Cucsat.G21224.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G21224.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Protein YIP
Location	ctg910: 3798305 .. 3802206 (-)
RNA-Seq Expression	Cucsat.G21224.T2
Synteny	Cucsat.G21224.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTGAAGAAGAAGAATCGAACGATGAAAAAACTGCAGATTGAAGAAGGAAGAAAGTATGCAATTATGGTTAAAGTTGTAATTTCGTTGAAATAATCAGAAGACAACAATGAACCAAACTCAATGGTCCGACCCGGTCTAGAGAAATGGGTCTTTTTAGCTTACTTACGTAACGACGACGTTTAGGCGTAACCCCAACATGGAAGAGTGATTAACAGAATTTCTTCTTCTTCTTCTAAGAACATAAATCACCAAACTCCAAATTTCTGTTCCTCTTCTTTAGATCTGATCTTCTTCTTCATTCTTCGCTTCAATTCGATCCATTTTTCTCATCGTTTTCCCGAGAAAATTCCCTTCCCGGGAAATGTCGCACAGCGATACAATTCCTCTTCATCAATCGTCCCAATCGGACATCGACGAGATCGAAAATCTCATCAACGCCAGCGTTCAAACCGGCCCTTCAACTGTTCTTCCAGCTCGACCCCCAAGTCCTCCCAGGGCTTCCATTCCTGTTTCTTCTTCCCCCTTTTTACAGTCCAATCTACCCCCACTTCCCCCCAAATCCACCATTCAGAAGCCGCCGACTGTCTTTCCTACTCCACCACCGTTGCCCGTTTCCGGTAATGGGAGGCCCGATTTATCGGCTTCTGGATTTGGGTCACCTCCCAACACTCTCACCGAACCGGTATGGGATACGGTCAAGAGGGATCTGTCCCGGATCGTCAGCAATTTGAAGCTTGTGGTTTTTCCTAACCCTTTCCGTGAGGACCCTGGAAAGGCTTTGAGGGATTGGGATCTGTGGGGGCCTTTCTTTTTCATTGTGTTCCTTGGTCTTACTCTTTCGTGGTCTGCATCGGTCAAGAAGGTTAGCCTTGTAAAAATTTGAGTTGGTTGAAATCGTTAATTGCTTTCCTTGGGCTTTGTTTGATTTTAGTTCACATGCAAGTCTGAGTTTGCATCAAGATTTTTAGTTGTTTATGATGTGATTTTTCTTATATTTGCCTGTTTTGGGCTTTTGATGCTTTGGTTTGGCTTGGGAGCTATCTGCAGTTATTAAGATTTGGATTTGAGTTGAATTCACTGTTGAAAGTTAAAAATATAGCTTAGTATTTTATATCTCAGGGAAGGCAGAAGCGACTGTATTGGCCAGTTTGTTTCATTGGATTTTAATAGGCACCATGATTCTAATCAGTTGGAATACTTGGGAAATTATAGGAACACTTGCAAGCTTCTATCAATGGCTGAAAGCTAATTGAATAGATGCATAAGTGTTGTAATTAGTATGGTGGAGTGCATAAATGTAGATACAATTTTTTTAAAATGGTTTATGGGATATAAACCATTATCTATGTGCTAGATCACTGCATATTCAGGATATTGAGACGTGCATGGATAAAACCTCAAGTTCTAAATTTCATTAGGTCTTTAATCAGCATATATTTCGAAGGGGAAATGTAGATATGGACTGCCAAAATTTCTGTCTCATAAATTAATCTGAAGGCAACCATTTTGCTACTTGATATAAAAGACAAATGTTGTTTACTGAACCCGCTATTAGGAATATCAGCTCCTTTTTAGGCAGGGCGCGTTGCTTGCTAGGGTATGTACTTTTATGACTATGGATACTAGACTAAGGGGATATTACTATACTTTAGTCATACCTTCACCCAAGAAAAATTTAGAATTCATGCACTTATTGTTGTTATTATTGTTATTATTATTGTTATTAGTATTAGATAAAGTCTTTCAAACGAAACACTACCTTTATTTAATCACCGTCATTCATTAAATAAAGGCTTGATTTTCTTTTGGTATTCTACTGACTATATCAATTGATTTTCTTTTCAGTCTGAGGTTTTTGCTGTTGCATTTGCACTACTTGCTGCTGGTGCAGTGATTCTGACCTTGAATGTGCTTCTCCTGGTAACTAAATCTATCTTTAACTCATTCCCAGCTTCTTTCTCACTCTTTTATTCAAGAACGTGTTTTTACTGTCACGTTTGTTTTTATCCATTAGAAAATGGAGTTGATACTTATTTAAAATTGTGCTGTGCTGCCTTCTTTATTGCATTCCTATTCATTGTTAGGACTTCGGAGTATGAGGGAACGTTGGGGGGTAATTTTGAAAGATTTAAAATCACTTTTCTCATATTCAGAATTATTCTGAAAGATGCTTTTAATCATTCTAAATGTATTTATGTTTGATTAGTCTACTTTTAAATGCATTTTATTTTTAAATGCATTTTATTTTGAAATGGTTAAAATCACCTTTGTCATGTTCAAAATTGTTTTGGAAGAAGTCCTTCAAAATCAATTTCATGTTTGATTTTTTACTTTTAATAGCGATTTCCATACCATCAAAATTGATTTTGAATGTTGAAAAACATCTCTCAAAGTGATTTAACATAGGTAATTCTTAACTGTTTCAAAATCACTTCCACACATTTCCTAAGAGTTAGATCTTGTGTTAGTCTGGTATTTTTCTGTAAAAATGATGGTCGAAGCAGTTATGTTTTTTTGATTAAAATTAAATTGACATAAACCACACTGTAACAGAGAATTGGACTGAGCTCTTGACCAGAGCCATTATTACGATAGATGTTTTGTAGTTCTGAAAATGAACTTCAGAGGAATCGGAGCTCTCAGGATAAGTTCTCTTGGCTCAAGATGATTTCCAACCATAATGAAAATACCTGTCAGGTTAATACGGTAAAAGATGTCCTATAGCTCTACGAAAAAGCCTTAGCCTAACGTGAATACTTAATATGCTTTCTAGGAATCAGAGCTCTCAGGATAAGTTCAAAGAGTGTTTGGATATGCGTAGGTGAGATGTGCACTTCTTTCTTAATTCCAAACATTTTCTAATAATTTAGAGTTGAATTAAGGGGAAAAAACTTAAATAAACATACAGGTTCATCTCCTTTGTTTGAGTTTCTCATCCCCAGTGCTCTCTCCAATAGATATGGAGAAATATGTAAAGGAAACTGGAAACCAAAGGGGATGCATTGGAGGGCTATAAGTCTAATGATACGGAAACTTATTTAGAGATGATGAGTTTCAATTTTAGGTTTTCGTGACGTAGCATTGTGTGGTCGTGTGGTCTATTTGTTCTCAAAAGACTCATAACAAGTGAAATTTGTTTGCCTCTAATTTTTTTCTCAATAAACATTTCTTTGACATAGTGAAAAGTTATAGATGAAACCAGTATTATTGAGAGAATCAGAACTTAGGAATCCCAAAGTTAACTATCGATACTATAAAAGTTATTCCCATTTCACCGAACCCTCTATATACAACTAAAGCGCTTTTTCAAAAGAAAATGAACAAAAATCCTTTCAATAGAATTAGTAACCGACGGAGCATAATAGAATAAATATAAGGCCCACCACTTCCGGAGACTCCCAATGAGATAGAGGACAATGAAAACTCAGAGTGGGGGGACGACTTAGAAAGAGACAAAGTAGAGGCAAGTGCGTGCACCTCTTTTAAATGTATACATGGAAAAATAAGCACTCCCGCGCACCTTTTACTCAGATGACGAGTGCAAGCACTCTCATTTTTTATCTTCCTTTGGATAAATACAATCCCCGTCAAAAAGATGTAGCTATTGTTAGCGAACCCATTCTTCATTTGCTGTTAAATTTTCTCTGAAGGAAAAAAAAAAATCCAATGAGCTATATTCTCTTACCAAACATGTTTTACTAATACCACAATTTCTTGAACAACTATTAAAATTTTAGGAAAGTAGTGTATGGATTGTGATTCCATCCAGTTGTCCTTCCAATATATACATAATGTTGCTAATTAGTGAACATTTATCAAAGATTGATCCAAGCTTTGAAATGGTACTCCTTGGGCTTGGCGAGCTCTTACTATAGATGTAGATGCTAGTAGTTAACCG

Coding sequence (CDS)

ATGTCGCACAGCGATACAATTCCTCTTCATCAATCGTCCCAATCGGACATCGACGAGATCGAAAATCTCATCAACGCCAGCGTTCAAACCGGCCCTTCAACTGTTCTTCCAGCTCGACCCCCAAGTCCTCCCAGGGCTTCCATTCCTGTTTCTTCTTCCCCCTTTTTACAGTCCAATCTACCCCCACTTCCCCCCAAATCCACCATTCAGAAGCCGCCGACTGTCTTTCCTACTCCACCACCGTTGCCCGTTTCCGGTAATGGGAGGCCCGATTTATCGGCTTCTGGATTTGGGTCACCTCCCAACACTCTCACCGAACCGGTATGGGATACGGTCAAGAGGGATCTGTCCCGGATCGTCAGCAATTTGAAGCTTGTGGTTTTTCCTAACCCTTTCCGTGAGGACCCTGGAAAGGCTTTGAGGGATTGGGATCTGTGGGGGCCTTTCTTTTTCATTGTGTTCCTTGGTCTTACTCTTTCGTGGTCTGCATCGGTCAAGAAGTCTGAGGTTTTTGCTGTTGCATTTGCACTACTTGCTGCTGGTGCAGTGATTCTGACCTTGAATGTGCTTCTCCTGGTAACTAAATCTATCTTTAACTCATTCCCAGCTTCTTTCTCACTCTTTTATTCAAGAACGTGTTTTTACTGTCACGTTTGTTTTTATCCATTAGAAAATGGAGTTGATACTTATTTAAAATTGTGCTGTGCTGCCTTCTTTATTGCATTCCTATTCATTGTTAGGACTTCGGAGTATGAGGGAACGTTGGGGGGTAATTTTGAAAGATTTAAAATCACTTTTCTCATATTCAGAATTATTCTGAAAGATGCTTTTAATCATTCTAAATGTATTTATGTTTGA

Protein sequence

MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNLPPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVTKSIFNSFPASFSLFYSRTCFYCHVCFYPLENGVDTYLKLCCAAFFIAFLFIVRTSEYEGTLGGNFERFKITFLIFRIILKDAFNHSKCIYV

Homology

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BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot
Match: Q93VH1 (Protein YIP4b OS=Arabidopsis thaliana OX=3702 GN=YIP4B PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.2e-81
Identity = 170/228 (74.56%), Postives = 184/228 (80.70%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSH+DTIPL+QSSQSDIDEIEN++N S Q+GP TVLPARPPSP R SIPVSSSPF+QSNL
Sbjct: 1   MSHNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNL 60

Query: 61  PPLPPKSTIQKPPTV-FPTPPPLPVSGN-GRPDLSASGFGSPPNTLTEPVWDTVKRDLSR 120
           PPLPP S+      +  P PPPLP +GN G   +  SGFGSPPNTLTEPVWDTVKRDLSR
Sbjct: 61  PPLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSR 120

Query: 121 IVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180
           IVSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL
Sbjct: 121 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 180

Query: 181 AAGAVILTLNVLLLVTKSIFNSFPASFSLFYSRTCFYCHVCFYPLENG 227
           AAGAVILTLNVLLL    IF  F +   L Y         C +PL+ G
Sbjct: 181 AAGAVILTLNVLLLGGHIIF--FQSLSLLGY---------CLFPLDVG 217

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BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot
Match: O64614 (Protein YIP4a OS=Arabidopsis thaliana OX=3702 GN=YIP4A PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.6e-78
Identity = 170/230 (73.91%), Postives = 178/230 (77.39%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPV----SSSPFL 60
           MS  DT+PLH SSQSDIDEIENLIN SVQ+GP TVL ARPPSP R SIPV    SSSPF+
Sbjct: 1   MSQGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFM 60

Query: 61  QSNLPPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDL 120
           QSNLPPL P S+ QK  T  P PPPLP   N      AS FGSPPNTLTEPVWDTVKRDL
Sbjct: 61  QSNLPPLHPSSSAQK-VTHVPVPPPLPAVSNSSNFQGASAFGSPPNTLTEPVWDTVKRDL 120

Query: 121 SRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180
           SRIVSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA
Sbjct: 121 SRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 180

Query: 181 LLAAGAVILTLNVLLLVTKSIFNSFPASFSLFYSRTCFYCHVCFYPLENG 227
           LLAAGAVILTLNVLLL    IF  F +   L Y         C +PL+ G
Sbjct: 181 LLAAGAVILTLNVLLLGGHIIF--FQSLSLLGY---------CLFPLDVG 218

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BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot
Match: Q54RZ2 (Protein YIPF6 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf6 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-10
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 101 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLS 160
           PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct: 7   PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 66

Query: 161 WSASVKKSEVFAVAFALLAAGAVILTLNVLLL 193
            SA  +K+  F + F ++  GA I+T+N  LL
Sbjct: 67  ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLL 95

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BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot
Match: Q28CH8 (Protein YIPF6 OS=Xenopus tropicalis OX=8364 GN=yipf6 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.7e-08
Identity = 44/123 (35.77%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 82  LPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALR 141
           +PV G     ++++      +TL EPV DT+ RDL  + +    V++P    +     LR
Sbjct: 28  IPVEGEITVPMASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLR 87

Query: 142 DWDLWGPFFFIVFLGLTLSWSASVKKSE---VFAVAFALLAAGAVILTLNVLLL-VTKSI 201
           DWDLWGP    V L L L    +  K +    FA  F ++  GAV++TLN  LL  T S 
Sbjct: 88  DWDLWGPLVLCVSLALMLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLLGGTISF 146

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BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot
Match: Q6IQ85 (Protein YIPF6 OS=Danio rerio OX=7955 GN=yipf6 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.1e-08
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 82  LPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPFREDPGKALR 141
           +PV G+    + +    +  +TL EPV DT+ RDL  +      V++P    +     LR
Sbjct: 35  IPVEGDISVPVGSQNADNDFSTLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLR 94

Query: 142 DWDLWGPFFFIVFLGLTLSWSASVKKSE---VFAVAFALLAAGAVILTLNVLLL-VTKSI 201
           DWDLWGP    V L L L   ++  + +    FA  F ++  G+VI+TLN  LL  T S 
Sbjct: 95  DWDLWGPLLLCVTLALMLQGGSADSEEDGRPQFAEVFVIIWFGSVIITLNSKLLGGTISF 153

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BLAST of Cucsat.G21224.T2 vs. NCBI nr
Match: XP_004143629.1 (protein YIPF6 homolog [Cucumis sativus] >KGN50415.1 hypothetical protein Csa_000333 [Cucumis sativus])

HSP 1 Score: 369 bits (948), Expect = 9.15e-126
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. NCBI nr
Match: KAA0055167.1 (protein YIPF6-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 367 bits (943), Expect = 8.01e-125
Identity = 192/196 (97.96%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKST QKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTNQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLLVTKS 196
           GAVILTLNVLLL  +S
Sbjct: 181 GAVILTLNVLLLRNQS 196

[Close]

BLAST of Cucsat.G21224.T2 vs. NCBI nr
Match: XP_008467227.1 (PREDICTED: protein YIPF6 homolog [Cucumis melo] >TYK00296.1 protein YIPF6-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 367 bits (941), Expect = 1.06e-124
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKST QKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTNQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. NCBI nr
Match: XP_022159810.1 (protein YIPF6 homolog [Momordica charantia])

HSP 1 Score: 356 bits (913), Expect = 1.92e-120
Identity = 184/192 (95.83%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQ+GPSTVLPARPPSPPRASIPVSSSPF+QSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQSGPSTVLPARPPSPPRASIPVSSSPFIQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKSTIQKPPTV P PPPLPVSGNGRPD+S++GFGS PNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTIQKPPTVSPAPPPLPVSGNGRPDISSTGFGSAPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. NCBI nr
Match: XP_038876122.1 (protein YIPF6 homolog [Benincasa hispida])

HSP 1 Score: 353 bits (907), Expect = 1.57e-119
Identity = 184/192 (95.83%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQ+GPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQSGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKS+ QKPPTVFP PPPLPVS NGR D+SASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSSNQKPPTVFPAPPPLPVSSNGRSDISASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGL LSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLALSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL
Match: A0A0A0KL60 (Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_5G173430 PE=3 SV=1)

HSP 1 Score: 369 bits (948), Expect = 4.43e-126
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL
Match: A0A5A7UKR4 (Protein YIPF6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00990 PE=4 SV=1)

HSP 1 Score: 367 bits (943), Expect = 3.88e-125
Identity = 192/196 (97.96%), Postives = 193/196 (98.47%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKST QKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTNQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLLVTKS 196
           GAVILTLNVLLL  +S
Sbjct: 181 GAVILTLNVLLLRNQS 196

[Close]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL
Match: A0A5D3BPX9 (Protein YIP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00400 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 5.14e-125
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKST QKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTNQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL
Match: A0A1S3CT87 (Protein YIP OS=Cucumis melo OX=3656 GN=LOC103504629 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 5.14e-125
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKST QKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTNQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

[Close]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL
Match: A0A6J1DZT8 (Protein YIP OS=Momordica charantia OX=3673 GN=LOC111026118 PE=3 SV=1)

HSP 1 Score: 356 bits (913), Expect = 9.28e-121
Identity = 184/192 (95.83%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPRASIPVSSSPFLQSNL 60
           MSHSDTIPLHQSSQSDIDEIENLINASVQ+GPSTVLPARPPSPPRASIPVSSSPF+QSNL
Sbjct: 1   MSHSDTIPLHQSSQSDIDEIENLINASVQSGPSTVLPARPPSPPRASIPVSSSPFIQSNL 60

Query: 61  PPLPPKSTIQKPPTVFPTPPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRIV 120
           PPLPPKSTIQKPPTV P PPPLPVSGNGRPD+S++GFGS PNTLTEPVWDTVKRDLSRIV
Sbjct: 61  PPLPPKSTIQKPPTVSPAPPPLPVSGNGRPDISSTGFGSAPNTLTEPVWDTVKRDLSRIV 120

Query: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180
           SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA
Sbjct: 121 SNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 180

Query: 181 GAVILTLNVLLL 192
           GAVILTLNVLLL
Sbjct: 181 GAVILTLNVLLL 192

The following BLAST results are available for this feature:

BLAST of Cucsat.G21224.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VH1	3.2e-81	74.56	Protein YIP4b OS=Arabidopsis thaliana OX=3702 GN=YIP4B PE=1 SV=1	[more]
O64614	2.6e-78	73.91	Protein YIP4a OS=Arabidopsis thaliana OX=3702 GN=YIP4A PE=1 SV=1	[more]
Q54RZ2	1.8e-10	42.39	Protein YIPF6 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf6 PE=3 SV=2	[more]
Q28CH8	3.7e-08	35.77	Protein YIPF6 OS=Xenopus tropicalis OX=8364 GN=yipf6 PE=2 SV=1	[more]
Q6IQ85	8.1e-08	34.96	Protein YIPF6 OS=Danio rerio OX=7955 GN=yipf6 PE=2 SV=1	[more]

BLAST of Cucsat.G21224.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143629.1	9.15e-126	100.00	protein YIPF6 homolog [Cucumis sativus] >KGN50415.1 hypothetical protein Csa_000...	[more]
KAA0055167.1	8.01e-125	97.96	protein YIPF6-like protein [Cucumis melo var. makuwa]	[more]
XP_008467227.1	1.06e-124	99.48	PREDICTED: protein YIPF6 homolog [Cucumis melo] >TYK00296.1 protein YIPF6-like p...	[more]
XP_022159810.1	1.92e-120	95.83	protein YIPF6 homolog [Momordica charantia]	[more]
XP_038876122.1	1.57e-119	95.83	protein YIPF6 homolog [Benincasa hispida]	[more]

BLAST of Cucsat.G21224.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL60	4.43e-126	100.00	Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_5G173430 PE=3 SV=1	[more]
A0A5A7UKR4	3.88e-125	97.96	Protein YIPF6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3BPX9	5.14e-125	99.48	Protein YIP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00400 P...	[more]
A0A1S3CT87	5.14e-125	99.48	Protein YIP OS=Cucumis melo OX=3656 GN=LOC103504629 PE=3 SV=1	[more]
A0A6J1DZT8	9.28e-121	95.83	Protein YIP OS=Momordica charantia OX=3673 GN=LOC111026118 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR21236	GOLGI MEMBRANE PROTEIN YIP1	coord: 1..199
None	No IPR available	PANTHER	PTHR21236:SF22	PROTEIN YIPF	coord: 1..199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G21224	Cucsat.G21224	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21224.T2.E1	Cucsat.G21224.T2.E1	exon
Cucsat.G21224.T2.E2	Cucsat.G21224.T2.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21224.T2.C2	Cucsat.G21224.T2.C2	CDS
Cucsat.G21224.T2.C1	Cucsat.G21224.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21224.T2	Cucsat.G21224.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005802	trans-Golgi network