Cucsat.G16794.T26 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T26
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236501 .. 1241152 (-)
RNA-Seq Expression	Cucsat.G16794.T26
Synteny	Cucsat.G16794.T26

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATT

Coding sequence (CDS)

ATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGA

Protein sequence

MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQVSLGWTF

Homology

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 23  MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 82
           MME KR +CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTP 111
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVP 92

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 21  ETMMEQKRTLCSVDESALTSLTPKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGKTD 80
           E MME KR + S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 81  TASVLLEAMEYIQFLHEQVKVLSAPYLQSTPT 112
           TASVLLE M+YIQFL EQVKVLSAPYLQ+TP+
Sbjct: 69  TASVLLEGMQYIQFLQEQVKVLSAPYLQATPS 95

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.5e-14
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 44  KRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVL 103
           KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  L
Sbjct: 331 KRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSAL 390

Query: 104 SAPYLQSTPTVLLQVS 118
           S PY++S  ++  Q S
Sbjct: 391 SNPYMKSGASLQHQQS 406

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot
Match: Q9SFZ3 (Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQST 110
           K RK+KLG+RI ALQQLVSP+GKTDTASVL+EA+ YI+FL  Q++ LS PY++++
Sbjct: 332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRAS 386

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 44  KRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLS 103
           KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++VL 
Sbjct: 142 KRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLC 201

Query: 104 APYL 107
           +PYL
Sbjct: 202 SPYL 205

[Close]

BLAST of Cucsat.G16794.T26 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 217 bits (553), Expect = 4.35e-70
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 216 bits (549), Expect = 1.77e-69
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 211 bits (538), Expect = 8.38e-68
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVM+VETMMEQKR+LCSVDESALTSLT KRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. NCBI nr
Match: XP_022158392.1 (transcription factor bHLH153-like isoform X1 [Momordica charantia])

HSP 1 Score: 207 bits (527), Expect = 3.97e-66
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQ
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. NCBI nr
Match: XP_022956205.1 (transcription factor bHLH153-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 201 bits (512), Expect = 7.15e-64
Identity = 106/115 (92.17%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQ
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 2.11e-70
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 8.57e-70
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL
Match: A0A6J1DX43 (transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024885 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 1.92e-66
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQ
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL
Match: A0A6J1ITA6 (transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479164 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 3.46e-64
Identity = 106/115 (92.17%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQ
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQ 115

[Close]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL
Match: A0A6J1GX68 (transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111457969 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 3.46e-64
Identity = 106/115 (92.17%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMME KR+LCSVDES+LTSLT KRHKT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 115
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQ
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQ 115

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T26 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	2.3e-28	73.86	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	1.4e-25	70.65	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q8GXT3	9.5e-14	56.58	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q9SFZ3	2.1e-13	65.45	Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=...	[more]
Q9LT67	2.1e-13	64.06	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]

BLAST of Cucsat.G16794.T26 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152130.1	4.35e-70	100.00	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	1.77e-69	99.13	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_038906434.1	8.38e-68	97.39	transcription factor bHLH153-like isoform X1 [Benincasa hispida]	[more]
XP_022158392.1	3.97e-66	94.78	transcription factor bHLH153-like isoform X1 [Momordica charantia]	[more]
XP_022956205.1	7.15e-64	92.17	transcription factor bHLH153-like isoform X3 [Cucurbita moschata]	[more]

BLAST of Cucsat.G16794.T26 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4	2.11e-70	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	8.57e-70	99.13	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1DX43	1.92e-66	94.78	transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1ITA6	3.46e-64	92.17	transcription factor bHLH153-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GX68	3.46e-64	92.17	transcription factor bHLH153-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..100 e-value: 4.3E-4 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 11.693202
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 42..110 e-value: 5.8E-9 score: 37.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 47..108
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 17..115
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 17..115
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 51..102 e-value: 5.41819E-23 score: 82.6143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T26.E1	Cucsat.G16794.T26.E1	exon
Cucsat.G16794.T26.E2	Cucsat.G16794.T26.E2	exon
Cucsat.G16794.T26.E3	Cucsat.G16794.T26.E3	exon
Cucsat.G16794.T26.E4	Cucsat.G16794.T26.E4	exon
Cucsat.G16794.T26.E5	Cucsat.G16794.T26.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T26.C5	Cucsat.G16794.T26.C5	CDS
Cucsat.G16794.T26.C4	Cucsat.G16794.T26.C4	CDS
Cucsat.G16794.T26.C3	Cucsat.G16794.T26.C3	CDS
Cucsat.G16794.T26.C2	Cucsat.G16794.T26.C2	CDS
Cucsat.G16794.T26.C1	Cucsat.G16794.T26.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T26	Cucsat.G16794.T26-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding