Cucsat.G3545.T1 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G3545.T1
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1047: 632034 .. 633150 (-)
RNA-Seq ExpressionCucsat.G3545.T1
SyntenyCucsat.G3545.T1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAAAATTCCAATCTGCAACAGAGTATTTATCCTTTCAAACCAATACAGATTCTAATATTCTCACTCAACACAATAACTTATTCAAACAAAAACCCACTCTCCCTCTTCCAAATTATAAATATTGTGTGTGTGTGTTCTTTCCATTCATAGCCAAATATAGAGAAGGAAGACTTCCTCTTTCCCTTTCAACATTCTTCTTCTTTAAGACATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGTCGATCCTTCTCGTGCTGGTTTTATGTATTTAATTATCGGTTCCATTCTTTGTGTCTGTTTCTTTGATGTTCTTTTCTAATTTAGCAATGTAATGGCAGGCGAATGAGCTCTTCGGTTGCATCTGAGCAACTTAAGGCACAAACAACTGCATCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACAGGCGGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGTGCAAGAACAAAAGTTCCACCTTTATCCATCTTATCCATGTTACTAAATAACACCTACTGCAAAAACTATTCTAAACTACTTTTCTCTCTCTAATCTGTCACTTCTATCAACTTAAAGTCTCATCTGAATCCTCTAAAGTTCAATGGTGTTGATTTCGACCGATGAAAGAAGGGAATCCGAATCTCATCAAGTTTATCAAAGAAAGCAAATCGCCAGATCATAGTAGTTGCAACAAGTCAAGAATGATGAGTTGGCCTACACAAATTAGTAAATACGTACAATTATGGACGAACATCTCAATAGATATTTATTCTATGATTTCTTTTATTAAATGTTTATTACTTTTCAGAAGGGACCATCCCAATGACATCCTTATCACTCGAGTTCCTTCTAATGAGAAAAGAGGGAAAGAGATAGCATTTCTTTCTTTTGATAAGGGACCATCTTACTATGCTAAAGAAAAAAAATGAGAGACCATCGTAGCGACATTTCATAT

Coding sequence (CDS)

ATGAAAGAAGGGAATCCGAATCTCATCAAGTTTATCAAAGAAAGCAAATCGCCAGATCATAGTAGTTGCAACAAGTCAAGAATGATGAGTTGGCCTACACAAATTAGTAAATACGTACAATTATGGACGAACATCTCAATAGATATTTATTCTATGATTTCTTTTATTAAATGTTTATTACTTTTCAGAAGGGACCATCCCAATGACATCCTTATCACTCGAGTTCCTTCTAATGAGAAAAGAGGGAAAGAGATAGCATTTCTTTCTTTTGATAAGGGACCATCTTACTATGCTAAAGAAAAAAAATGA

Protein sequence

MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLLLFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK
Homology
[Close]
BLAST of Cucsat.G3545.T1 vs. NCBI nr
Match: KGN45442.1 (hypothetical protein Csa_016897 [Cucumis sativus])

HSP 1 Score: 208 bits (529), Expect = 1.04e-67
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL 60
           MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL
Sbjct: 1   MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL 60

Query: 61  LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK 102
           LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK
Sbjct: 61  LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK 102

[Close]
BLAST of Cucsat.G3545.T1 vs. ExPASy TrEMBL
Match: A0A0A0KAN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448040 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 5.03e-68
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL 60
           MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL
Sbjct: 1   MKEGNPNLIKFIKESKSPDHSSCNKSRMMSWPTQISKYVQLWTNISIDIYSMISFIKCLL 60

Query: 61  LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK 102
           LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK
Sbjct: 61  LFRRDHPNDILITRVPSNEKRGKEIAFLSFDKGPSYYAKEKK 102

The following BLAST results are available for this feature:
BLAST of Cucsat.G3545.T1 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G3545.T1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45442.11.04e-67100.00hypothetical protein Csa_016897 [Cucumis sativus][more]
BLAST of Cucsat.G3545.T1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN25.03e-68100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448040 PE=4 SV=1[more]
BLAST of Cucsat.G3545.T1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G3545Cucsat.G3545gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G3545.T1.E1Cucsat.G3545.T1.E1exon
Cucsat.G3545.T1.E2Cucsat.G3545.T1.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G3545.T1.C1Cucsat.G3545.T1.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G3545.T1Cucsat.G3545.T1-proteinpolypeptide