Cucsat.G16794.T33 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T33
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236491 .. 1241149 (-)
RNA-Seq Expression	Cucsat.G16794.T33
Synteny	Cucsat.G16794.T33

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATTTTGTAATTTG

Coding sequence (CDS)

ATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGA

Protein sequence

MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKIRHLFFWKQWNISNSFTSKSRC

Homology

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-12
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 23 MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 78
          MME KR +CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGK
Sbjct: 10 MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-09
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 21 ETMMEQKRTLCSVDESALTSLTPKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGK 78
          E MME KR + S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGK
Sbjct: 9  EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGK 61

[Close]

BLAST of Cucsat.G16794.T33 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 150 bits (379), Expect = 5.15e-44
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERIMALQQLVSPYGK
Sbjct: 61 LGERIMALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 149 bits (375), Expect = 2.09e-43
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERIMALQQLVSPYGK
Sbjct: 61 LGERIMALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 9.80e-42
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVM+VETMMEQKR+LCSVDESALTSLT KRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERIMALQQLVSPYGK
Sbjct: 61 LGERIMALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. NCBI nr
Match: XP_022158392.1 (transcription factor bHLH153-like isoform X1 [Momordica charantia])

HSP 1 Score: 142 bits (359), Expect = 5.63e-41
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERI+ALQQLVSPYGK
Sbjct: 61 LGERIVALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. NCBI nr
Match: XP_022956205.1 (transcription factor bHLH153-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 138 bits (348), Expect = 2.49e-39
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGER++ALQQLVSPYGK
Sbjct: 61 LGERVLALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 2.49e-44
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERIMALQQLVSPYGK
Sbjct: 61 LGERIMALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.01e-43
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERIMALQQLVSPYGK
Sbjct: 61 LGERIMALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL
Match: A0A6J1DX43 (transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024885 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 2.73e-41
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1  MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGERI+ALQQLVSPYGK
Sbjct: 61 LGERIVALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL
Match: A0A6J1ITA6 (transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479164 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 1.20e-39
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGER++ALQQLVSPYGK
Sbjct: 61 LGERVLALQQLVSPYGK 77

[Close]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL
Match: A0A6J1GX68 (transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111457969 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 1.20e-39
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
          MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1  MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61 LGERIMALQQLVSPYGK 77
          LGER++ALQQLVSPYGK
Sbjct: 61 LGERVLALQQLVSPYGK 77

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T33 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	2.5e-12	67.27	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	3.3e-09	62.07	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T33 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152130.1	5.15e-44	100.00	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	2.09e-43	98.70	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_038906434.1	9.80e-42	96.10	transcription factor bHLH153-like isoform X1 [Benincasa hispida]	[more]
XP_022158392.1	5.63e-41	93.51	transcription factor bHLH153-like isoform X1 [Momordica charantia]	[more]
XP_022956205.1	2.49e-39	90.91	transcription factor bHLH153-like isoform X3 [Cucurbita moschata]	[more]

BLAST of Cucsat.G16794.T33 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4	2.49e-44	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	1.01e-43	98.70	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1DX43	2.73e-41	93.51	transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1ITA6	1.20e-39	90.91	transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GX68	1.20e-39	90.91	transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 23..78
None	No IPR available	PANTHER	PTHR16223:SF249	TRANSCRIPTION FACTOR BHLH154	coord: 23..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T33.E1	Cucsat.G16794.T33.E1	exon
Cucsat.G16794.T33.E2	Cucsat.G16794.T33.E2	exon
Cucsat.G16794.T33.E3	Cucsat.G16794.T33.E3	exon
Cucsat.G16794.T33.E4	Cucsat.G16794.T33.E4	exon
Cucsat.G16794.T33.E5	Cucsat.G16794.T33.E5	exon
Cucsat.G16794.T33.E6	Cucsat.G16794.T33.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T33.C5	Cucsat.G16794.T33.C5	CDS
Cucsat.G16794.T33.C4	Cucsat.G16794.T33.C4	CDS
Cucsat.G16794.T33.C3	Cucsat.G16794.T33.C3	CDS
Cucsat.G16794.T33.C2	Cucsat.G16794.T33.C2	CDS
Cucsat.G16794.T33.C1	Cucsat.G16794.T33.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T33	Cucsat.G16794.T33-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding