Cucsat.G4440.T31 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G4440.T31
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg1173: 1485943 .. 1488951 (+)
RNA-Seq Expression	Cucsat.G4440.T31
Synteny	Cucsat.G4440.T31

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATATAGCAGTGGAAGCTTTTTTCTGGACCAAGCCCTTTGTTGAACTAATGGTGAATATTATTTTGGATCGCCTGTGAGAGTGATTTGTAAATTTTAAGATAATTGGCCATTGCTTTGTCTTATGGTAAATAGAGAGTATGGCATTGCTTTGTCTCATAATTTTATTGAATTGTGTTTTCTAACTTCGTTCTTTTAACTTTATAATTTTCAATGCAATGTTGATAATTTGTGATTTCAGAGAAGGCTTGATGACATACACACCATTTATTGCAAGAACTTGAAGAAGATGAGATATTGGTTGTTGAAGTTGAGAGCATGTATGTTGATCTTTTTAGTTATGTGGAACTTCATTTTTTATTTTAGATATCAAGAATACAAGTCAAAGTATATTACAACACATAAACAAGCCTTTTTCTCACAAGGATGAAGAATGGTACTTCTTGTCTTTTTACTTCCAGATTTTCTTTCCTTTTGTTATTCCCCTAATTCAATCTCTTTTGCCTAATTAGGTTGGGAGACAAATATGATCCAACCAAGGGTTGCACAGTTATAGTTGTTTGATTTTGTAGGAATGTAATTTCTGGATGTAATTTCATACTTAGAACGGATTGATTCTTACAGTTTAGTATTTTTTTTTCTCCATATTTATGTTATGAAATTTATTGGTTGTGGTATAGAGAGTTAAGTAGTAGTTCCCCAATATTTTGGGTTTCTACTTTGAGTTGGCTAGTTTATGGTCCTAGATCCTAGTAAAAATTTTATCTTTCTTTTGCCTTTATAAAAACATGTTTATATTTGTATAGATACTACTTTATTTTGTAATTTGGGATTGATATAGAGTATAGTTAGATTTTGGTTTGTTAAGGGAGGAAGAAAATAAAGAATTAAAAGCTTGGAACTTCATGCATCTTTTTCTCTCACTCTTTTCTTGGTGAATGTATTCAAGTCTTGAAGATTATGTAGCAGAGTACTACCAGCAGCAGGTAGAAAGGCTTGTTCCGTACTTGTATGTTTTTTTTTATGATTAAGACATTCTTCACTGCTCAAACCCAAAATTTGTTTTCTTCTCTATCACTAAAAGCAATTTTGTTTTCGGTCTAAAGCGAAATATGTTTTCTTTTTTGCTTAGCAATATTAATTCTATGTAAGTTGAGAATACATATTTTGATCTTGATTTCTGTTATACTGTGAAAAAGTTTCTATAATGCTTGTTGATTTCTTCAATTTGATCTGAGTAACTTTATTTTTTTAAGAACAAACGATCAGAGTTCACCACATGGTTGGTTGAAATAAAAAAGGTAAATTAACATTGGTAAATGTGTGAAATAGTTTTATGCAATGCTTGAATTTCCTTCATTTTTAACACATTTCATGCTTTCATTACGATGGAGCCTAGGAATGGAAGAAGAAAAAGAGACTTCAAGTTTCTATTTTGTTTCTATTTCAAGGATATGATTCCTAGACTTAAAAGTTAAAGTTCTAAGTTTTAATGTTATTCTCATTTTGTTTGTAGATTTTAAAGAGTTGAAGATAACAATCGATGAGACATTGAGCTTTGAGTTATGTGAGAGTTCTTTTTTAACTGAGGTAACTCTCTCTCCCTTGTTTCTTAATTCTCTTCCTTTGCTTTCCAAATTGCCTCCTAGGCCATCTTGCCATTGTGAAATACTATTGGAATGTGAGTTTATTGGAAGTTTAATAGGTAACTGCTTAGATTCTTCTGCTAAAGTTCAAAATGTCCACACCTCCCAAGGAATAACTCACGGTAACACTCTTATCTCCATTTCTATATATGAATCTTTGACCCTTTTCTTTTCTTCTCTTATCATTTATGTTTTTCCTCTCTTTTGGCCTTATGGTTTCTGGGTTTTCCTTGGATTTTTCATTACTTTGATCTTCTGCTTGGTTTGGTTATTTGGAATTGTTGGTTGATCCTACTGTTTTCTGTTGTTTTCTCCTTCCCCTCTTTTCTTTCTGGTTTTAGCAAATTTGAACTCAGGCTGCTAGTTTTTATGATGTGTATCGGTTGAAGTTTCAAGTTGTTTATTCTGTTTGGAAATAAAAAAAAGATCTAGAGAGACAAATGTAGTTTATTAAAGTCAATAGAGTTAATTATTTTAAACTAGTACATGTTTGAATTCAATATTATTACATGCTTCTTGTTTTTTCTAGTTTTAAGTAGCATTTGAGATTTTGTCAATGTTTGGGTATAATAATCTAGTTTTTAATGAGATTTTGTGAATGAAAGATTCTGAGTACCCTTTCATTTTTTGGACTTCCCCATTGTAGTTCTCACTCACCTTAGTTTCTCCGTTCCCACCATTTAATAATCTGTTTAACTCTAAGGATTACAAATTGTCGTACATGTATTGTCGTAGGCTGTTTTGTTCTAAGGACTAGGAACAACCCAAGAAGTTGTTCAATTTGCAGTGGCCATTTGGTTGGACGTTCTTCTTCTCCTTGATCTCTTTCTCCTCTTCTTAGGAACTTCATTTTCATTATCAGATTTGAAGAGGGACCACCATGAGTGGGGTAGTAAAATGAATAGAGAATTGGAGAGTGAGCTGGGTATGTTTTTGGTATGTGTATTCTAGAGAGAAAGAGTAGCAGTATGTTTTTGTTTGCTGTGTTTGCCTAATATAGTCCTCATGGTCTTCTCTTTTCATTTCATGGAATCAAGTGTTGAAGTTCTTGTTTGTGTTCTATATTTTGTTGAGACGTTGATTTAGTTATTCATTGACTGTACGTATGTGTTATGGATTCTTTGTAGGTTCAACTGGAGTCGACAAGTTCATGAGTTTTGTTTCAAATATCATTTCCAGAAACGAACATTCTCGGTTGGTCCAGTCAAATATATTCGAATGCTATTTAAGATATTTTTTGATTAAGGGCTAGTATTTCGTACATGTGGATTACTGAAACTTGTATTAAGATGTACAAATATTATAAATCGTATTATAGTGTATATATATTAAAGTGTTGGCTATTTTCTTGTACATTGGTGTGA

Coding sequence (CDS)

ATGAAGAATGATTTTAAAGAGTTGAAGATAACAATCGATGAGACATTGAGCTTTGAGTTATGTGAGAGTTCTTTTTTAACTGAGGTAACTCTCTCTCCCTTGTTTCTTAATTCTCTTCCTTTGCTTTCCAAATTGCCTCCTAGGCCATCTTGCCATTGTGAAATACTATTGGAATGTGAGTTTATTGGAAGTTTAATAGGTAACTGCTTAGATTCTTCTGCTAAAGTTCAAAATGTCCACACCTCCCAAGGAATAACTCACGGTTCAACTGGAGTCGACAAGTTCATGAGTTTTGTTTCAAATATCATTTCCAGAAACGAACATTCTCGGTTGGTCCAGTCAAATATATTCGAATGCTATTTAAGATATTTTTTGATTAAGGGCTAG

Protein sequence

MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYFLIKG

Homology

[Close]

BLAST of Cucsat.G4440.T31 vs. NCBI nr
Match: XP_031742120.1 (uncharacterized protein LOC116404065 isoform X4 [Cucumis sativus])

HSP 1 Score: 257 bits (656), Expect = 3.00e-86
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE 60
           MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE
Sbjct: 1   MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE 60

Query: 61  FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECY 120
           FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECY
Sbjct: 61  FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECY 120

Query: 121 LRYFLIKG 128
           LRYFLIKG
Sbjct: 121 LRYFLIKG 128

[Close]

BLAST of Cucsat.G4440.T31 vs. NCBI nr
Match: XP_031742119.1 (uncharacterized protein LOC116404065 isoform X3 [Cucumis sativus])

HSP 1 Score: 248 bits (634), Expect = 8.61e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 5   FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 64
           FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS
Sbjct: 12  FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 71

Query: 65  LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF 124
           LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF
Sbjct: 72  LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF 131

Query: 125 LIKG 128
           LIKG
Sbjct: 132 LIKG 135

[Close]

BLAST of Cucsat.G4440.T31 vs. NCBI nr
Match: XP_031742117.1 (uncharacterized protein LOC116404065 isoform X1 [Cucumis sativus] >XP_031742118.1 uncharacterized protein LOC116404065 isoform X2 [Cucumis sativus])

HSP 1 Score: 248 bits (634), Expect = 1.52e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 5   FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 64
           FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS
Sbjct: 29  FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 88

Query: 65  LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF 124
           LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF
Sbjct: 89  LIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSRLVQSNIFECYLRYF 148

Query: 125 LIKG 128
           LIKG
Sbjct: 149 LIKG 152

[Close]

BLAST of Cucsat.G4440.T31 vs. NCBI nr
Match: KAE8648189.1 (hypothetical protein Csa_018468, partial [Cucumis sativus])

HSP 1 Score: 220 bits (560), Expect = 7.30e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE 60
           MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE
Sbjct: 1   MKNDFKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECE 60

Query: 61  FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSR 110
           FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSR
Sbjct: 61  FIGSLIGNCLDSSAKVQNVHTSQGITHGSTGVDKFMSFVSNIISRNEHSR 110

[Close]

BLAST of Cucsat.G4440.T31 vs. NCBI nr
Match: XP_031745309.1 (uncharacterized protein LOC116405427 [Cucumis sativus])

HSP 1 Score: 157 bits (396), Expect = 9.03e-47
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 5   FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 64
           FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS
Sbjct: 38  FKELKITIDETLSFELCESSFLTEVTLSPLFLNSLPLLSKLPPRPSCHCEILLECEFIGS 97

Query: 65  LIGNCLDSSAKVQNVHTSQ 83
           LIGNCLDSSAKVQNVHTS+
Sbjct: 98  LIGNCLDSSAKVQNVHTSK 116

The following BLAST results are available for this feature:

BLAST of Cucsat.G4440.T31 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G4440.T31 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742120.1	3.00e-86	100.00	uncharacterized protein LOC116404065 isoform X4 [Cucumis sativus]	[more]
XP_031742119.1	8.61e-83	100.00	uncharacterized protein LOC116404065 isoform X3 [Cucumis sativus]	[more]
XP_031742117.1	1.52e-82	100.00	uncharacterized protein LOC116404065 isoform X1 [Cucumis sativus] >XP_031742118....	[more]
KAE8648189.1	7.30e-72	100.00	hypothetical protein Csa_018468, partial [Cucumis sativus]	[more]
XP_031745309.1	9.03e-47	98.73	uncharacterized protein LOC116405427 [Cucumis sativus]	[more]

BLAST of Cucsat.G4440.T31 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cucsat.G4440.T31 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G4440	Cucsat.G4440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4440.T31.E1	Cucsat.G4440.T31.E1	exon
Cucsat.G4440.T31.E2	Cucsat.G4440.T31.E2	exon
Cucsat.G4440.T31.E3	Cucsat.G4440.T31.E3	exon
Cucsat.G4440.T31.E4	Cucsat.G4440.T31.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4440.T31.C1	Cucsat.G4440.T31.C1	CDS
Cucsat.G4440.T31.C2	Cucsat.G4440.T31.C2	CDS
Cucsat.G4440.T31.C3	Cucsat.G4440.T31.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4440.T31	Cucsat.G4440.T31-protein	polypeptide