Cucsat.G16794.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236384 .. 1241155 (-)
RNA-Seq Expression	Cucsat.G16794.T2
Synteny	Cucsat.G16794.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATTTTGTAATTTGGTTAGTGATTATGTAATTGTCAAAAATCACTTTTGATACATTTTAAAATCACTTTCTATCTGAATATTAATTTTTATATCATTGACTCTAGTTTTGATGATAAAAGG

Coding sequence (CDS)

ATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA

Protein sequence

MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN

Homology

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 23  MMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTAS 82
           MME KR +CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVAR 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E   +SLR+RGLCLVP+  T GVA+
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTVGVAQ 129

Query: 143 SNGADIWAPVKT-ISPKF 160
           SNGADIWAPVKT +SP F
Sbjct: 130 SNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 94/148 (63.51%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 21  ETMMEQKRTLCSVDESALTSLTPKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGKTD 80
           E MME KR + S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 81  TASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAG 140
           TASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +EVE   +SLRS+GLCLVP+  T+ 
Sbjct: 69  TASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEYTSE 128

Query: 141 VARSNGADIWAPVKTISPKFEKHISPFN 168
           VA++NGADIWAPVKT +     ++S  N
Sbjct: 129 VAQTNGADIWAPVKTPTSSHAFNLSSSN 149

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 44  KRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLS 103
           KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+FL +Q++VL 
Sbjct: 142 KRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLC 201

Query: 104 APYLQSTPT---VLLQEVEPC--SHSLRSRGLCLVPISCTAGVARSNGADIWAP 152
           +PYL +      V+  +V     +  LRSRGLCLVP+S T  V  SNGAD W+P
Sbjct: 202 SPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGADFWSP 255

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-21
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 44  KRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVL 103
           KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  L
Sbjct: 331 KRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSAL 390

Query: 104 SAPYLQSTPTVLLQEVEPCSH-------SLRSRGLCLVPISCTAGVARSNGADIWAP 152
           S PY++S  ++  Q+ +  +         LRSRGLCLVP+S T  V      D W P
Sbjct: 391 SNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYL-QSTPTVL 114
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY+ Q      
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 115 LQEV--------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 152
            Q++        E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Cucsat.G16794.T2 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 326 bits (836), Expect = 1.99e-112
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 325 bits (832), Expect = 8.10e-112
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 315 bits (808), Expect = 3.70e-108
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVM+VETMMEQKR+LCSVDESALTSLT KRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPK+EK ISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKYEKPISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. NCBI nr
Match: XP_022158392.1 (transcription factor bHLH153-like isoform X1 [Momordica charantia])

HSP 1 Score: 304 bits (778), Expect = 1.39e-103
Identity = 156/167 (93.41%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQE+EP 
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPY 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLR+RGLCLVPISCTAGVARSNGADIWAPVKT SPKFEK ISPFN
Sbjct: 121 SHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKAISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. NCBI nr
Match: XP_008454043.1 (PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo])

HSP 1 Score: 303 bits (775), Expect = 1.95e-102
Identity = 166/213 (77.93%), Postives = 167/213 (78.40%), Query Frame = 0


Query: 1   MIASSLCNASAKFP---------------------------------------------- 60
           MIASSLCNASAKFP                                              
Sbjct: 1   MIASSLCNASAKFPVQLKLCSLDSEVCVHFRRKFSKDNRFLNFCLSKAKQTQISRFKTKY 60

Query: 61  AEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 120
           AEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP
Sbjct: 61  AEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 120

Query: 121 YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 167
           YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI
Sbjct: 121 YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 180

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 326 bits (836), Expect = 9.62e-113
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 3.92e-112
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNASAKFPAEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL
Match: A0A6J1DX43 (transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024885 PE=4 SV=1)

HSP 1 Score: 304 bits (778), Expect = 6.72e-104
Identity = 156/167 (93.41%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60
           MIASSLCNA+AKFPAEVMEVETMMEQKR +CSVDES LTSLTPKRHKTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQE+EP 
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPY 120

Query: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SHSLR+RGLCLVPISCTAGVARSNGADIWAPVKT SPKFEK ISPFN
Sbjct: 121 SHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKAISPFN 167

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL
Match: A0A1S3BYH3 (transcription factor bHLH113-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 9.46e-103
Identity = 166/213 (77.93%), Postives = 167/213 (78.40%), Query Frame = 0


Query: 1   MIASSLCNASAKFP---------------------------------------------- 60
           MIASSLCNASAKFP                                              
Sbjct: 1   MIASSLCNASAKFPVQLKLCSLDSEVCVHFRRKFSKDNRFLNFCLSKAKQTQISRFKTKY 60

Query: 61  AEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 120
           AEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP
Sbjct: 61  AEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 120

Query: 121 YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 167
           YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI
Sbjct: 121 YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 180

[Close]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL
Match: A0A1S4E020 (transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 298 bits (762), Expect = 1.55e-101
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 15  AEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 74
           AEVMEVETMMEQKR+LCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP
Sbjct: 10  AEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSP 69

Query: 75  YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 134
           YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI
Sbjct: 70  YGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPI 129

Query: 135 SCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167
           SCTAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 130 SCTAGVARSNGADIWAPVKTISPKFEKHISPFN 162

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	1.4e-44	69.57	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	7.3e-41	63.51	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q9LT67	1.5e-22	55.26	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	3.8e-21	49.57	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q94JL3	2.4e-20	53.77	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152130.1	1.99e-112	100.00	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	8.10e-112	99.40	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_038906434.1	3.70e-108	97.01	transcription factor bHLH153-like isoform X1 [Benincasa hispida]	[more]
XP_022158392.1	1.39e-103	93.41	transcription factor bHLH153-like isoform X1 [Momordica charantia]	[more]
XP_008454043.1	1.95e-102	77.93	PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo]	[more]

BLAST of Cucsat.G16794.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYW4	9.62e-113	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	3.92e-112	99.40	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1DX43	6.72e-104	93.41	transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3BYH3	9.46e-103	77.93	transcription factor bHLH113-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S4E020	1.55e-101	99.35	transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..100 e-value: 4.3E-4 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 11.693202
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 42..111 e-value: 1.2E-8 score: 37.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 47..108
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 17..151
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 17..151
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 51..102 e-value: 3.36602E-23 score: 84.5403

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T2.E1	Cucsat.G16794.T2.E1	exon
Cucsat.G16794.T2.E2	Cucsat.G16794.T2.E2	exon
Cucsat.G16794.T2.E3	Cucsat.G16794.T2.E3	exon
Cucsat.G16794.T2.E4	Cucsat.G16794.T2.E4	exon
Cucsat.G16794.T2.E5	Cucsat.G16794.T2.E5	exon
Cucsat.G16794.T2.E6	Cucsat.G16794.T2.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T2.C6	Cucsat.G16794.T2.C6	CDS
Cucsat.G16794.T2.C5	Cucsat.G16794.T2.C5	CDS
Cucsat.G16794.T2.C4	Cucsat.G16794.T2.C4	CDS
Cucsat.G16794.T2.C3	Cucsat.G16794.T2.C3	CDS
Cucsat.G16794.T2.C2	Cucsat.G16794.T2.C2	CDS
Cucsat.G16794.T2.C1	Cucsat.G16794.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T2	Cucsat.G16794.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding