Cucsat.G16794.T27 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T27
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236554 .. 1241152 (-)
RNA-Seq Expression	Cucsat.G16794.T27
Synteny	Cucsat.G16794.T27

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATT

Coding sequence (CDS)

ATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGA

Protein sequence

MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV

Homology

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 23  MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 82
           MME KR +CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKV 101
           VLL+AM YI+FLHEQVKV
Sbjct: 70  VLLDAMHYIEFLHEQVKV 82

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-20
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 21  ETMMEQKRTLCSVDESALTSLTPKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGKTD 80
           E MME KR + S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 81  TASVLLEAMEYIQFLHEQVKV 101
           TASVLLE M+YIQFL EQVKV
Sbjct: 69  TASVLLEGMQYIQFLQEQVKV 84

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot
Match: Q9M0X8 (Transcription factor bHLH114 OS=Arabidopsis thaliana OX=3702 GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 53  SSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 101
           S K RK+KLG+RI ALQQLVSP+GKTDTASVL EA+EYI+FL EQV V
Sbjct: 171 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTV 218

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 44  KRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 101
           KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++V
Sbjct: 142 KRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQV 199

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-11
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 44  KRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQV 99
           KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV
Sbjct: 331 KRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQV 387

[Close]

BLAST of Cucsat.G16794.T27 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 191 bits (485), Expect = 4.00e-60
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 189 bits (481), Expect = 1.63e-59
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 185 bits (470), Expect = 7.70e-58
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVM+VETMMEQKR+LCSVDESALTSLT KRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. NCBI nr
Match: XP_022158392.1 (transcription factor bHLH153-like isoform X1 [Momordica charantia])

HSP 1 Score: 183 bits (465), Expect = 4.44e-57
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. NCBI nr
Match: XP_022956205.1 (transcription factor bHLH153-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 177 bits (450), Expect = 8.00e-55
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKV
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.94e-60
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 7.88e-60
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL
Match: A0A6J1DX43 (transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024885 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 2.15e-57
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL
Match: A0A6J1ITA6 (transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479164 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 3.88e-55
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKV
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKV 100

[Close]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL
Match: A0A6J1GX68 (transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111457969 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 3.88e-55
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 100
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKV
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKV 100

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T27 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	1.8e-23	73.08	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	7.3e-20	69.14	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q9M0X8	1.2e-11	77.08	Transcription factor bHLH114 OS=Arabidopsis thaliana OX=3702 GN=BHLH114 PE=2 SV=...	[more]
Q9LT67	6.2e-11	63.79	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	8.0e-11	63.16	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T27 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152130.1	4.00e-60	100.00	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	1.63e-59	99.00	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_038906434.1	7.70e-58	97.00	transcription factor bHLH153-like isoform X1 [Benincasa hispida]	[more]
XP_022158392.1	4.44e-57	95.00	transcription factor bHLH153-like isoform X1 [Momordica charantia]	[more]
XP_022956205.1	8.00e-55	92.00	transcription factor bHLH153-like isoform X3 [Cucurbita moschata]	[more]

BLAST of Cucsat.G16794.T27 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4	1.94e-60	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	7.88e-60	99.00	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1DX43	2.15e-57	95.00	transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1ITA6	3.88e-55	92.00	transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GX68	3.88e-55	92.00	transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..100 e-value: 4.3E-4 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 11.693202
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 39..100 e-value: 2.1E-8 score: 36.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 47..99
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 17..100
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 17..100
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 51..100 e-value: 7.99495E-21 score: 76.0659

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T27.E1	Cucsat.G16794.T27.E1	exon
Cucsat.G16794.T27.E2	Cucsat.G16794.T27.E2	exon
Cucsat.G16794.T27.E3	Cucsat.G16794.T27.E3	exon
Cucsat.G16794.T27.E4	Cucsat.G16794.T27.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T27.C4	Cucsat.G16794.T27.C4	CDS
Cucsat.G16794.T27.C3	Cucsat.G16794.T27.C3	CDS
Cucsat.G16794.T27.C2	Cucsat.G16794.T27.C2	CDS
Cucsat.G16794.T27.C1	Cucsat.G16794.T27.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T27	Cucsat.G16794.T27-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding