Cucsat.G5769.T5 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G5769.T5
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	HTH myb-type domain-containing protein
Location	ctg1402: 2555749 .. 2557134 (+)
RNA-Seq Expression	Cucsat.G5769.T5
Synteny	Cucsat.G5769.T5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGATTATTATTCTGTGAATTGAAATGAAATGCAGTGGCGACGCCGAAGCAAATAAGAGAATTGATGAAGGTGGATGGTCTCACCAACGATGAAGTGAAAAGTCATCTGCAGGTTTGTTCTTCTTCCTTTTTGTTTCAAATTAAGTTATACTGTTTTTTTAAAAGGAAATTGTCTCTTAAAAATGAAATATATATATGATTCAAATAAATTTTCAGTAATCAACGATTTTAATGGGAATTCTTCTCTAAATTACTTTAGATAGAAGATCAAATTATTATAAAAAGTGTAAAATAAGATAAAAATAAATAGAATGCTTGGAATGAGTTTTAATTTTAACTTATCATTTATTAAACCAAAAGAAAAATGTCAGTAAAGTATGTTCATGACAGCTAATAAATATTCAACTTTTATTCTATTTATTAGAGGAATTTGAAATCTCTGCTTTTTTATTTTATTATTCGGCTTCCTCTTAACTTTTTCTTCAATCCTAAGTTTTTTTTTTTTTCTCCCTTTTATCAATTAAAGAATGTGATGCCAAATTTATATTTATAAAAATAATGGGAATAATAATAAAGAATCAGGAAGGTTTTAAAATACAAGTGAACTTATTCATAAACCTAACATTTCATATTTGGTCTCTTATCATTAACTCCATATTTTTGTTCAATAAGCCTATGCCCTAATAGTTTTATCAATTTGAAGTTTGTCGTCATTTGGCATTTTTACTTCAAAATAAAATTGAAAATTTAGAGTTTTGTTCAACATGTTTGCTAACTAAGACACAAAAGTTATTTTTCTTTTCTATATTCAAGAATTATTTTGTGAAAATATATTTCTTATAAATAAGAAAGAATATTGTAAAAGATTATTGGGATGATTCATTCTGTAAAACATTATTTTTGTTCAGAAGTATCGTCTGCACACGAGACGACCAACTCCGACGATCCACAACAACGAGGGCGGCCATGCACCGCAGTTCCTAGTTGTTGGCGGCATATGGGTACCTGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTGGTCAGTGCCGCTACCACCAACGGAATTTATGCACCGGTTGTGGCAGCTGCAGCGCCGCAGCCATTAGTTAGTACAGTTCAAAAGCCCAAGCCCAAGCCCAAGCCCAAGATTATTCCTTCCTCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGAGCCTCTAAGTTTAGTTGGAATTTTTGTTTCTTTTGGTATACATTGTGATGTGTGAATGTTGTAAAAGTTTTGCTACAGAACATGCATAGAAATAACTAATAAGATGTAGAACATGCTGAGTTAGTTCATTAAACT

Coding sequence (CDS)

ATGAAGGTGGATGGTCTCACCAACGATGAAGTGAAAAGTCATCTGCAGTATCGTCTGCACACGAGACGACCAACTCCGACGATCCACAACAACGAGGGCGGCCATGCACCGCAGTTCCTAGTTGTTGGCGGCATATGGGTACCTGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTGGTCAGTGCCGCTACCACCAACGGAATTTATGCACCGGTTGTGGCAGCTGCAGCGCCGCAGCCATTAGTTAGTACAGTTCAAAAGCCCAAGCCCAAGCCCAAGCCCAAGATTATTCCTTCCTCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA

Protein sequence

MKVDGLTNDEVKSHLQYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHTSSVSPASS

Homology

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot
Match: Q9FX67 (Transcription factor HRS1 OS=Arabidopsis thaliana OX=3702 GN=HRS1 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-15
Identity = 57/127 (44.88%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRP  T+ NN       F+VVGG+WVP ++Y +   TT
Sbjct: 216 MKVDGLTNDEVKSHLQKYRLHTRRPRQTVPNNGNSQTQHFVVVGGLWVPQSDY-STGKTT 275

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPK---PKPKPKIIPSSAVECNSPTTSS 120
                 S  TT GIY  + A   PQ    +  +P     +          V C+SP  SS
Sbjct: 276 GGATTSSTTTTTGIYGTMAAPPPPQWPSHSNYRPSIIVDEGSGSHSEGVVVRCSSPAMSS 335

Query: 121 STHTSSV 124
           ST    V
Sbjct: 336 STRNHYV 341

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot
Match: Q9LS00 (Transcription factor HHO1 OS=Arabidopsis thaliana OX=3702 GN=HHO1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-14
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLH RRP+ T  NN       F+VVGGIWVP   +    +T 
Sbjct: 231 MKVDGLTNDEVKSHLQKYRLHARRPSQTTPNNRNSQTQHFVVVGGIWVPQTNH----STA 290

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQ-PLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSST 120
           ++   V++  T GIY P+V++   + P  S   +   + + +   +    C+SP  S ST
Sbjct: 291 NAVNAVASGETTGIYGPMVSSLPSEWPRHSNFGRKISEDRSRCSNNGFFRCSSPAMSCST 350

Query: 121 HTSS 123
            T +
Sbjct: 351 RTKT 350

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot
Match: Q8VZS3 (Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.9e-14
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPT---IHNNEGGHAPQFLVVGGIWVPAA-EYAAV 60
           MKVDGLTNDEVKSHLQ YRLHTRRP  T     +      PQF+VVGGIWVP++ ++   
Sbjct: 250 MKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWVPSSQDFPPP 309

Query: 61  STTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTS 120
           S   + G         G+YAPV  A +P+                   S    CNSP  S
Sbjct: 310 SDVANKG---------GVYAPVAVAQSPK------------------RSLERSCNSPAAS 354

Query: 121 SSTHTSSVSPAS 128
           SST+T++ +P S
Sbjct: 370 SSTNTNTSTPVS 354

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot
Match: Q6Z869 (Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGG-----HAPQFLVVGGIWVPAAEYAA 60
           MKVDGLTNDEVKSHLQ YRLHTRRP+ T  ++         APQF+VVG IWVP  EYAA
Sbjct: 270 MKVDGLTNDEVKSHLQKYRLHTRRPSSTGQSSAAAGVPAPPAPQFVVVGSIWVPPPEYAA 329

Query: 61  VSTTTSSGEVVSA-----ATTNGIYAPV-VAAAAPQPLVSTVQKPKPKPKPKIIPSSA-- 120
            +      ++ +A      + N +YAPV +  A  QP     Q  + +   +   S    
Sbjct: 330 AAAAQQHVQLAAAGNNASGSANPVYAPVAMLPAGLQPHSHRKQHQQQQQGQRHSGSEGRR 389

Query: 121 ------VECNSPTTSSSTHTSS 123
                    +SP  SSS+ T+S
Sbjct: 390 SGDAGDGSSSSPAVSSSSQTTS 411

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot
Match: Q9FPE8 (Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 59/133 (44.36%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRP-TPTIHNNEGGHAP---QFLVVGGIWVPAAEYAAV 60
           MKVDGLTNDEVKSHLQ YRLHTRRP TP +    GG  P   QF+V+ GIWVP+ +    
Sbjct: 244 MKVDGLTNDEVKSHLQKYRLHTRRPATPVVRT--GGENPQQRQFMVMEGIWVPSHD---- 303

Query: 61  STTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTS 120
                        T N +YAPV    A QP  S+    +          S   C SP TS
Sbjct: 304 ------------TTNNRVYAPV----ATQPPQSSTSGER----------SNRGCKSPATS 344

Query: 121 S-STHTSSVSPAS 128
           S +THT  + P S
Sbjct: 364 STTTHTPHLLPLS 344

[Close]

BLAST of Cucsat.G5769.T5 vs. NCBI nr
Match: XP_031742472.1 (transcription factor HHO3 isoform X2 [Cucumis sativus])

HSP 1 Score: 240 bits (612), Expect = 3.53e-76
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTS 60
           MKVDGLTNDEVKSHLQYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTS
Sbjct: 243 MKVDGLTNDEVKSHLQYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTTS 302

Query: 61  SGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHT 120
           SGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHT
Sbjct: 303 SGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTHT 362

Query: 121 SSVSPASS 128
           SSVSPASS
Sbjct: 363 SSVSPASS 370

[Close]

BLAST of Cucsat.G5769.T5 vs. NCBI nr
Match: XP_011656513.1 (transcription factor HHO3 isoform X1 [Cucumis sativus] >KGN45944.1 hypothetical protein Csa_005184 [Cucumis sativus])

HSP 1 Score: 235 bits (600), Expect = 2.36e-74
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT
Sbjct: 243 MKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 302

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH 120
           SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH
Sbjct: 303 SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH 362

Query: 121 TSSVSPASS 128
           TSSVSPASS
Sbjct: 363 TSSVSPASS 371

[Close]

BLAST of Cucsat.G5769.T5 vs. NCBI nr
Match: XP_008445641.1 (PREDICTED: probable transcription factor GLK2 [Cucumis melo] >KAA0049638.1 putative transcription factor GLK2 [Cucumis melo var. makuwa] >TYK08896.1 putative transcription factor GLK2 [Cucumis melo var. makuwa])

HSP 1 Score: 215 bits (548), Expect = 1.74e-66
Identity = 123/133 (92.48%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRPTPTIHNNE GH PQFLVVGGIWVPAAEYAAVSTTT
Sbjct: 243 MKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHTPQFLVVGGIWVPAAEYAAVSTTT 302

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSA----VECNSPTTS 120
           SSGEVVSAATTNGIYAPVVAAAAPQPL STVQKPK  PKPKIIPSSA    VECNSPTTS
Sbjct: 303 SSGEVVSAATTNGIYAPVVAAAAPQPLASTVQKPK--PKPKIIPSSAAVAAVECNSPTTS 362

Query: 121 SSTHTSSVSPASS 128
           SSTHTSSVSPASS
Sbjct: 363 SSTHTSSVSPASS 373

[Close]

BLAST of Cucsat.G5769.T5 vs. NCBI nr
Match: XP_038885697.1 (transcription factor HHO3-like [Benincasa hispida])

HSP 1 Score: 197 bits (500), Expect = 2.48e-59
Identity = 110/129 (85.27%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRP+PTIHNNE GHAPQFLVVGGIWVPAAEYAA S TT
Sbjct: 239 MKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAASATT 298

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH 120
           SSGE VSAA TNGIYAPVVAAAAPQPL S VQKPKPK       + A ECNSPTTSSSTH
Sbjct: 299 SSGEAVSAAATNGIYAPVVAAAAPQPLPSIVQKPKPKIPSSATAAVAAECNSPTTSSSTH 358

Query: 121 TSSVSPASS 128
           TSSVSPASS
Sbjct: 359 TSSVSPASS 367

[Close]

BLAST of Cucsat.G5769.T5 vs. NCBI nr
Match: XP_022139423.1 (transcription factor HHO3-like [Momordica charantia])

HSP 1 Score: 174 bits (442), Expect = 1.82e-50
Identity = 104/134 (77.61%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRP+PTIHN+E   APQFLVVGGIWVPAAEYAAV+TTT
Sbjct: 247 MKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNSESAQAPQFLVVGGIWVPAAEYAAVATTT 306

Query: 61  SSGEVVS-AATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAV-----ECNSPT 120
           SSGE VS AAT+NGIYAPVVAAA PQPL +TVQ+PK K      PS+AV     +CNSP 
Sbjct: 307 SSGEAVSVAATSNGIYAPVVAAAPPQPLANTVQRPKAKLCCGQSPSAAVAAAAAQCNSPA 366

Query: 121 TSSSTHTSSVSPAS 127
           TSSSTHTSS SPAS
Sbjct: 367 TSSSTHTSSPSPAS 380

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL
Match: A0A0A0KAT4 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G031440 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.14e-74
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT
Sbjct: 243 MKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 302

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH 120
           SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH
Sbjct: 303 SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSSTH 362

Query: 121 TSSVSPASS 128
           TSSVSPASS
Sbjct: 363 TSSVSPASS 371

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL
Match: A0A5D3CEV4 (Putative transcription factor GLK2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00020 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 8.43e-67
Identity = 123/133 (92.48%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRPTPTIHNNE GH PQFLVVGGIWVPAAEYAAVSTTT
Sbjct: 243 MKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHTPQFLVVGGIWVPAAEYAAVSTTT 302

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSA----VECNSPTTS 120
           SSGEVVSAATTNGIYAPVVAAAAPQPL STVQKPK  PKPKIIPSSA    VECNSPTTS
Sbjct: 303 SSGEVVSAATTNGIYAPVVAAAAPQPLASTVQKPK--PKPKIIPSSAAVAAVECNSPTTS 362

Query: 121 SSTHTSSVSPASS 128
           SSTHTSSVSPASS
Sbjct: 363 SSTHTSSVSPASS 373

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL
Match: A0A1S3BDW6 (probable transcription factor GLK2 OS=Cucumis melo OX=3656 GN=LOC103488601 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 8.43e-67
Identity = 123/133 (92.48%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRPTPTIHNNE GH PQFLVVGGIWVPAAEYAAVSTTT
Sbjct: 243 MKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHTPQFLVVGGIWVPAAEYAAVSTTT 302

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSA----VECNSPTTS 120
           SSGEVVSAATTNGIYAPVVAAAAPQPL STVQKPK  PKPKIIPSSA    VECNSPTTS
Sbjct: 303 SSGEVVSAATTNGIYAPVVAAAAPQPLASTVQKPK--PKPKIIPSSAAVAAVECNSPTTS 362

Query: 121 SSTHTSSVSPASS 128
           SSTHTSSVSPASS
Sbjct: 363 SSTHTSSVSPASS 373

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL
Match: A0A6J1CFK1 (transcription factor HHO3-like OS=Momordica charantia OX=3673 GN=LOC111010360 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 8.80e-51
Identity = 104/134 (77.61%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRP+PTIHN+E   APQFLVVGGIWVPAAEYAAV+TTT
Sbjct: 247 MKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNSESAQAPQFLVVGGIWVPAAEYAAVATTT 306

Query: 61  SSGEVVS-AATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAV-----ECNSPT 120
           SSGE VS AAT+NGIYAPVVAAA PQPL +TVQ+PK K      PS+AV     +CNSP 
Sbjct: 307 SSGEAVSVAATSNGIYAPVVAAAPPQPLANTVQRPKAKLCCGQSPSAAVAAAAAQCNSPA 366

Query: 121 TSSSTHTSSVSPAS 127
           TSSSTHTSS SPAS
Sbjct: 367 TSSSTHTSSPSPAS 380

[Close]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL
Match: A0A6J1FK32 (transcription factor HHO3-like OS=Cucurbita moschata OX=3662 GN=LOC111444749 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.38e-44
Identity = 100/134 (74.63%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTN EVKSHLQ YRLHT+ PTPTIHNNE    PQFLVVGGIWVPA++YA    TT
Sbjct: 236 MKVDGLTNGEVKSHLQKYRLHTKCPTPTIHNNETVQPPQFLVVGGIWVPASDYA----TT 295

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSS------AVECNSPT 120
           SS E VSAAT NGIYAPVVAAAAPQPL STVQKP P+P   +IPSS      A ECNS T
Sbjct: 296 SSREAVSAATANGIYAPVVAAAAPQPLPSTVQKPNPRP---MIPSSSAAATAAAECNSST 355

Query: 121 TSSSTHTSSVSPAS 127
           TSSST TS VSPAS
Sbjct: 356 TSSSTRTS-VSPAS 361

[Close]

BLAST of Cucsat.G5769.T5 vs. TAIR 10
Match: AT1G13300.1 (myb-like transcription factor family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-16
Identity = 57/127 (44.88%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLHTRRP  T+ NN       F+VVGG+WVP ++Y +   TT
Sbjct: 216 MKVDGLTNDEVKSHLQKYRLHTRRPRQTVPNNGNSQTQHFVVVGGLWVPQSDY-STGKTT 275

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPK---PKPKPKIIPSSAVECNSPTTSS 120
                 S  TT GIY  + A   PQ    +  +P     +          V C+SP  SS
Sbjct: 276 GGATTSSTTTTTGIYGTMAAPPPPQWPSHSNYRPSIIVDEGSGSHSEGVVVRCSSPAMSS 335

Query: 121 STHTSSV 124
           ST    V
Sbjct: 336 STRNHYV 341

[Close]

BLAST of Cucsat.G5769.T5 vs. TAIR 10
Match: AT3G25790.1 (myb-like transcription factor family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAVSTTT 60
           MKVDGLTNDEVKSHLQ YRLH RRP+ T  NN       F+VVGGIWVP   +    +T 
Sbjct: 231 MKVDGLTNDEVKSHLQKYRLHARRPSQTTPNNRNSQTQHFVVVGGIWVPQTNH----STA 290

Query: 61  SSGEVVSAATTNGIYAPVVAAAAPQ-PLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSST 120
           ++   V++  T GIY P+V++   + P  S   +   + + +   +    C+SP  S ST
Sbjct: 291 NAVNAVASGETTGIYGPMVSSLPSEWPRHSNFGRKISEDRSRCSNNGFFRCSSPAMSCST 350

Query: 121 HTSS 123
            T +
Sbjct: 351 RTKT 350

[Close]

BLAST of Cucsat.G5769.T5 vs. TAIR 10
Match: AT1G68670.1 (myb-like transcription factor family protein )

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-15
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPT---IHNNEGGHAPQFLVVGGIWVPAA-EYAAV 60
           MKVDGLTNDEVKSHLQ YRLHTRRP  T     +      PQF+VVGGIWVP++ ++   
Sbjct: 250 MKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWVPSSQDFPPP 309

Query: 61  STTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTS 120
           S   + G         G+YAPV  A +P+                   S    CNSP  S
Sbjct: 310 SDVANKG---------GVYAPVAVAQSPK------------------RSLERSCNSPAAS 354

Query: 121 SSTHTSSVSPAS 128
           SST+T++ +P S
Sbjct: 370 SSTNTNTSTPVS 354

[Close]

BLAST of Cucsat.G5769.T5 vs. TAIR 10
Match: AT1G25550.1 (myb-like transcription factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 59/133 (44.36%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRP-TPTIHNNEGGHAP---QFLVVGGIWVPAAEYAAV 60
           MKVDGLTNDEVKSHLQ YRLHTRRP TP +    GG  P   QF+V+ GIWVP+ +    
Sbjct: 244 MKVDGLTNDEVKSHLQKYRLHTRRPATPVVRT--GGENPQQRQFMVMEGIWVPSHD---- 303

Query: 61  STTTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTS 120
                        T N +YAPV    A QP  S+    +          S   C SP TS
Sbjct: 304 ------------TTNNRVYAPV----ATQPPQSSTSGER----------SNRGCKSPATS 344

Query: 121 S-STHTSSVSPAS 128
           S +THT  + P S
Sbjct: 364 STTTHTPHLLPLS 344

[Close]

BLAST of Cucsat.G5769.T5 vs. TAIR 10
Match: AT2G03500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-10
Identity = 52/128 (40.62%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   MKVDGLTNDEVKSHLQ-YRLHTRRPTPTIHNNEGGHAPQFLVVGGIWVPAAEYAAV--ST 60
           MKVDGLTNDEVKSHLQ YRLHTRRP+P+     GG  P  +V+GGIWVP  EY +    T
Sbjct: 268 MKVDGLTNDEVKSHLQKYRLHTRRPSPS-PQTSGGPGPHLVVLGGIWVP-PEYTSAHGGT 327

Query: 61  TTSSGEVVSAATTNGIYAPVVAAAAPQPLVSTVQKPKPKPKPKIIPSSAVECNSPTTSSS 120
            T     V    TN    P     + Q   +T   P+P         +     + +T S+
Sbjct: 328 PTLYHHQVHHHHTNTAGPPPPHFCSSQEFYTTPPPPQPLHHHHFQTFNGSSGGTASTDST 387

Query: 121 THTSSVSP 126
            H  + SP
Sbjct: 388 HHQVTDSP 393

The following BLAST results are available for this feature:

BLAST of Cucsat.G5769.T5 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX67	2.4e-15	44.88	Transcription factor HRS1 OS=Arabidopsis thaliana OX=3702 GN=HRS1 PE=2 SV=1	[more]
Q9LS00	2.6e-14	41.94	Transcription factor HHO1 OS=Arabidopsis thaliana OX=3702 GN=HHO1 PE=1 SV=1	[more]
Q8VZS3	9.9e-14	43.18	Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1	[more]
Q6Z869	1.0e-10	40.85	Transcription factor NIGT1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIGT1 PE=...	[more]
Q9FPE8	2.3e-10	44.36	Transcription factor HHO3 OS=Arabidopsis thaliana OX=3702 GN=HHO3 PE=1 SV=1	[more]

BLAST of Cucsat.G5769.T5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742472.1	3.53e-76	100.00	transcription factor HHO3 isoform X2 [Cucumis sativus]	[more]
XP_011656513.1	2.36e-74	99.22	transcription factor HHO3 isoform X1 [Cucumis sativus] >KGN45944.1 hypothetical ...	[more]
XP_008445641.1	1.74e-66	92.48	PREDICTED: probable transcription factor GLK2 [Cucumis melo] >KAA0049638.1 putat...	[more]
XP_038885697.1	2.48e-59	85.27	transcription factor HHO3-like [Benincasa hispida]	[more]
XP_022139423.1	1.82e-50	77.61	transcription factor HHO3-like [Momordica charantia]	[more]

BLAST of Cucsat.G5769.T5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAT4	1.14e-74	99.22	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G03144...	[more]
A0A5D3CEV4	8.43e-67	92.48	Putative transcription factor GLK2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BDW6	8.43e-67	92.48	probable transcription factor GLK2 OS=Cucumis melo OX=3656 GN=LOC103488601 PE=4 ...	[more]
A0A6J1CFK1	8.80e-51	77.61	transcription factor HHO3-like OS=Momordica charantia OX=3673 GN=LOC111010360 PE...	[more]
A0A6J1FK32	1.38e-44	74.63	transcription factor HHO3-like OS=Cucurbita moschata OX=3662 GN=LOC111444749 PE=...	[more]

BLAST of Cucsat.G5769.T5 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13300.1	1.7e-16	44.88	myb-like transcription factor family protein	[more]
AT3G25790.1	1.9e-15	41.94	myb-like transcription factor family protein	[more]
AT1G68670.1	7.1e-15	43.18	myb-like transcription factor family protein	[more]
AT1G25550.1	1.6e-11	44.36	myb-like transcription factor family protein	[more]
AT2G03500.1	8.9e-10	40.63	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 1..23 e-value: 1.3E-5 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..128
None	No IPR available	PANTHER	PTHR31003:SF16	TRANSCRIPTION FACTOR HHO2	coord: 1..122
IPR044787	Myb family transcription factor HRS1-like	PANTHER	PTHR31003	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G5769	Cucsat.G5769	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5769.T5.E1	Cucsat.G5769.T5.E1	exon
Cucsat.G5769.T5.E2	Cucsat.G5769.T5.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5769.T5.C1	Cucsat.G5769.T5.C1	CDS
Cucsat.G5769.T5.C2	Cucsat.G5769.T5.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5769.T5	Cucsat.G5769.T5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding