Cucsat.G4275.T20 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G4275.T20
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionCOBW domain-containing protein 1
Locationctg1170: 663491 .. 667903 (-)
RNA-Seq ExpressionCucsat.G4275.T20
SyntenyCucsat.G4275.T20
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTTCTTCGGTTCGTGCTCGTACAGCATCCTATCTAACGGCTCTGCACTGATTGGTATTCTCCCAATCTCCATCTATCTCTGTCTCCTCACTCGAATAACGAAAGAATGGAAGATTTGTATGTATTATCATGAATTTTCCAGCATCTCCCTTCTCAGTCGAAGTAATTCAATTATCTTTTAATCACAAGCACGTCCGGCGGCTATCTTTTAATTGACCGAACAACCTCAACAATATTTCTATTTTGTATATTTGTTTAACCAATGATGGTCTGAATTTACTGAATATAAAAGCCTTCCTAGTTCCTTATGCTTCATACTTGATACTCCACCCTCCATTTATTCTTCTTCTATTGCTATTATTATATTTCTATAGTTGATTGTGTCAAATTAGAGTCTGTGACTGTTTTGAATGATAGCTGGACGTGTTTCGATTGATTTTTTGTATTGAAAATGTTTATGTTTTGGTTTTGTTACTTCTGACTAATTGGAGAAGTTTTATAGCTCCATTGGTTTGGGCATGCTGTCTTTTTTCGTGTGTGTGTGTGTAAATTTCATACATCAATGAAATTTGTTTCTTATAAAAAAGATGAAAGGTTTGGATGATTTGATTTGATGATTTCTTCTGCTGAGATTGCAATTTGAAACTGTGTGTTTTGTTTGAAATGTTTATGAATGATTCGGATGCCAAATCGATGGTGTAGTTGTCTTTCCGCTTGCTAATTAAAACAAAGTAATAAAGTGTAAGTGAACTTTCTTTTGGGCCTGAATATCGAACTCGATTGGGAAAACACCAGGACGGGCCAAAGAAACAGTTGGTTGGGATGAAATGTTAATTACTAATTCTGAGGAAGTTAATGAGGTTGGACCTTAATTATTGAAAGCCAAGGATTTTTTTTATTAAATACAACTTGCTTTTCATTTTATGGATGGAGTTCAACTCTTTGTTTTTGGTGCTGTTTTTAGGTCAGTTTTTGTTTAATCTCCCAGAAATTTTTTATGAGTGAGTGTCTAGATAGCTTATGCCTACCTTGATTAATTTCAGTCAGAAAGCAGATGTATTGAAGGTCAATTATCAAATTGAAACTACCAAACCCAAATCCACGGCTACGATTTGAAAAATGGAAGATGAAGATCCACCACTCGCTGTTGAGATTGGCGAAACAATTACAGCTGTCCAACAACATGAAGATGATGGTGTTTCTGTTGGCGTTACAGTTATCACTGGATATCTTGGAGCTGGAAAATCCACCGTAACTTACACTCTGAAACTTTTCTCCTTACCCCCTCACTCGATTTCTTTTTGCAACCATCAAATTTGAGCTATAGAATGATATTTCTTGTTTGGTGGAATTCAGTTGGTTAATTACGTATTGAACTCGCAACATGGCAAGAGAATTGCTGTTATACTGAACGAATTTGGGGAGGAAATTGGAATTGAGAGGGCAATGATAAATGAAGGTGACGGTGGGGCGTTGGTTGAGGAATGGGTCGAATTAGCAAATGGATGTATTTGTTGCACTGTTAAGCATAGCCTGGTTCAAGCCTTGGAGCAACTTGTGCAGAGAAAAGAAAGGTATTCTCTTGCTGTTATATTAGATTTCAATGGAGCTTCTGGAAAAATACGTTGATGATTTAGTCCATCTTACATGTCTCTAGGCTCGATCATATTTTGTTGGAAACTACGGGATTAGCCAATCCTGCTCCACTTGCTTCTGTACTTTGGCTGGACGATCAATTGGAATCATCGATCAAGCTTGATTCAATTATTACAGTCAGTTCTTAGTTCTTGTTCCTTCACGGTTTGAGTTAGTTTCCCCAAGTTTACTTTGAAATACGTATTATAGTTTGGAAATGTTTGTGAATTACATGCTATAGTTCTTAAGTTTAAGAATGTGTCATATTTGATGTTTGATTGAAATTAAGATAGCCAATGAAGCTTAAGTTTCCCCTTGTTCTAAGGTTAAATTTATGTGTTGGCTTTCGTTTCTATGTTGTTATTTAATTCGATTTTGTCTGTCCATGTGTGAATGCATGGTGTAGTAAATACTTGAATGCTTCAAACTTTGTTTTAAATTCTTTTTCTAGTGATCTAAAGGTTTCACCCAATAATAACTCCTTATGTTCATTTGGATGAATACATGCAAGTAGGTCGTGGATGCTAAAAATCTTCATTTTCAATTGAATGAGCACCGTAGTTCATCATCCTTTCCGGAAGCATTTCATCAAATTGTGTTTGCGGTAATATTCTTATTCTTAGTTCTTTTATGGTCTCTGCAAGTTTGCAATCTACTATTAATTATGTCAAGCAACTGCTGGGATCTTCATTATTTTTCATTTTTCATTCCATTATTACTTAGTATTTTTGTTTGTTTTATTTCTGTCTCTCTTGCTATATGGTTTGTTTTATTTCTCTCTTTTGCTATATGGTTTGTTTTATTTCTCTCTTTTGCTATATGGTTTTCTCAATAATTGTCCAATGTGCACGCCTAAGAAGTTGTGAATCTGTTATCCATCATAGGATACTATTATTCTTAACAAGGTCGACCTGGTCTCTTCAGATCGTGGTGATGGTGCATTGGAGGACCTGGAGTATGAAATACGTAACATTAATTCTCTTGCCAAAATCATTCACTCTGTTCGGTGTCAAGTAGACCTGTCTCTCATACTAGACTGCAATTCCTATAATGCTGCTGTTAGTCATGAACTTAACTTTAACCCCCCAGCTCATTTTCTATTTTTGTATCTGTCCTCTTTATCTAATACTATTCAGTTTTTCCTCATTTAGAATACAGCTCATTTAGAAGCATTATTGAAAGAAAGTTGTTCTTTATCTACTCAAGATCTTCATGATACTGGTGTTCGAACCTTGTGCATTAGTGAACACGACAAAGTTGACCTTGATAAGGTAGTTTCATGTATTTCCGTTAAAGATTGTGTGGTTCCATTCAACTAGTTTCTAGTGATAGATCATCTATGCTGAATTGTTATGACATCCTGTCGTGAACCTGTAGGATAGGATCCTTCTTATTTTAAATTGCTTAGGCATTTAAGAATTTCACGACCTGGAGTGTAGCTACATCCATGCTGATTTATGTTTTAGCCAAAGATCCATTGAAGTAATAATATTCTGAACTACTAATATATCTTTCCATTGGCTTGCTGATCTATTTAACGAAGTATTTAACTTCCGAAGTGATTATATAAATCACTCATCTTCACTATGAGCATGATGATTGAAGTAGGCACAATTCGTACAAGCAATATAAGTTACTGCCTTGGAAATTCATGATATTTCTCGTTAATCTGCATTTCATATCCGATCTTCGTGATGGTGCTATTCTCATGCCTACCTTATTTTGCAATAGGTTCATTCTTGGCTTGAGGAGATACTTTGGGAGAAAAAAGGTGGCATGGATGTGTATCGTTGCAAAGGAGTTTTAAGCATAAAAAATTCTGATCAGCTACATACTTTGCAGGTAGATTATGTGCTTAATCCTATAGTTTTTGCTGTTGGAAAATCACTCCAAACAGGCTTCTTTTTTAACCATCGTCCTAATTTCCCATCCTTTGTTAATCCGATTTCCATGCATTCCTTTTGGGTTTTGAACCCAAATGAAAAGGTTGAGTTATTGCGATGATACTTCCTAACAAGAACACTCAAGAACAACACAGAAAACTCAAGAAGACTCAAATATAAAAACATATGGAAATATACTGTAATATATATTATAAGAGAAGTAGCAAGATAACCTTGCCTTCCAAGTGGGCTAGTCCAAAGGAAATCTCACAAAATTCCTCACTCTTTGCTCCTTATCTCATTCCCTTTATTTATAAGCCCTAACAATACCAACATTCTACTACTAATCCTACTATATCTCTAACTAGGGAGCTCTTTTTCATGTTAATGACTGATTTTGATTGGTGGCTGACAGGCAGTTCGGGAATTATACGAGATCGTTCCTACACGGCAATGGAACAATGGAGAAAGTCAGACGAACAAGATAGTGTTCATAGGTAAAAGACATACAAAAATATCCACGCCCATGAACTCTTACAATGTGTTTATTGTTGAAACTTACACATTGTCCATAATATGCAGGTCGTAATCTGAACGAGGATGTTCTCAGCAAAACCTTTAGAGAATGTGCTTCTATCTCCTAAATTTTGTTGCTTTACTATTTGTTCGACTACATAGGCAAACAAGGAAGAGCATATGCGTAGGTGAAATGGTTTTGTATGATTTCGAAGTCCTTTTTTTGTATGTTAACTTGGATAAGTGTTTCCTAAATTAACTGTCTTTCGGTCTTGTTAGAGGTGTTCTAGAAAGGTTTTTGATGGAAAGATTTGTGAACGAAGGTACCATTGGATGTTTATTTTTCTAAATGAAAGTTCTTTTGAAAGTTAACATTGC

Coding sequence (CDS)

ATGGAAGATGAAGATCCACCACTCGCTGTTGAGATTGGCGAAACAATTACAGCTGTCCAACAACATGAAGATGATGGTGTTTCTGTTGGCGTTACAGTTATCACTGGATATCTTGGAGCTGGAAAATCCACCTTGGTTAATTACGTATTGAACTCGCAACATGGCAAGAGAATTGCTGTTATACTGAACGAATTTGGGGAGGAAATTGGAATTGAGAGGGCAATGATAAATGAAGGTGACGGTGGGGCGTTGGTTGAGGAATGGGTCGAATTAGCAAATGGATGTATTTGTTGCACTGTTAAGCATAGCCTGGTTCAAGCCTTGGAGCAACTTGTGCAGAGAAAAGAAAGGTATTCTCTTGCTGTTATATTAGATTTCAATGGAGCTTCTGGAAAAATACGTTGA

Protein sequence

MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAVILDFNGASGKIR
Homology
[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match: Q9BRT8 (COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-26
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAV 122
           NEFGE   +E+++     GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K ++   +
Sbjct: 76  NEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-I 135

Query: 123 ILDFNG 129
           +L+  G
Sbjct: 136 LLETTG 139

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match: Q8IUF1 (COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.1e-26
Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V +  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPMETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAV 122
           NEFGE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K ++   +
Sbjct: 76  NEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDY-I 135

Query: 123 ILDFNG 129
           +L+  G
Sbjct: 136 LLETTG 139

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match: Q5JTY5 (COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-25
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAV 122
           NE GE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K ++   +
Sbjct: 76  NESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFD-DI 135

Query: 123 ILDFNG 129
           +L+  G
Sbjct: 136 LLETTG 139

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match: Q5RIA9 (COBW domain-containing protein 5 OS=Homo sapiens OX=9606 GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-25
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAV 122
           NE GE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K ++   +
Sbjct: 76  NESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFD-DI 135

Query: 123 ILDFNG 129
           +L+  G
Sbjct: 136 LLETTG 139

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match: Q4V339 (COBW domain-containing protein 6 OS=Homo sapiens OX=9606 GN=CBWD6 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.5e-25
Identity = 58/126 (46.03%), Postives = 86/126 (68.25%), Query Frame = 0 

Query: 3   DEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVIL 62
           +ED P  V I  T +  ++    G  + VT+ITGYLGAGK+TL+NY+L  QH KR+AVIL
Sbjct: 16  EEDCPELVPIETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVIL 75

Query: 63  NEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAV 122
           NE GE   +E+++     GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K ++   +
Sbjct: 76  NESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFD-DI 135

Query: 123 ILDFNG 129
           +L+  G
Sbjct: 136 LLETTG 139

[Close]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match: XP_031742495.1 (COBW domain-containing protein 1-like [Cucumis sativus] >XP_031742496.1 COBW domain-containing protein 1-like [Cucumis sativus] >KGN47644.1 hypothetical protein Csa_018976 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 4.34e-73
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSL 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER   
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD- 120

Query: 121 AVILDFNG 128
            ++L+  G
Sbjct: 121 HILLETTG 127

[Close]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match: XP_031742511.1 (COBW domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 231 bits (588), Expect = 1.74e-72
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKST++NYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTVINYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSL 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER   
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD- 120

Query: 121 AVILDFNG 128
            ++L+  G
Sbjct: 121 HILLETTG 127

[Close]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match: KAG7029568.1 (COBW domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223 bits (567), Expect = 2.45e-70
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match: XP_016899920.1 (PREDICTED: COBW domain-containing protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 222 bits (566), Expect = 1.59e-69
Identity = 114/129 (88.37%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match: XP_023546079.1 (COBW domain-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223 bits (567), Expect = 2.57e-69
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match: A0A0A0KFM6 (CobW C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366420 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 2.10e-73
Identity = 119/128 (92.97%), Postives = 122/128 (95.31%), Query Frame = 0 

Query: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60
           MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV
Sbjct: 1   MEDEDPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSL 120
           ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER   
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD- 120

Query: 121 AVILDFNG 128
            ++L+  G
Sbjct: 121 HILLETTG 127

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match: A0A1S4DW33 (COBW domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488574 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 7.71e-70
Identity = 114/129 (88.37%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match: A0A6J1K8W5 (COBW domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492164 PE=3 SV=1)

HSP 1 Score: 223 bits (567), Expect = 1.25e-69
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match: A0A6J1HE98 (COBW domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462688 PE=3 SV=1)

HSP 1 Score: 223 bits (567), Expect = 1.25e-69
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGETITA ++HEDDGVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETITAAERHEDDGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match: A0A1S4DVA6 (COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488574 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 1.81e-69
Identity = 114/129 (88.37%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MEDE-DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIA 60
           MEDE DPPLAVEIGET+TA QQHED GVSVGVTVITGYLGAGKSTLVNY+LNSQHGKRIA
Sbjct: 1   MEDEEDPPLAVEIGETVTATQQHEDGGVSVGVTVITGYLGAGKSTLVNYILNSQHGKRIA 60

Query: 61  VILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYS 120
           VILNEFGEEIG+ERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER  
Sbjct: 61  VILNEFGEEIGVERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLD 120

Query: 121 LAVILDFNG 128
             ++L+  G
Sbjct: 121 -HILLETTG 128

[Close]
BLAST of Cucsat.G4275.T20 vs. TAIR 10
Match: AT1G26520.1 (Cobalamin biosynthesis CobW-like protein )

HSP 1 Score: 184.1 bits (466), Expect = 7.3e-47
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0 

Query: 2   EDEDPPLAVEIGETITAVQQH-EDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 61
           +DE+PP+AV+I   ++  + H   D VSVGV+VITGYLGAGKSTLVNY+LN +HGKRIAV
Sbjct: 14  DDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKRIAV 73

Query: 62  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 118
           ILNEFGEEIG+ERAMINEG+ GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 74  ILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

[Close]
BLAST of Cucsat.G4275.T20 vs. TAIR 10
Match: AT1G15730.1 (Cobalamin biosynthesis CobW-like protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 0 

Query: 5   DPPLAVEIGETITAVQQHEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNE 64
           D  LAV   E I  V         +  T+ITG+LG+GK+TL+N++L   HGKRIAVI NE
Sbjct: 68  DSSLAVVDDEDIFDVASEILPDNRIPATIITGFLGSGKTTLLNHILTGDHGKRIAVIENE 127

Query: 65  FGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERYSLAVIL 124
           FG E+ I+ +++     GA  E+ + L NGC+CCTV+  LV+ + ++VQ K+     +++
Sbjct: 128 FG-EVDIDGSLVAAQTAGA--EDIMMLNNGCLCCTVRGDLVRMISEMVQTKKGRFDHIVI 187

Query: 125 DFNG 129
           +  G
Sbjct: 188 ETTG 188

[Close]
BLAST of Cucsat.G4275.T20 vs. TAIR 10
Match: AT1G80480.1 (plastid transcriptionally active 17 )

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 0 

Query: 29  VGVTVITGYLGAGKSTLVNYVLNSQHGKRIAVILNEFGEEIGIERAMINEGDGGALVEEW 88
           +  T+ITG+LG+GK+TL+N++L   HGKRIAVI NEFG E+ I+ +++     GA  E+ 
Sbjct: 89  IPATIITGFLGSGKTTLLNHILTRDHGKRIAVIENEFG-EVDIDGSLVASKSIGA--EDI 148

Query: 89  VELANGCICCTVKHSLVQALEQLVQRKERYSLAVILDFNG 129
           V L NGC+CCTV+  LV+ + +LV  K+     ++++  G
Sbjct: 149 VMLNNGCLCCTVRGDLVRMIGELVNTKKGKFDHIVIETTG 185

The following BLAST results are available for this feature:
BLAST of Cucsat.G4275.T20 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9BRT81.8e-2647.62COBW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CBWD1 PE=1 SV=1[more]
Q8IUF19.1e-2646.03COBW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=CBWD2 PE=2 SV=1[more]
Q5JTY54.5e-2546.03COBW domain-containing protein 3 OS=Homo sapiens OX=9606 GN=CBWD3 PE=1 SV=1[more]
Q5RIA94.5e-2546.03COBW domain-containing protein 5 OS=Homo sapiens OX=9606 GN=CBWD5 PE=2 SV=1[more]
Q4V3394.5e-2546.03COBW domain-containing protein 6 OS=Homo sapiens OX=9606 GN=CBWD6 PE=3 SV=1[more]
BLAST of Cucsat.G4275.T20 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031742495.14.34e-7392.97COBW domain-containing protein 1-like [Cucumis sativus] >XP_031742496.1 COBW dom... [more]
XP_031742511.11.74e-7291.41COBW domain-containing protein 1 [Cucumis sativus][more]
KAG7029568.12.45e-7088.37COBW domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_016899920.11.59e-6988.37PREDICTED: COBW domain-containing protein 1 isoform X2 [Cucumis melo][more]
XP_023546079.12.57e-6988.37COBW domain-containing protein 1 [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G4275.T20 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFM62.10e-7392.97CobW C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G36... [more]
A0A1S4DW337.71e-7088.37COBW domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488... [more]
A0A6J1K8W51.25e-6988.37COBW domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492164 PE=... [more]
A0A6J1HE981.25e-6988.37COBW domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462688 P... [more]
A0A1S4DVA61.81e-6988.37COBW domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488... [more]
BLAST of Cucsat.G4275.T20 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26520.17.3e-4776.92Cobalamin biosynthesis CobW-like protein [more]
AT1G15730.14.2e-1840.32Cobalamin biosynthesis CobW-like protein [more]
AT1G80480.12.7e-1744.00plastid transcriptionally active 17 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003495CobW/HypB/UreG, nucleotide-binding domainPFAMPF02492cobWcoord: 31..123
e-value: 5.7E-27
score: 94.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 28..131
e-value: 4.4E-32
score: 113.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..120
NoneNo IPR availablePANTHERPTHR13748:SF31COBW DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 20..120
NoneNo IPR availablePANTHERPTHR13748COBW-RELATEDcoord: 20..120

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G4275Cucsat.G4275gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T20.E1Cucsat.G4275.T20.E1exon
Cucsat.G4275.T20.E2Cucsat.G4275.T20.E2exon
Cucsat.G4275.T20.E3Cucsat.G4275.T20.E3exon
Cucsat.G4275.T20.E4Cucsat.G4275.T20.E4exon
Cucsat.G4275.T20.E5Cucsat.G4275.T20.E5exon
Cucsat.G4275.T20.E6Cucsat.G4275.T20.E6exon
Cucsat.G4275.T20.E7Cucsat.G4275.T20.E7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T20.C2Cucsat.G4275.T20.C2CDS
Cucsat.G4275.T20.C1Cucsat.G4275.T20.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G4275.T20Cucsat.G4275.T20-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm