Cucsat.G16794.T23 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T23
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236448 .. 1241175 (-)
RNA-Seq Expression	Cucsat.G16794.T23
Synteny	Cucsat.G16794.T23

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCAAATATCTTTATTTTATTTTTCTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATTTTGTAATTTGGTTAGTGATTATGTAATTGTCAAAAATCACTTTTGATACATTT

Coding sequence (CDS)

ATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA

Protein sequence

MVFQVLTLFLQERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN

Homology

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.8e-36
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 6   LTLFLQERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQST 65
           L+   +ERKDK+GERI ALQQ+VSPYGKTDTASVLL+AM YI+FLHEQVKVLSAPYLQ+ 
Sbjct: 32  LSFSSKERKDKVGERISALQQIVSPYGKTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTV 91

Query: 66  PTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKT-ISPKF 116
           P    +E+E   +SLR+RGLCLVP+  T GVA+SNGADIWAPVKT +SP F
Sbjct: 92  PDATQEELE--QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-35
Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 6   LTLFLQERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQST 65
           L+   +ERKDKL ERI ALQQLVSPYGKTDTASVLLE M+YIQFL EQVKVLSAPYLQ+T
Sbjct: 34  LSFSSKERKDKLAERISALQQLVSPYGKTDTASVLLEGMQYIQFLQEQVKVLSAPYLQAT 93

Query: 66  PTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 124
           P+   +EVE   +SLRS+GLCLVP+  T+ VA++NGADIWAPVKT +     ++S  N
Sbjct: 94  PSTTEEEVE--EYSLRSKGLCLVPLEYTSEVAQTNGADIWAPVKTPTSSHAFNLSSSN 149

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-22
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 13  RKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPT---VL 72
           RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++VL +PYL +      V+
Sbjct: 156 RKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVV 215

Query: 73  LQEVEPC--SHSLRSRGLCLVPISCTAGVARSNGADIWAP 108
             +V     +  LRSRGLCLVP+S T  V  SNGAD W+P
Sbjct: 216 TGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGADFWSP 255

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 12  ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQ 71
           +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  LS PY++S  ++  Q
Sbjct: 345 KRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQ 404

Query: 72  EVEPCSH-------SLRSRGLCLVPISCTAGVARSNGADIWAP 108
           + +  +         LRSRGLCLVP+S T  V      D W P
Sbjct: 405 QSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-20
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 13  RKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYL-QSTPTVLLQ 72
           RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY+ Q       Q
Sbjct: 282 RKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQ 341

Query: 73  EV--------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 108
           ++        E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 342 QISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Cucsat.G16794.T23 vs. NCBI nr
Match: XP_008454046.1 (PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA0044549.1 transcription factor bHLH113-like isoform X2 [Cucumis melo var. makuwa] >TYK17032.1 transcription factor bHLH113-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (571), Expect = 4.67e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 98  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T23 vs. NCBI nr
Match: XP_016901571.1 (PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 6.95e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 50  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 109

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 110 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]

BLAST of Cucsat.G16794.T23 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 224 bits (571), Expect = 8.20e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 114

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 115 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T23 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 8.20e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 114

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 115 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T23 vs. NCBI nr
Match: XP_008454043.1 (PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 3.73e-72
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 101 KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 160

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 161 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 213

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL
Match: A0A5D3CZQ3 (Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001780 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 2.26e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 98  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL
Match: A0A1S3BX75 (transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 2.26e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 98  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL
Match: A0A1S4E020 (transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 3.36e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 50  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 109

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 110 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 3.97e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 114

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 115 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 3.97e-73
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 11  QERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 70
           +ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL
Sbjct: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 114

Query: 71  QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 123
           QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 115 QEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T23 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	6.8e-36	71.17	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	3.4e-35	66.95	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q9LT67	2.5e-22	59.00	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	1.6e-21	52.43	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q94JL3	2.3e-20	53.85	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T23 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454046.1	4.67e-73	99.12	PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA00445...	[more]
XP_016901571.1	6.95e-73	99.12	PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo]	[more]
XP_004152130.1	8.20e-73	99.12	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	8.20e-73	99.12	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_008454043.1	3.73e-72	99.12	PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo]	[more]

BLAST of Cucsat.G16794.T23 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZQ3	2.26e-73	99.12	Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BX75	2.26e-73	99.12	transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S4E020	3.36e-73	99.12	transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0KYW4	3.97e-73	99.12	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	3.97e-73	99.12	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 9..56 e-value: 0.0013 score: 28.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..50 score: 9.813335
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 10..68 e-value: 2.0E-8 score: 36.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 11..64
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 8..107
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 8..107
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 11..58 e-value: 1.38756E-22 score: 81.4587

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T23.E1	Cucsat.G16794.T23.E1	exon
Cucsat.G16794.T23.E2	Cucsat.G16794.T23.E2	exon
Cucsat.G16794.T23.E3	Cucsat.G16794.T23.E3	exon
Cucsat.G16794.T23.E4	Cucsat.G16794.T23.E4	exon
Cucsat.G16794.T23.E5	Cucsat.G16794.T23.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T23.C4	Cucsat.G16794.T23.C4	CDS
Cucsat.G16794.T23.C3	Cucsat.G16794.T23.C3	CDS
Cucsat.G16794.T23.C2	Cucsat.G16794.T23.C2	CDS
Cucsat.G16794.T23.C1	Cucsat.G16794.T23.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T23	Cucsat.G16794.T23-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding