = 2.5e-43 Identity = 116/261 (44.44%), Postives = 167/261 (63.98%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. TAIR 10
Match: AT3G14750.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). ) HSP 1 Score: 117.1 bits (292), Expect = 2.1e-26 Identity = 77/224 (34.38%), Postives = 132/224 (58.93%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. TAIR 10
Match: AT1G67170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). ) HSP 1 Score: 109.4 bits (272), Expect = 4.5e-24 Identity = 70/212 (33.02%), Postives = 127/212 (59.91%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. TAIR 10
Match: AT2G30120.2 (unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 2527 Blast hits to 2101 proteins in 358 species: Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215; Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source: NCBI BLink). ) HSP 1 Score: 82.8 bits (203), Expect = 4.5e-16 Identity = 62/222 (27.93%), Postives = 124/222 (55.86%), Query Frame = 0
BLAST of Cucsat.G5938.T2 vs. TAIR 10
Match: AT2G30120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 275 Blast hits to 241 proteins in 42 species: Archae - 4; Bacteria - 15; Metazoa - 15; Fungi - 4; Plants - 188; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). ) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10 Identity = 37/138 (26.81%), Postives = 86/138 (62.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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