Cucsat.G16794.T19 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16794.T19
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Eukaryotic translation initiation factor 2A
Location	ctg24: 1236444 .. 1241153 (-)
RNA-Seq Expression	Cucsat.G16794.T19
Synteny	Cucsat.G16794.T19

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTAATTTTCTTTATTTTCTTTATTTAAACACTTTCAAATAATCTTCACTCCCCTCTTCTCCCCTTTCCCACTAGAGTTTGAAACTCTCTTCTTTCCCTCTCTTACAAAAACCTCAATCATCCTCCATTTCTTTTAATTCCTTCTTCTTTAATCCATCCATTTCAACTCTATTTCTCTTCTAGACCTTCATCTTCCATTGCTACACAGATTTATTTCTTCTTCCATCTCCAAATTATCGATTAACCACCACAAAACGCGCTCCTCTTCTTCGATTCTTCAATTCTACTCTTCTACTACTCTTTACACCTTCCCTTGTTGTTTCCAGTGATCGGATTTTTCCTCTATTATACACTTTGTCGGGATGATTGCCAGCTCTCTCTGCAATGCTTCCGCTAAATTCCCGGTGTGTGTTTCTTTTTCTTTACTTTTTCTTGAACTGTGTTTTGTCTTCTTGTTTCTGTTTAGTGATAGACTCTCTAACCTTTGTTTTTTTTTTTTTTTTTTTTGTCTTCTTTAAGATTGTAGTTTTTTTTTTAAAAAAAATTGTTTAATTGTATATCGTAATCTGGTTATACTGCTTGGTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATTCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCCTTTGGGTGAATTTGTTTATTTGTTAATGGAAAAAGAAAAAAAAAATTATATGAAAAATTAATTTGTGTTTCTGGACCCACCTTTGTTTCATTTATATCATCTGTTTCGTTTTAAATAACTTAATTATTCTGGATTCCAATTACCCCAACACTTTTACTTTTTGTCAAAAAGTAAAAGGAAAAGAAAATTTTACAGGTGTTTTCCCCGTTTCTTATTCCAATGTATTATTTGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGGAAAGTTCACTGTATTTTCTCTTTTTACTGACAAAAAGAGTTCAAAGATGTAACTTTTAACTGTTAGTTAGTCAAAATGCTCTGGGTGAAAAGCCAAAATCCAGATGCTTTTAATTTGGGGATGAATTGCTAAGTGATGAGTTTATTGCTCTTGTTGTTATTAACCTATTTATCCTAATATTGTATACCTCTGTCCCTACCCTTTTCTTAGTTATTATTATTTATTTTATTGTGTTTATTGATTTCAATATTATATTTGTTGGAGATCGTCATTAAACTATGGAACTTTTGTCTACTTGTTTTCCTTGTCTTTTAGTATTTTGTATTAAAATTGATAATTGTTTTTAATGTAGTAGATCGAATGGATCAATATTATACTGGTTTTTTAGCGTGTGGTTTTGACCTCTGACCATGACCATGATTGAGTTTTGTTATTGATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGTATCAAAGTAATAACGTTTTGTCCAATCTATGGGAATGCAATAATTTCAAGGCATTTAATTGAAACTTATGAAGGTGGGAGTTTTTTTTTCTTGGTTGTAGGATCCATTTGGTAAAGAAAGTCAAACAATATGTCTTTTATATGTAAATACACACGACTAGGCACTTAAAAATATCCCTGTCTTGAACCTGTGAGAGTATTCCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGATGTTTGAGATCTCTTATAGATGAAATCCTTTTTTAGTATAATACTTGCATTTCTTTCTTCCCTTAATAAAATTGTCATATTTTATTATGAAAGGTTTAATTAAAACTTCACTCCTTAACGTTTGAGGTTTGTGTTCATTTTCGTTGAAAATTTTCAAAAGACAACAGTTCCTGAACTTCTATCTTTCAAAAGCTAAAAAGACAAAAATTTCAAGTTTCAAGACTAAATATGTAATACGTTACCCATACGAAAATATAGTATTCATTCAGACTTACAAAATTGAATATTGATTGAATTGGAATCTGTTCCAGGCAGAGGTGATGGAGGTTGAAACGATGATGGAACAGAAGAGGACTCTATGCTCGGTTGATGAGAGCGCTCTTACTTCACTTACACCCAAACGGCACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTACTGTTTCAACTTCACATTGCAACATCGTGAATATTAAGTTCATATAATAATATAATCAGTATTAGTAGTATATATTATAATAACTACTGGGCGTTCCATTAGACAGGCCTTCTGATCACATTGTTTTGGGTGGTCCAATAATCTTTCATTATTTCTTCACTTGATTGGTCCCAATGGTCCTGTTTTGTTCTTCATGATTTGCTTCGCCTCTCCATCCCATGGTTTTCCAAGTACTAACACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAATTAAATACTCAAAGAATCTGATATTTTAGATTGAAATTTGAGGATAATATTGAGGGTTGATTAGATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTTAAATTCTGATTTGGGTACCAGATACGAATGGCTATCATGCCATGCACATGTCTTTTCTATGGCCTGTATGATTTTTCCCTCCGTCAATTCCTTCTAATTGGTCAATGGAATATATATCTTTCTCACTTCCACATTTTCCTCTGACATTAGTCAGTACTTGCATGCAAAGCGTTTTGAGCATCAATCAGTGGCTAAAAAATCACTGGATCTTTTTAGTGTAATTTAATGTCAGTTTGGTTTGTCTCTCTTCACTTTTTCTTCTCTCTCTCTCCCGGACTTTGTTTGCTGAGTATTCTTCCATGCCTATTTTAGTTTTAGGTATTTAGTCATTCTGTTCCTTTCTTCCATCACACTCTCCCTAATCAGCAAGGGAACATTAACTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCATATGGACTATTATTGTATTCTATATGTAAGAGTTCTTTTGTGACTACTGTTCATGTAATCATGTTTGACTGATTTTCAACCGTTGATTTATTTACCAAGTCCATGAAATTGGTTTAGTTTGGATATTGGAGGACTAGAACAGAGTAATTTGACTGAAAAATTGTCTGCCACTTTCAATGAACTTATCAAATACTAATTGTGTATTTGTGCGGCTAGAAGTGTAATTTTATATTCCCTAATGTTATTTTGACGTGATTTCAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTTGATGATTTGACGAAGTGTGCTTCGTAAACACTTTTTCTTAGCAGGAAAATTTTAATAGTGTCCCTTAAACCCCAAAAATTGCCTTTGTTAAATCATCCATTAACTCAGTAGTTGAAGCTTATAGATTCCAGTTAACGTAATTATATCAATAATTCAACACTCCCCTCACTTGTCAGCTTAAAAATTTATAAAAGGCCTAACATAGTTTCATGTATTTGTTAGAAGATATAATGTTCCATTTTCCTTCCCTCATCAACTTAATGTTTTGGATAAATTGTTGATTTAACACAACTCCTACAATATTATTTCTATAATATTGATTTCAAAACCCAACGAAGGTGTGAGAATGCAAGATGATATTAAATTTACTATCACTCATTAACTCTAGCTCCTAGACAGTCTTGAAACTAGAACCTATCTTTAATCTTCCAATGATCATTTTCATTGCTTTTGATATTAGATTCAAGTCGGAGTGATGCTTTAATATCATAATATAAATCTTTTTGAATATTTATGGCGAGGTTTAAACTGGTTTTTTGTTAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGACCATAAAATCAGCTTAGCAGCTTCTGCATACGGTTGCTAAAAAGAAAAGGGTAACTACTTATCTTCATATCTAATTTTACAACAAATTTTCCCTCTGGAAGTGTAGGAAGATGAATATTGGTATCAAATAATTTAGGCATGGTGGTTGGAAAATGTAATTCTTCTGTTGTTACAAAAAAGGATAGGTAGAGTTATGAATCACCACACCATTCTAGTTTTATTAACTGGTGAAGAAGAAGGGTATAGTTTATTATCTTTGTAGTGTATTTTGGTGTATTTAAATGGTGGAAATGTGTATATTGTGAACGGAATTATATATGATGAGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGCTACCTGCCTAGGTAAACAGTAGCCTTTAATTTATGTTCACGTTGGTCTACTAAATCCAATTTCGATGGATGGGAATTTAGTATTTTGTAATTTGGTTAGTGATTATGTAATTGTCAAAAATCACTTTTGATACATTTTAAA

Coding sequence (CDS)

ATGGTCTTGGGCCAAAATTTATTTTGGCTCTTGAAATCCAAAAAGCTACATTTCATGATTTTGCTCTCAGTATTAAAACCATTGCCCTGTTTGAATCAAAATCATGCAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAAGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCACCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGGTGGAGCCATGCAGCCACAGCCTGAGGAGCAGAGGCCTTTGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCACGGAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGCACATCTCACCATTCAATTGA

Protein sequence

MVLGQNLFWLLKSKKLHFMILLSVLKPLPCLNQNHAISLQTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN

Homology

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E   +SLR+RGLCLVP+  
Sbjct: 59  KTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMEN 118

Query: 100 TAGVARSNGADIWAPVKT-ISPKF 123
           T GVA+SNGADIWAPVKT +SP F
Sbjct: 119 TVGVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-24
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +EVE   +SLRS+GLCLVP+  
Sbjct: 61  KTDTASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEY 120

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 131
           T+ VA++NGADIWAPVKT +     ++S  N
Sbjct: 121 TSEVAQTNGADIWAPVKTPTSSHAFNLSSSN 149

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYL-QSTPTVLLQEV--------EPCSHSLRSR 99
           +TDTASVL EA+EYI+FLH+QV VLS PY+ Q       Q++        E  +H LR  
Sbjct: 302 KTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGH 361

Query: 100 GLCLVPISCTAGVARSNGADIWAP 115
           GLCLVPIS T  VA    AD W P
Sbjct: 362 GLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-12
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPT---VLLQEVEPC--SHSLRSRGLCL 99
           +TD ASVL EAM YI+FL +Q++VL +PYL +      V+  +V     +  LRSRGLCL
Sbjct: 176 KTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCL 235

Query: 100 VPISCTAGVARSNGADIWAP 115
           VP+S T  V  SNGAD W+P
Sbjct: 236 VPVSSTVHVENSNGADFWSP 255

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSH-------SLRSRGL 99
           +TD ASVL EA+EYI+FLH+QV  LS PY++S  ++  Q+ +  +         LRSRGL
Sbjct: 366 KTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGL 425

Query: 100 CLVPISCTAGVARSNGADIWAP 115
           CLVP+S T  V      D W P
Sbjct: 426 CLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Cucsat.G16794.T19 vs. NCBI nr
Match: XP_008454046.1 (PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA0044549.1 transcription factor bHLH113-like isoform X2 [Cucumis melo var. makuwa] >TYK17032.1 transcription factor bHLH113-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 3.53e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 60  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 119

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 120 TAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T19 vs. NCBI nr
Match: XP_016901571.1 (PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 5.19e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 72  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 131

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 132 TAGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]

BLAST of Cucsat.G16794.T19 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 182 bits (461), Expect = 6.08e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 77  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 136

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 137 TAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T19 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 6.08e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 77  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 136

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 137 TAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T19 vs. NCBI nr
Match: XP_008454043.1 (PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 2.57e-55
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 123 KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 182

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 183 TAGVARSNGADIWAPVKTISPKFEKHISPFN 213

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL
Match: A0A5D3CZQ3 (Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001780 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.71e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 60  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 119

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 120 TAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL
Match: A0A1S3BX75 (transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.71e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 60  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 119

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 120 TAGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL
Match: A0A1S4E020 (transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 2.51e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 72  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 131

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 132 TAGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 2.95e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 77  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 136

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 137 TAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 2.95e-56
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 40  QTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 99
           +TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC
Sbjct: 77  KTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISC 136

Query: 100 TAGVARSNGADIWAPVKTISPKFEKHISPFN 130
           TAGVARSNGADIWAPVKTISPKFEKHISPFN
Sbjct: 137 TAGVARSNGADIWAPVKTISPKFEKHISPFN 167

The following BLAST results are available for this feature:

BLAST of Cucsat.G16794.T19 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	1.3e-24	70.24	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	6.3e-24	63.74	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q94JL3	1.5e-12	51.19	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]
Q9LT67	9.5e-12	51.25	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	1.6e-11	46.34	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]

BLAST of Cucsat.G16794.T19 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454046.1	3.53e-56	98.90	PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA00445...	[more]
XP_016901571.1	5.19e-56	98.90	PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo]	[more]
XP_004152130.1	6.08e-56	98.90	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_008454045.1	6.08e-56	98.90	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_008454043.1	2.57e-55	98.90	PREDICTED: transcription factor bHLH113-like isoform X1 [Cucumis melo]	[more]

BLAST of Cucsat.G16794.T19 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZQ3	1.71e-56	98.90	Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BX75	1.71e-56	98.90	transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S4E020	2.51e-56	98.90	transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0KYW4	2.95e-56	98.90	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A1S3BYX6	2.95e-56	98.90	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 40..114
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 40..114
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 40..65 e-value: 3.52939E-10 score: 50.2576
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 28..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16794	Cucsat.G16794	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T19.E1	Cucsat.G16794.T19.E1	exon
Cucsat.G16794.T19.E2	Cucsat.G16794.T19.E2	exon
Cucsat.G16794.T19.E3	Cucsat.G16794.T19.E3	exon
Cucsat.G16794.T19.E4	Cucsat.G16794.T19.E4	exon
Cucsat.G16794.T19.E5	Cucsat.G16794.T19.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T19.C3	Cucsat.G16794.T19.C3	CDS
Cucsat.G16794.T19.C2	Cucsat.G16794.T19.C2	CDS
Cucsat.G16794.T19.C1	Cucsat.G16794.T19.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16794.T19	Cucsat.G16794.T19-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000049	tRNA binding