Cucsat.G4275.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G4275.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionCOBW domain-containing protein 1
Locationctg1170: 663482 .. 667981 (-)
RNA-Seq ExpressionCucsat.G4275.T3
SyntenyCucsat.G4275.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTTTCGTAGCTTTCAAGTCTCACGTGCTCCACCCTCTCCTATTTCTTTCCGTTTAGCATCTCAGTTCCGCCGCTGCCGTTCTTCGGTTCGTGCTCGTACAGCATCCTATCTAACGGCTCTGCACTGATTGGTATTCTCCCAATCTCCATCTATCTCTGTCTCCTCACTCGAATAACGAAAGAATGGAAGATTTGTATGTATTATCATGAATTTTCCAGCATCTCCCTTCTCAGTCGAAGTAATTCAATTATCTTTTAATCACAAGCACGTCCGGCGGCTATCTTTTAATTGACCGAACAACCTCAACAATATTTCTATTTTGTATATTTGTTTAACCAATGATGGTCTGAATTTACTGAATATAAAAGCCTTCCTAGTTCCTTATGCTTCATACTTGATACTCCACCCTCCATTTATTCTTCTTCTATTGCTATTATTATATTTCTATAGTTGATTGTGTCAAATTAGAGTCTGTGACTGTTTTGAATGATAGCTGGACGTGTTTCGATTGATTTTTTGTATTGAAAATGTTTATGTTTTGGTTTTGTTACTTCTGACTAATTGGAGAAGTTTTATAGCTCCATTGGTTTGGGCATGCTGTCTTTTTTCGTGTGTGTGTGTGTAAATTTCATACATCAATGAAATTTGTTTCTTATAAAAAAGATGAAAGGTTTGGATGATTTGATTTGATGATTTCTTCTGCTGAGATTGCAATTTGAAACTGTGTGTTTTGTTTGAAATGTTTATGAATGATTCGGATGCCAAATCGATGGTGTAGTTGTCTTTCCGCTTGCTAATTAAAACAAAGTAATAAAGTGTAAGTGAACTTTCTTTTGGGCCTGAATATCGAACTCGATTGGGAAAACACCAGGACGGGCCAAAGAAACAGTTGGTTGGGATGAAATGTTAATTACTAATTCTGAGGAAGTTAATGAGGTTGGACCTTAATTATTGAAAGCCAAGGATTTTTTTTATTAAATACAACTTGCTTTTCATTTTATGGATGGAGTTCAACTCTTTGTTTTTGGTGCTGTTTTTAGGTCAGTTTTTGTTTAATCTCCCAGAAATTTTTTATGAGTGAGTGTCTAGATAGCTTATGCCTACCTTGATTAATTTCAGTCAGAAAGCAGATGTATTGAAGGTCAATTATCAAATTGAAACTACCAAACCCAAATCCACGGCTACGATTTGAAAAATGGAAGATGAAGATCCACCACTCGCTGTTGAGATTGGCGAAACAATTACAGCTGTCCAACAACATGAAGATGATGGTGTTTCTGTTGGCGTTACAGTTATCACTGGATATCTTGGAGCTGGAAAATCCACCGTAACTTACACTCTGAAACTTTTCTCCTTACCCCCTCACTCGATTTCTTTTTGCAACCATCAAATTTGAGCTATAGAATGATATTTCTTGTTTGGTGGAATTCAGTTGGTTAATTACGTATTGAACTCGCAACATGGCAAGAGAATTGCTGTTATACTGAACGAATTTGGGGAGGAAATTGGAATTGAGAGGGCAATGATAAATGAAGGTGACGGTGGGGCGTTGGTTGAGGAATGGGTCGAATTAGCAAATGGATGTATTTGTTGCACTGTTAAGCATAGCCTGGTTCAAGCCTTGGAGCAACTTGTGCAGAGAAAAGAAAGGTATTCTCTTGCTGTTATATTAGATTTCAATGGAGCTTCTGGAAAAATACGTTGATGATTTAGTCCATCTTACATGTCTCTAGGCTCGATCATATTTTGTTGGAAACTACGGGATTAGCCAATCCTGCTCCACTTGCTTCTGTACTTTGGCTGGACGATCAATTGGAATCATCGATCAAGCTTGATTCAATTATTACAGTCAGTTCTTAGTTCTTGTTCCTTCACGGTTTGAGTTAGTTTCCCCAAGTTTACTTTGAAATACGTATTATAGTTTGGAAATGTTTGTGAATTACATGCTATAGTTCTTAAGTTTAAGAATGTGTCATATTTGATGTTTGATTGAAATTAAGATAGCCAATGAAGCTTAAGTTTCCCCTTGTTCTAAGGTTAAATTTATGTGTTGGCTTTCGTTTCTATGTTGTTATTTAATTCGATTTTGTCTGTCCATGTGTGAATGCATGGTGTAGTAAATACTTGAATGCTTCAAACTTTGTTTTAAATTCTTTTTCTAGTGATCTAAAGGTTTCACCCAATAATAACTCCTTATGTTCATTTGGATGAATACATGCAAGTAGGTCGTGGATGCTAAAAATCTTCATTTTCAATTGAATGAGCACCGTAGTTCATCATCCTTTCCGGAAGCATTTCATCAAATTGTGTTTGCGGTAATATTCTTATTCTTAGTTCTTTTATGGTCTCTGCAAGTTTGCAATCTACTATTAATTATGTCAAGCAACTGCTGGGATCTTCATTATTTTTCATTTTTCATTCCATTATTACTTAGTATTTTTGTTTGTTTTATTTCTGTCTCTCTTGCTATATGGTTTGTTTTATTTCTCTCTTTTGCTATATGGTTTGTTTTATTTCTCTCTTTTGCTATATGGTTTTCTCAATAATTGTCCAATGTGCACGCCTAAGAAGTTGTGAATCTGTTATCCATCATAGGATACTATTATTCTTAACAAGGTCGACCTGGTCTCTTCAGATCGTGGTGATGGTGCATTGGAGGACCTGGAGTATGAAATACGTAACATTAATTCTCTTGCCAAAATCATTCACTCTGTTCGGTGTCAAGTAGACCTGTCTCTCATACTAGACTGCAATTCCTATAATGCTGCTGTTAGTCATGAACTTAACTTTAACCCCCCAGCTCATTTTCTATTTTTGTATCTGTCCTCTTTATCTAATACTATTCAGTTTTTCCTCATTTAGAATACAGCTCATTTAGAAGCATTATTGAAAGAAAGTTGTTCTTTATCTACTCAAGATCTTCATGATACTGGTGTTCGAACCTTGTGCATTAGTGAACACGACAAAGTTGACCTTGATAAGGTAGTTTCATGTATTTCCGTTAAAGATTGTGTGGTTCCATTCAACTAGTTTCTAGTGATAGATCATCTATGCTGAATTGTTATGACATCCTGTCGTGAACCTGTAGGATAGGATCCTTCTTATTTTAAATTGCTTAGGCATTTAAGAATTTCACGACCTGGAGTGTAGCTACATCCATGCTGATTTATGTTTTAGCCAAAGATCCATTGAAGTAATAATATTCTGAACTACTAATATATCTTTCCATTGGCTTGCTGATCTATTTAACGAAGTATTTAACTTCCGAAGTGATTATATAAATCACTCATCTTCACTATGAGCATGATGATTGAAGTAGGCACAATTCGTACAAGCAATATAAGTTACTGCCTTGGAAATTCATGATATTTCTCGTTAATCTGCATTTCATATCCGATCTTCGTGATGGTGCTATTCTCATGCCTACCTTATTTTGCAATAGGTTCATTCTTGGCTTGAGGAGATACTTTGGGAGAAAAAAGGTGGCATGGATGTGTATCGTTGCAAAGGAGTTTTAAGCATAAAAAATTCTGATCAGCTACATACTTTGCAGGTAGATTATGTGCTTAATCCTATAGTTTTTGCTGTTGGAAAATCACTCCAAACAGGCTTCTTTTTTAACCATCGTCCTAATTTCCCATCCTTTGTTAATCCGATTTCCATGCATTCCTTTTGGGTTTTGAACCCAAATGAAAAGGTTGAGTTATTGCGATGATACTTCCTAACAAGAACACTCAAGAACAACACAGAAAACTCAAGAAGACTCAAATATAAAAACATATGGAAATATACTGTAATATATATTATAAGAGAAGTAGCAAGATAACCTTGCCTTCCAAGTGGGCTAGTCCAAAGGAAATCTCACAAAATTCCTCACTCTTTGCTCCTTATCTCATTCCCTTTATTTATAAGCCCTAACAATACCAACATTCTACTACTAATCCTACTATATCTCTAACTAGGGAGCTCTTTTTCATGTTAATGACTGATTTTGATTGGTGGCTGACAGGCAGTTCGGGAATTATACGAGATCGTTCCTACACGGCAATGGAACAATGGAGAAAGTCAGACGAACAAGATAGTGTTCATAGGTAAAAGACATACAAAAATATCCACGCCCATGAACTCTTACAATGTGTTTATTGTTGAAACTTACACATTGTCCATAATATGCAGGTCGTAATCTGAACGAGGATGTTCTCAGCAAAACCTTTAGAGAATGTGCTTCTATCTCCTAAATTTTGTTGCTTTACTATTTGTTCGACTACATAGGCAAACAAGGAAGAGCATATGCGTAGGTGAAATGGTTTTGTATGATTTCGAAGTCCTTTTTTTGTATGTTAACTTGGATAAGTGTTTCCTAAATTAACTGTCTTTCGGTCTTGTTAGAGGTGTTCTAGAAAGGTTTTTGATGGAAAGATTTGTGAACGAAGGTACCATTGGATGTTTATTTTTCTAAATGAAAGTTCTTTTGAAAGTTAACATTGCAATAAAAAT

Coding sequence (CDS)

ATGGAAGATGAAGATCCACCACTCGCTGTTGAGATTGGCGAAACAATTACAGCTGTCCAACAACATGAAGATGATGGTGTTTCTGTTGGCGTTACAGTTATCACTGGATATCTTGGAGCTGGAAAATCCACCTTGGTTAATTACGTATTGAACTCGCAACATGGCAAGAGAATTGCTGTTATACTGAACGAATTTGGGGAGGAAATTGGAATTGAGAGGGCAATGATAAATGAAGGTGACGGTGGGGCGTTGGTTGAGGAATGGGTCGAATTAGCAAATGGATGTATTTGTTGCACTGTTAAGCATAGCCTGGTTCAAGCCTTGGAGCAACTTGTGCAGAGAAAAGAAAGGCTCGATCATATTTTGTTGGAAACTACGGGATTAGCCAATCCTGCTCCACTTGCTTCTGTACTTTGGCTGGACGATCAATTGGAATCATCGATCAAGCTTGATTCAATTATTACAGTCGTGGATGCTAAAAATCTTCATTTTCAATTGAATGAGCACCGTAGTTCATCATCCTTTCCGGAAGCATTTCATCAAATTGTGTTTGCGATCGTGGTGATGGTGCATTGGAGGACCTGGAGTATGAAATACGTAACATTAATTCTCTTGCCAAAATCATTCACTCTGTTCGGTGTCAAGTAG

Protein sequence

MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQIVFAIVVMVHWRTWSMKYVTLILLPKSFTLFGVK
Homology
[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match: Q9BRT8 (COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-43
Identity = 90/189 (47.62%), Postives = 127/189 (67.20%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHIL 122
           NEFGE   +E+++     GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+IL
Sbjct: 76  NEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYIL 135

Query: 123 LETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQI 182
           LETTGLA+P  +AS+ W+D +L S I LD IIT+VD+K     L E +      EA  Q+
Sbjct: 136 LETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQV 195

Query: 183 VFAIVVMVH 192
             A  ++++
Sbjct: 196 ALADAILIN 203

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match: Q8IUF1 (COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.0e-42
Identity = 88/189 (46.56%), Postives = 127/189 (67.20%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V +  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPMETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHIL 122
           NEFGE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+IL
Sbjct: 76  NEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYIL 135

Query: 123 LETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQI 182
           LETTGLA+P  +AS+ W+D +L S I LD IIT+VD+K     L E +      EA  Q+
Sbjct: 136 LETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQV 195

Query: 183 VFAIVVMVH 192
             A  ++++
Sbjct: 196 ALADAILIN 203

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match: Q5JTY5 (COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 88/189 (46.56%), Postives = 126/189 (66.67%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHIL 122
           NE GE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D IL
Sbjct: 76  NESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDIL 135

Query: 123 LETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQI 182
           LETTGLA+P  +AS+ W+D +L S I LD IIT+VD+K     L E +      EA  Q+
Sbjct: 136 LETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQV 195

Query: 183 VFAIVVMVH 192
             A +++++
Sbjct: 196 ALADIILIN 203

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match: Q4V339 (COBW domain-containing protein 6 OS=Homo sapiens OX=9606 GN=CBWD6 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 88/189 (46.56%), Postives = 126/189 (66.67%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHIL 122
           NE GE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D IL
Sbjct: 76  NESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDIL 135

Query: 123 LETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQI 182
           LETTGLA+P  +AS+ W+D +L S I LD IIT+VD+K     L E +      EA  Q+
Sbjct: 136 LETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQV 195

Query: 183 VFAIVVMVH 192
             A +++++
Sbjct: 196 ALADIILIN 203

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match: Q8VEH6 (COBW domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cbwd1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-41
Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 0 

Query: 4   EDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILN 63
           ED P  V I ET    +++ D    + VT++TGYLGAGK+TL+NY+L  QH ++IAVILN
Sbjct: 16  EDCPELVPI-ETKNQEEENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILN 75

Query: 64  EFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILL 123
           EFGE   +E+++     GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILL
Sbjct: 76  EFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILL 135

Query: 124 ETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQIV 183
           ETTGLA+P  +AS+ W+D +L S I LD IITVVD+K     L E +      EA  Q+ 
Sbjct: 136 ETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVA 195

Query: 184 FAIVVMVH 192
            A +++++
Sbjct: 196 LADMILIN 201

[Close]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match: XP_031742495.1 (COBW domain-containing protein 1-like [Cucumis sativus] >XP_031742496.1 COBW domain-containing protein 1-like [Cucumis sativus] >KGN47644.1 hypothetical protein Csa_018976 [Cucumis sativus])

HSP 1 Score: 363 bits (932), Expect = 3.36e-123
Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180
           ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 181 QIVFAIVVMVH 191
           QIVFA  ++++
Sbjct: 181 QIVFADTIILN 191

[Close]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match: XP_031742511.1 (COBW domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 362 bits (928), Expect = 1.36e-122
Identity = 183/191 (95.81%), Postives = 189/191 (98.95%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKST++NYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTVINYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180
           ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 181 QIVFAIVVMVH 191
           QIVFA  ++++
Sbjct: 181 QIVFADTIILN 191

[Close]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match: XP_016899917.1 (PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899918.1 PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899919.1 PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 353 bits (906), Expect = 3.09e-119
Identity = 180/192 (93.75%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           HQIVFA  ++++
Sbjct: 181 HQIVFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match: KAA0064757.1 (COBW domain-containing protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (906), Expect = 3.19e-119
Identity = 180/192 (93.75%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           HQIVFA  ++++
Sbjct: 181 HQIVFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match: KAG7029568.1 (COBW domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349 bits (896), Expect = 6.57e-119
Identity = 177/192 (92.19%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESS+KLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSVKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           +QI FA  ++++
Sbjct: 181 YQIAFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match: A0A0A0KFM6 (CobW C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366420 PE=3 SV=1)

HSP 1 Score: 363 bits (932), Expect = 1.62e-123
Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180
           ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 181 QIVFAIVVMVH 191
           QIVFA  ++++
Sbjct: 181 QIVFADTIILN 191

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match: A0A1S4DVA6 (COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488574 PE=3 SV=1)

HSP 1 Score: 353 bits (906), Expect = 1.49e-119
Identity = 180/192 (93.75%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           HQIVFA  ++++
Sbjct: 181 HQIVFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match: A0A5A7VCN1 (COBW domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00610 PE=3 SV=1)

HSP 1 Score: 353 bits (906), Expect = 1.54e-119
Identity = 180/192 (93.75%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           HQIVFA  ++++
Sbjct: 181 HQIVFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match: A0A6J1HE98 (COBW domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462688 PE=3 SV=1)

HSP 1 Score: 349 bits (896), Expect = 4.77e-118
Identity = 177/192 (92.19%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESS+KLDSIITVVDAKNLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSVKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           +QI FA  ++++
Sbjct: 181 YQIAFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match: A0A6J1K8W5 (COBW domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492164 PE=3 SV=1)

HSP 1 Score: 348 bits (893), Expect = 1.36e-117
Identity = 176/192 (91.67%), Postives = 187/192 (97.40%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 HILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAF 180
           HILLETTGLANPAPLASVLWLDDQLESS+KLDSIITVVDA+NLHFQLNEHRSSSSFPEAF
Sbjct: 121 HILLETTGLANPAPLASVLWLDDQLESSVKLDSIITVVDARNLHFQLNEHRSSSSFPEAF 180

Query: 181 HQIVFAIVVMVH 191
           +QI FA  ++++
Sbjct: 181 YQIAFADTIILN 192

[Close]
BLAST of Cucsat.G4275.T3 vs. TAIR 10
Match: AT1G26520.1 (Cobalamin biosynthesis CobW-like protein )

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-81
Identity = 148/191 (77.49%), Postives = 171/191 (89.53%), Query Frame = 0 

Query: 2   EDEDPPLAVEIGETITAVQQH-EDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 61
           +DE+PP+AV+I   ++  + H   D VSVGV+VITGYLGAGKSTLVNY+LN +HGKRIAV
Sbjct: 14  DDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKRIAV 73

Query: 62  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 121
           ILNEFGEEIG+ERAMINEG+ GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+RLDH
Sbjct: 74  ILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDRLDH 133

Query: 122 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 181
           ILLETTGLANPAPLAS+LWLDDQLES +KLD I+TVVDAKNL FQLNE R SSSFPEAF+
Sbjct: 134 ILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPEAFN 193

Query: 182 QIVFAIVVMVH 192
           QI FA  ++++
Sbjct: 194 QIAFADTIIMN 204

[Close]
BLAST of Cucsat.G4275.T3 vs. TAIR 10
Match: AT1G15730.1 (Cobalamin biosynthesis CobW-like protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-35
Identity = 80/188 (42.55%), Postives = 121/188 (64.36%), Query Frame = 0 

Query: 5   DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNE 64
           D  LAV   E I  V         +  T+ITG+LG+GK+TL+N++L   HGKRIAVI NE
Sbjct: 68  DSSLAVVDDEDIFDVASEILPDNRIPATIITGFLGSGKTTLLNHILTGDHGKRIAVIENE 127

Query: 65  FGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQ-RKERLDHILL 124
           FG E+ I+ +++     GA  E+ + L NGC+CCTV+  LV+ + ++VQ +K R DHI++
Sbjct: 128 FG-EVDIDGSLVAAQTAGA--EDIMMLNNGCLCCTVRGDLVRMISEMVQTKKGRFDHIVI 187

Query: 125 ETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQIV 184
           ETTGLANPAP+    + +D++ + +KLD ++T+VDAK+    L+E +      EA  QI 
Sbjct: 188 ETTGLANPAPIIQTFYAEDEIFNDVKLDGVVTLVDAKHARLHLDEVKPEGYVNEAVEQIA 247

Query: 185 FAIVVMVH 192
           +A  ++V+
Sbjct: 248 YADRIIVN 252

[Close]
BLAST of Cucsat.G4275.T3 vs. TAIR 10
Match: AT1G80480.1 (plastid transcriptionally active 17 )

HSP 1 Score: 141.7 bits (356), Expect = 6.7e-34
Identity = 72/164 (43.90%), Postives = 113/164 (68.90%), Query Frame = 0 

Query: 29  VGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNEFGEEIGIERAMINEGDGGALVEEW 88
           +  T+ITG+LG+GK+TL+N++L   HGKRIAVI NEFG E+ I+ +++     GA  E+ 
Sbjct: 89  IPATIITGFLGSGKTTLLNHILTRDHGKRIAVIENEFG-EVDIDGSLVASKSIGA--EDI 148

Query: 89  VELANGCICCTVKHSLVQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESS 148
           V L NGC+CCTV+  LV+ + +LV  +K + DHI++ETTGLANPAP+    + ++++ + 
Sbjct: 149 VMLNNGCLCCTVRGDLVRMIGELVNTKKGKFDHIVIETTGLANPAPIIQTFYAEEEIFND 208

Query: 149 IKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFHQIVFAIVVMVH 192
           +KLD ++T+VDAK+    L+E +      EA  QI +A  ++V+
Sbjct: 209 VKLDGVVTLVDAKHARLHLDEVKPEGVVNEAVEQIAYADRIIVN 249

The following BLAST results are available for this feature:
BLAST of Cucsat.G4275.T3 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9BRT85.9e-4347.62COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=1 SV=1[more]
Q8IUF15.0e-4246.56COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1[more]
Q5JTY51.1e-4146.56COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=1 SV=1[more]
Q4V3391.1e-4146.56COBW domain-containing protein 6 OS=Homo sapiens OX=9606 GN=CBWD6 PE=3 SV=1[more]
Q8VEH61.9e-4147.87COBW domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cbwd1 PE=1 SV=1[more]
BLAST of Cucsat.G4275.T3 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031742495.13.36e-12396.86COBW domain-containing protein 1-like [Cucumis sativus] >XP_031742496.1 COBW dom... [more]
XP_031742511.11.36e-12295.81COBW domain-containing protein 1 [Cucumis sativus][more]
XP_016899917.13.09e-11993.75PREDICTED: COBW domain-containing protein 1 isoform X1 [Cucumis melo] >XP_016899... [more]
KAA0064757.13.19e-11993.75COBW domain-containing protein 1 isoform X1 [Cucumis melo var. makuwa][more]
KAG7029568.16.57e-11992.19COBW domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Cucsat.G4275.T3 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFM61.62e-12396.86CobW C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G36... [more]
A0A1S4DVA61.49e-11993.75COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488... [more]
A0A5A7VCN11.54e-11993.75COBW domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1HE984.77e-11892.19COBW domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462688 P... [more]
A0A6J1K8W51.36e-11791.67COBW domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492164 PE=... [more]
BLAST of Cucsat.G4275.T3 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26520.11.5e-8177.49Cobalamin biosynthesis CobW-like protein [more]
AT1G15730.11.6e-3542.55Cobalamin biosynthesis CobW-like protein [more]
AT1G80480.16.7e-3443.90plastid transcriptionally active 17 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 28..193
e-value: 6.0E-54
score: 184.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..191
IPR003495CobW/HypB/UreG, nucleotide-binding domainPFAMPF02492cobWcoord: 31..189
e-value: 7.7E-45
score: 152.6
NoneNo IPR availablePANTHERPTHR13748:SF31COBW DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 20..190
NoneNo IPR availablePANTHERPTHR13748COBW-RELATEDcoord: 20..190
NoneNo IPR availableCDDcd03112CobW-likecoord: 31..188
e-value: 6.18382E-74
score: 220.47

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G4275Cucsat.G4275gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T3.E1Cucsat.G4275.T3.E1exon
Cucsat.G4275.T3.E2Cucsat.G4275.T3.E2exon
Cucsat.G4275.T3.E3Cucsat.G4275.T3.E3exon
Cucsat.G4275.T3.E4Cucsat.G4275.T3.E4exon
Cucsat.G4275.T3.E5Cucsat.G4275.T3.E5exon
Cucsat.G4275.T3.E6Cucsat.G4275.T3.E6exon
Cucsat.G4275.T3.E7Cucsat.G4275.T3.E7exon
Cucsat.G4275.T3.E8Cucsat.G4275.T3.E8exon
Cucsat.G4275.T3.E9Cucsat.G4275.T3.E9exon
Cucsat.G4275.T3.E10Cucsat.G4275.T3.E10exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T3.C5Cucsat.G4275.T3.C5CDS
Cucsat.G4275.T3.C4Cucsat.G4275.T3.C4CDS
Cucsat.G4275.T3.C3Cucsat.G4275.T3.C3CDS
Cucsat.G4275.T3.C2Cucsat.G4275.T3.C2CDS
Cucsat.G4275.T3.C1Cucsat.G4275.T3.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T3Cucsat.G4275.T3-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm