Cucsat.G16794.T29 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T29
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236384 .. 1240470 (-)
RNA-Seq Expression	Cucsat.G16794.T29
Synteny	Cucsat.G16794.T29

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATTTTGTAATTTGGTTAGTGATTATGTAATTGTCAAAAATCACTTTTGATACATTTTAAAATCACTTTCTATCTGAATATTAATTTTTATATCATTGACTCTAGTTTTGATGATAAAAGG

Coding sequence (CDS)

ATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA

Protein sequence

MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN

Homology

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BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 6   MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 65
           MME KR +CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 66  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVAR 125
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E   +SLR+RGLCLVP+  T GVA+
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTVGVAQ 129

Query: 126 SNGADIWAPVKT-ISPKF 143
           SNGADIWAPVKT +SP F
Sbjct: 130 SNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 94/148 (63.51%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 4   ETMMEQKRTLCSVDESALTSLTPKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGKTD 63
           E MME KR + S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 64  TASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAG 123
           TASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +EVE   +SLRS+GLCLVP+  T+ 
Sbjct: 69  TASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEYTSE 128

Query: 124 VARSNGADIWAPVKTISPKFEKHISPFN 151
           VA++NGADIWAPVKT +     ++S  N
Sbjct: 129 VAQTNGADIWAPVKTPTSSHAFNLSSSN 149

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-22
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 27  KRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLS 86
           KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++VL 
Sbjct: 142 KRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLC 201

Query: 87  APYLQSTPT---VLLQEVEPC--SHSLRSRGLCLVPISCTAGVARSNGADIWAP 135
           +PYL +      V+  +V     +  LRSRGLCLVP+S T  V  SNGAD W+P
Sbjct: 202 SPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGADFWSP 255

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-21
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 27  KRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVL 86
           KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  L
Sbjct: 331 KRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSAL 390

Query: 87  SAPYLQSTPTVLLQEVEPCSH-------SLRSRGLCLVPISCTAGVARSNGADIWAP 135
           S PY++S  ++  Q+ +  +         LRSRGLCLVP+S T  V      D W P
Sbjct: 391 SNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYL-QSTPTVL 97
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY+ Q      
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 98  LQEV--------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 135
            Q++        E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Cucsat.G16794.T29 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 293 bits (749), Expect = 1.83e-99
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T29 vs. NCBI nr
Match: XP_008454046.1 (PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA0044549.1 transcription factor bHLH113-like isoform X2 [Cucumis melo var. makuwa] >TYK17032.1 transcription factor bHLH113-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 291 bits (745), Expect = 4.16e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T29 vs. NCBI nr
Match: XP_016901571.1 (PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo])

HSP 1 Score: 291 bits (745), Expect = 6.28e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 13  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 72

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 73  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 132

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 133 AGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]

BLAST of Cucsat.G16794.T29 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 291 bits (745), Expect = 7.46e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T29 vs. NCBI nr
Match: XP_008454043.1 (PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo])

HSP 1 Score: 291 bits (745), Expect = 3.63e-98
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 64  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 123

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 124 TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 183

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 184 AGVARSNGADIWAPVKTISPKFEKHISPFN 213

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 8.87e-100
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL
Match: A0A5D3CZQ3 (Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001780 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 2.01e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL
Match: A0A1S3BX75 (transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 2.01e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL
Match: A0A1S4E020 (transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 3.04e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 13  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 72

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 73  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 132

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 133 AGVARSNGADIWAPVKTISPKFEKHISPFN 162

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BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 291 bits (745), Expect = 3.61e-99
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150
           AGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T29 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	1.7e-44	69.57	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	1.1e-40	63.51	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q9LT67	1.4e-22	55.26	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	3.4e-21	49.57	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q94JL3	2.2e-20	53.77	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T29 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152130.1	1.83e-99	100.00	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454046.1	4.16e-99	99.33	PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA00445...	[more]
XP_016901571.1	6.28e-99	99.33	PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo]	[more]
XP_008454045.1	7.46e-99	99.33	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_008454043.1	3.63e-98	99.33	PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo]	[more]

BLAST of Cucsat.G16794.T29 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4	8.87e-100	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A5D3CZQ3	2.01e-99	99.33	Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BX75	2.01e-99	99.33	transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S4E020	3.04e-99	99.33	transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3BYX6	3.61e-99	99.33	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 36..83 e-value: 4.3E-4 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 28..77 score: 11.693202
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 25..94 e-value: 9.3E-9 score: 37.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 30..91
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 2..134
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 2..134
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 34..85 e-value: 4.88262E-23 score: 83.7699

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T29.E1	Cucsat.G16794.T29.E1	exon
Cucsat.G16794.T29.E2	Cucsat.G16794.T29.E2	exon
Cucsat.G16794.T29.E3	Cucsat.G16794.T29.E3	exon
Cucsat.G16794.T29.E4	Cucsat.G16794.T29.E4	exon
Cucsat.G16794.T29.E5	Cucsat.G16794.T29.E5	exon
Cucsat.G16794.T29.E6	Cucsat.G16794.T29.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T29.C5	Cucsat.G16794.T29.C5	CDS
Cucsat.G16794.T29.C4	Cucsat.G16794.T29.C4	CDS
Cucsat.G16794.T29.C3	Cucsat.G16794.T29.C3	CDS
Cucsat.G16794.T29.C2	Cucsat.G16794.T29.C2	CDS
Cucsat.G16794.T29.C1	Cucsat.G16794.T29.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T29	Cucsat.G16794.T29-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding