Cucsat.G4436.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G4436.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	U-box domain-containing protein 44-like
Location	ctg1173: 1272258 .. 1272644 (+)
RNA-Seq Expression	Cucsat.G4436.T4
Synteny	Cucsat.G4436.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCTAGATTTCAAGCTCATGAAAAGAAGTATGATATTTATACTTTTGAAATCAAGCAATTCATGAGTTCTTAATGTCAAATGGTTTCCATGTGTTTAGGTTCTGACATGAATAAGATCCTTATGGCAACGGGACTTTCAAGGATGGAGCACACTGAACAAAGTAAGGCCTCACTAGGAGAAGAAGGGGTAATTGAACCTCTTGTCCAAATGTTCCGTACTGAAAAACTTGAAGCTAAATTATCAGCATTGAGCGCATTGCAAAGCCTCTCCGGTTTGAAGGAAAATGTCCAACGATTGATTAGTTCTGGGATTGTCGTTTCACTGCTTCAGCTTCTATTCTCTGTAACCTCTGTGCTTATGACTCTACGAGAGCCTGCAGCTGC

Coding sequence (CDS)

AATCTAGATTTCAAGCTCATGAAAAGAAGTTCTGACATGAATAAGATCCTTATGGCAACGGGACTTTCAAGGATGGAGCACACTGAACAAAGTAAGGCCTCACTAGGAGAAGAAGGGGTAATTGAACCTCTTGTCCAAATGTTCCGTACTGAAAAACTTGAAGCTAAATTATCAGCATTGAGCGCATTGCAAAGCCTCTCCGGTTTGAAGGAAAATGTCCAACGATTGATTAGTTCTGGGATTGTCGTTTCACTGCTTCAGCTTCTATTCTCTGTAACCTCTGTGCTTATGACTCTACGAGAGCCTGCAGCT

Protein sequence

NLDFKLMKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA

Homology

[Close]

BLAST of Cucsat.G4436.T4 vs. NCBI nr
Match: XP_011654477.1 (U-box domain-containing protein 44 [Cucumis sativus] >KGN49633.1 hypothetical protein Csa_018414 [Cucumis sativus])

HSP 1 Score: 167 bits (422), Expect = 1.67e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 11  SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 70
           SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK
Sbjct: 346 SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 405

Query: 71  ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA
Sbjct: 406 ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 439

[Close]

BLAST of Cucsat.G4436.T4 vs. NCBI nr
Match: XP_008450258.1 (PREDICTED: U-box domain-containing protein 44-like [Cucumis melo] >KAA0058419.1 U-box domain-containing protein 44-like [Cucumis melo var. makuwa] >TYK15339.1 U-box domain-containing protein 44-like [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 2.29e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 11  SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 70
           SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK
Sbjct: 346 SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 405

Query: 71  ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           EN+QRLISSGIVVSLLQLLFSVTSVLMTLREPAA
Sbjct: 406 ENIQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 439

[Close]

BLAST of Cucsat.G4436.T4 vs. NCBI nr
Match: XP_022993433.1 (U-box domain-containing protein 44-like [Cucurbita maxima])

HSP 1 Score: 162 bits (411), Expect = 5.46e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 7   MKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSL 66
           +K  SDMNKILMATGLSRMEHTEQSKASLGEEG IEPLVQMFRTEKLEAKLSALSALQSL
Sbjct: 347 LKEGSDMNKILMATGLSRMEHTEQSKASLGEEGAIEPLVQMFRTEKLEAKLSALSALQSL 406

Query: 67  SGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           SGL ENVQRLI SG+V+SLLQLLFSVTSVLMTLREPAA
Sbjct: 407 SGLNENVQRLIDSGMVISLLQLLFSVTSVLMTLREPAA 444

[Close]

BLAST of Cucsat.G4436.T4 vs. NCBI nr
Match: KAG6601143.1 (U-box domain-containing protein 24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (402), Expect = 9.41e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 7   MKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSL 66
           +K  SDMNKILMATGLSRMEHTEQ+KASLGEEG IEPLVQMFRTEKLEAKLSALSALQSL
Sbjct: 347 LKEGSDMNKILMATGLSRMEHTEQTKASLGEEGAIEPLVQMFRTEKLEAKLSALSALQSL 406

Query: 67  SGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           S L ENVQRLI SG+V+SLLQLLFSVTSVLMTLREPAA
Sbjct: 407 SALNENVQRLIDSGMVISLLQLLFSVTSVLMTLREPAA 444

[Close]

BLAST of Cucsat.G4436.T4 vs. NCBI nr
Match: KAG7031942.1 (U-box domain-containing protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 9.41e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 7   MKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSL 66
           +K  SDMNKILMATGLSRMEHTEQ+KASLGEEG IEPLVQMFRTEKLEAKLSALSALQSL
Sbjct: 347 LKEGSDMNKILMATGLSRMEHTEQTKASLGEEGAIEPLVQMFRTEKLEAKLSALSALQSL 406

Query: 67  SGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           S L ENVQRLI SG+V+SLLQLLFSVTSVLMTLREPAA
Sbjct: 407 SALNENVQRLIDSGMVISLLQLLFSVTSVLMTLREPAA 444

[Close]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL
Match: A0A0A0KJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034000 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 8.09e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 11  SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 70
           SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK
Sbjct: 346 SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 405

Query: 71  ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA
Sbjct: 406 ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 439

[Close]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL
Match: A0A5D3CYU0 (U-box domain-containing protein 44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold551G00010 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.11e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 11  SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 70
           SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK
Sbjct: 346 SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 405

Query: 71  ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           EN+QRLISSGIVVSLLQLLFSVTSVLMTLREPAA
Sbjct: 406 ENIQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 439

[Close]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL
Match: A0A1S3BPH2 (U-box domain-containing protein 44-like OS=Cucumis melo OX=3656 GN=LOC103491920 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.11e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 11  SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 70
           SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK
Sbjct: 346 SDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLK 405

Query: 71  ENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           EN+QRLISSGIVVSLLQLLFSVTSVLMTLREPAA
Sbjct: 406 ENIQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 439

[Close]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL
Match: A0A6J1K275 (U-box domain-containing protein 44-like OS=Cucurbita maxima OX=3661 GN=LOC111489427 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 2.65e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 7   MKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSL 66
           +K  SDMNKILMATGLSRMEHTEQSKASLGEEG IEPLVQMFRTEKLEAKLSALSALQSL
Sbjct: 347 LKEGSDMNKILMATGLSRMEHTEQSKASLGEEGAIEPLVQMFRTEKLEAKLSALSALQSL 406

Query: 67  SGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           SGL ENVQRLI SG+V+SLLQLLFSVTSVLMTLREPAA
Sbjct: 407 SGLNENVQRLIDSGMVISLLQLLFSVTSVLMTLREPAA 444

[Close]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL
Match: A0A6J1H0T2 (U-box domain-containing protein 44-like OS=Cucurbita moschata OX=3662 GN=LOC111458901 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 6.25e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 7   MKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSL 66
           +K  SDMNKILMATGLSRMEHT+QSKASLGEEG IEPLVQMFRTEKLEAKLSALSALQSL
Sbjct: 347 LKEGSDMNKILMATGLSRMEHTKQSKASLGEEGAIEPLVQMFRTEKLEAKLSALSALQSL 406

Query: 67  SGLKENVQRLISSGIVVSLLQLLFSVTSVLMTLREPAA 104
           S L ENVQRLI SG+V+SLLQLLFSVTSVLMTLREPAA
Sbjct: 407 SALNENVQRLIDSGMVISLLQLLFSVTSVLMTLREPAA 444

[Close]

BLAST of Cucsat.G4436.T4 vs. TAIR 10
Match: AT3G01400.1 (ARM repeat superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 5   KLMKRSSDMNKILMATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQ 64
           + +K  +   K   A  L R+   E++K ++G  G I  LV +  T    AK  A +AL 
Sbjct: 153 RALKMGTPTAKENAACALLRLSQIEENKVAIGRSGAIPLLVNLLETGGFRAKKDASTALY 212

Query: 65  SLSGLKENVQRLISSGIVVSLLQLL 90
           SL   KEN  R + SGI+  L++L+
Sbjct: 213 SLCSAKENKIRAVQSGIMKPLVELM 237

[Close]

BLAST of Cucsat.G4436.T4 vs. TAIR 10
Match: AT5G58680.1 (ARM repeat superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-04
Identity = 26/76 (34.21%), Postives = 38/76 (50.00%), Query Frame = 0


Query: 19  ATGLSRMEHTEQSKASLGEEGVIEPLVQMFRTEKLEAKLSALSALQSLSGLKENVQRLIS 78
           A  L R+   E++K ++G  G I  LV +       AK  A +AL SL    EN  R + 
Sbjct: 165 ACALLRLSQVEENKITIGRSGAIPLLVNLLENGGFRAKKDASTALYSLCSTNENKTRAVE 224

Query: 79  SGIVVSLLQLLFSVTS 95
           SGI+  L++L+    S
Sbjct: 225 SGIMKPLVELMIDFES 240

The following BLAST results are available for this feature:

BLAST of Cucsat.G4436.T4 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G4436.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654477.1	1.67e-45	100.00	U-box domain-containing protein 44 [Cucumis sativus] >KGN49633.1 hypothetical pr...	[more]
XP_008450258.1	2.29e-45	98.94	PREDICTED: U-box domain-containing protein 44-like [Cucumis melo] >KAA0058419.1 ...	[more]
XP_022993433.1	5.46e-44	91.84	U-box domain-containing protein 44-like [Cucurbita maxima]	[more]
KAG6601143.1	9.41e-43	89.80	U-box domain-containing protein 24, partial [Cucurbita argyrosperma subsp. soror...	[more]
KAG7031942.1	9.41e-43	89.80	U-box domain-containing protein 43, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Cucsat.G4436.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJA7	8.09e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034000 PE=4 SV=1	[more]
A0A5D3CYU0	1.11e-45	98.94	U-box domain-containing protein 44-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BPH2	1.11e-45	98.94	U-box domain-containing protein 44-like OS=Cucumis melo OX=3656 GN=LOC103491920 ...	[more]
A0A6J1K275	2.65e-44	91.84	U-box domain-containing protein 44-like OS=Cucurbita maxima OX=3661 GN=LOC111489...	[more]
A0A6J1H0T2	6.25e-43	89.80	U-box domain-containing protein 44-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Cucsat.G4436.T4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01400.1	1.2e-04	34.12	ARM repeat superfamily protein	[more]
AT5G58680.1	4.6e-04	34.21	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 4..104 e-value: 9.8E-11 score: 43.5
None	No IPR available	PANTHER	PTHR45958	RING-TYPE E3 UBIQUITIN TRANSFERASE	coord: 6..104
None	No IPR available	PANTHER	PTHR45958:SF12	ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE	coord: 6..104
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 6..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G4436	Cucsat.G4436	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4436.T4.E1	Cucsat.G4436.T4.E1	exon
Cucsat.G4436.T4.E2	Cucsat.G4436.T4.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4436.T4.C1	Cucsat.G4436.T4.C1	CDS
Cucsat.G4436.T4.C2	Cucsat.G4436.T4.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4436.T4	Cucsat.G4436.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding