Cucsat.G16592.T1 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G16592.T1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	54S ribosomal protein L51, mitochondrial
Location	ctg24: 1226974 .. 1230306 (+)
RNA-Seq Expression	Cucsat.G16592.T1
Synteny	Cucsat.G16592.T1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGATTTTCATTTATGATTGGGTTAATTTTTGAGACAATCTTACAAAGTTTAAGGGTATTTGTGTAATTTAGTCATTTTTTTGGTTCTTCTAAACCCTCGTTGAGTCTCAGCCACCCCCTCCGGTCTTCTTCCCTATAACCAACCCCCTACCCCTGCACGCATTTCCTGACCCCCGCCCTTTCACCCTGCCGGCGAAATCGCCGCCGCCCTATATCACACTCTCTCGTCACTTTCAGTAATCAGAGCTACTTGTCGCTATTTATTTTTTCTACTCAGAAACACAGTGGTCGTACCCTTACCCTCGCCGTTGGTGAGATCACTCAACTGCCGCTCGTTTTTCAGATCCCAAGGTTTTATTTTTTTAATTTTTGTTTCTTCGGGTTATGTTGGTTTATTATGTTCACCCACGGAGAAGAAAATCAAGAACAACTTTTGTTTTTGTTGATTTCTTTTGCATACAATGATCAACTAGTCAGCATGAAAACTAAGAATGTATACCTTACAAGATACAAAATAATAATAATAATTAAAGAGGAAATAATTAGGCTTTCTTCTTGAATATATTAGAAACTATCAATACCTATGAACTAGAGCATAGTAGGGGGTGAGCCTTTGCTTATGAACTAGCCAGGCATTATAGATGGTTTTCCAAACTTTTTGCAGAATATGGCTTTGCGAGGTGTTTGGCAGCTTAAGAAGTTGGTTGTCAGCTATTGTGATTGGGGAGGAAGCAGCAGAGGCATCAGGTTTGTTGGATTGCTAAACTATTGCCTATTAGATTACTTCAATACTGAGAATTCGGTTTTTAACTGATGGAAGTTTAAGTTTTAATCTGGAAGTCTTCGTATGTCCATTTTCCAGCATAATTACCTTACTCATCTTAATGAGTATTGAGTTGGGTAGAAGTAGGAGATATTGGAAATGTCTTGCTTTTAGAAATGAGTTATTCAGAAGGGTTCTTGAAGTGTGGCGAGGCACATCCTTTTTTTTCACAGACCGTCCCCTCTATGCCTACCAAGCTTACAAAATGACCTTATCTTTTCTTTTACCTAACCCAAACATGGAATGTCCGCGTGTCATCTCTTTAAAATAATTGTCAATGTTTAGTAATGCTAGTGATGTTTGAGGAAATTGAACCACACCATATGGTTCTTTAAAATAATAGGCTCAAAATCAGAATCAAAACACCATATCAATTGGAATTGTAGTTTAACTTATGTTTATTCTCTCTAATGTAACACGTTCTGGTTTCTAAGTTTAAGCCTAAGTTTAATTTATATTGCTTGACTTGATTCTTAATAACCAACAGCGTAGATATTATATAGATTATACTGTATAAGTTGCTTTTGTGGAAGCAAACTGGAAAGATTTTTTCTCACACATCAGTTTAGTATCAAATTGTACAGCCTCCATAGGAGGTCTCTTGTCAGTTGTCGCATGTATGCTTGGATTCACTTATTCCAAGTTATGTTCTTTTGAGTGTGTTGTTGGGAAAACTATAGAATAGATAGCAGACCTATGCAAATCATATCCTCAATCTTGCATATATATCAAATAGATACATGTCTACTAGCGCTTGCGTCATAGCTATGTAGGTTCTGATAAAGTGCATTTATCTGCCCAGGGAATGAGAATTCCTTTAGGAATCTCTGATTTTTTAATTTATGTTCATCTTTGAAGCCTAATAATCAAACATGTGAAAAGTTCCATGTTTTGAGTGGAGGCTTGCCAAGTTGACTTCCTGGGCCTCTTTGGTGGGGTGTGAAGTCAGTCAGCTTCTTGAATCCTTTCCTTGGTCCTCCTTTGGGAGATGTCTCGAGATCCGTGTGTTTCTGGAACCATTGGTGGGGAAAGTACAGAGAAATTGTTGTCATCGTGGAAATAAGTTTTTTCTCTGGAGGGGGAAGATTAATCTTGATTCAATGTGTTTAGTAGAACTTCTATATAGTACGTCTTTCTTAGCACCTCACCGTTTTTACTGGGTCTCAGGCATTGAGTTGAAGGGTTATTGTAAGAATTTCGGGTCTGCTATTGCGTTGGGATTTCTTATGTTCTCTCAGTTCATTCAGTGTTCCATTGGGGATGGTCGAACACAAACTTTTGGGACGATTTCTAGGTGAATGAGAGACCCCTTTGTGCCTGGTTTCTTCAGCTTTATTCTTTTGGATTTTGACTTTGTAACTGGGTTTTTTTCCCTTTTCTTCTTGTTCTTGAGCTTGTTTTTTGTTTGCTCTTCTATATCCTTTTATCTATTTCAATGAAAGTTTGGTTTCTTCTAAAAAAAATAAAAATAGAAACTTTCCTTCATCCCTTTCCTGTGATATAAAGCCAAGCCTTCTCTGCCCGCCCTTTCGCTGGATGAGACCCGGTTTTTAGGCCAGTCATAAATCACCGGTCAACTTATCAGTGCTTCAAATCGTCTTGCTACTATCATATGGATCAAAACCGCACAAGCGGCCTGAACATTTTTCTTGATATAGAATATACTCGCCACTCGGTTATTGCTAGTCCTCGTGTAGCTTTGATAGTGAAACACATTTTCCTGAATGATTTGTATGTCATCATTGAATTTGCAGAGCATTTATGGAGTCGCAGATGCCAGCTTTTAAGGAGAAAAATCCTCAGCTAGAAGTAGTTACTGAGCTCATTCGTGGCCAGCATCCACACTTGAAGGGATTCTTCAGTAATTCCCTTTCCCTCTCAACTTTTGGTTGTTCATAGTAATAATAATTTACAAAGCGTTTTACGTTTGGTTTTTACCCGGATTCTTTATCTTTCACAGGAAGCAATAACAACCGAGTGGTATGTGTGAAGAACATGGATCCAGAAGAAATTCATTCATGTGCAATGAGGCTAAGGAATTCACTGGGACGAAAGGTCGTAAAACTGAGAACAAGACATGTAACCAAAAATCCCAGTGTGCAAGGTACCTGGAACACTGATGTAAGATTTTGAGGGCTGGATGGATAATTTAATCATTCCTGAAGAGCTTGATTTCATTTAGAGAATGTTTCTTCCATCAATAATAAGATGTTGAAACCAAACTTCTTTATAGAATTGCTTGAGTTTTTGTTGTTTGTAGCAAGTCCTTATGTAACTTTTGAGGTAGTTATTATTTCCCCGGTTCTCTGAACACTTCCGGAAGGTTTTGGATAAAAACATTTTGTTCGTCTTGAAGGATATATGAAACAGAATGGGGTTCTAATTTGAATTGGTAACTTCTAATTCTAAACATTCAAAGCTGCCAACAAGAATTGAAATATTCATCAGACGAGAACACCCCAAGATTACATTTTTGTTGTTCTCGATTTGAACTTCTTGACTTAGTTTG

Coding sequence (CDS)

ATGGCTTTGCGAGGTGTTTGGCAGCTTAAGAAGTTGGTTGTCAGCTATTGTGATTGGGGAGGAAGCAGCAGAGGCATCAGAGCATTTATGGAGTCGCAGATGCCAGCTTTTAAGGAGAAAAATCCTCAGCTAGAAGTAGTTACTGAGCTCATTCGTGGCCAGCATCCACACTTGAAGGGATTCTTCAGAAGCAATAACAACCGAGTGGTATGTGTGAAGAACATGGATCCAGAAGAAATTCATTCATGTGCAATGAGGCTAAGGAATTCACTGGGACGAAAGGTCGTAAAACTGAGAACAAGACATGTAACCAAAAATCCCAGTGTGCAAGGTACCTGGAACACTGATGTAAGATTTTGA

Protein sequence

MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKGFFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF

Homology

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot
Match: Q9UUC8 (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 29/105 (27.62%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 10  KKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKGFFRSNNNRV 69
           +++  SYC+WGGSS+G++ F+ +++ +  +++  +E      +G+HP ++ ++ +   +V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWN 115
           +C + M    I   A+  R+S G K   ++    + NPSV+G W+
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIWS 128

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot
Match: Q758S3 (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-11
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 6   VWQLKKLVVSYCDWGGSSRGIRAFMES-QMPAFKEKNPQLEVVTELIRGQHPHLKGFFRS 65
           ++  KK+ + YC+WGGSS+G+R F+ S ++  + EK PQ++    + +  HP LK  + +
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQFEV-VAKAGHPVLKAEYIN 79

Query: 66  NNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTK-------NPSVQGTWN 115
             N+ +CV+N++ + +      LR S G ++     RH  K       N SV+G W+
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVWS 130

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot
Match: Q06090 (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-09
Identity = 33/115 (28.70%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 6   VWQLKKLVVSYCDWGGSSRGIRAFMES-QMPAFKEKNP--QLEVVTELIRGQHPHLKGFF 65
           V+  +K+ + +C+WGGSS G+R F+ S ++  + ++ P  Q EV+    +  HP L+  +
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMR---KSGHPLLRAEY 79

Query: 66  RSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRH---VTKNPSVQGTWN 115
            +   +V+CV+N++ + + +    L++S G  +++ RT++    + N SV+G W+
Sbjct: 80  TNGREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIWS 130

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot
Match: Q99N89 (39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.9e-08
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 4   RGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKGFFR 63
           R V QL++L +S      SSRG R F+E ++  F  +NP + V         P +   + 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  SNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTW 114
           +   R   V +   EEI S   +L +  G  V+++R    T NPS+QG W
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot
Match: Q8N983 (39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-07
Identity = 33/111 (29.73%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 4   RGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKGFFR 63
           R V QL++L  S    G SSRG R F+E ++  F  +NP + +         P +   + 
Sbjct: 21  RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80

Query: 64  SNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWN 115
           +   R   +     EEI +   +L +  G  V+++R    T NPS+QG W+
Sbjct: 81  NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWH 131

[Close]

BLAST of Cucsat.G16592.T1 vs. NCBI nr
Match: XP_004152128.1 (54S ribosomal protein L51, mitochondrial [Cucumis sativus] >XP_004152129.1 54S ribosomal protein L51, mitochondrial [Cucumis sativus] >KGN53023.1 hypothetical protein Csa_015078 [Cucumis sativus])

HSP 1 Score: 248 bits (634), Expect = 3.48e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. NCBI nr
Match: XP_038877046.1 (54S ribosomal protein L51, mitochondrial [Benincasa hispida])

HSP 1 Score: 240 bits (613), Expect = 5.57e-80
Identity = 113/119 (94.96%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFM+SQ+PAFKEKNPQLEVVTELIRGQHPHLKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F++SNNNRVVCVKNMDPEEIH CAMRLRN+LGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKSNNNRVVCVKNMDPEEIHLCAMRLRNALGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. NCBI nr
Match: XP_008454040.1 (PREDICTED: 54S ribosomal protein L51, mitochondrial [Cucumis melo] >XP_008454041.1 PREDICTED: 54S ribosomal protein L51, mitochondrial [Cucumis melo])

HSP 1 Score: 239 bits (609), Expect = 2.27e-79
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTEL RGQHP+LKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F++SNNNRVVCVKNMDPEEIHSCA RLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKSNNNRVVCVKNMDPEEIHSCATRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. NCBI nr
Match: XP_022979453.1 (54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 223 bits (568), Expect = 4.08e-73
Identity = 101/119 (84.87%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKL+VSYCDWGGSSRGIRAFM+S++PAF+EKNPQL++VTELIRGQHPHLKG
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F++SNN+RV+CVKNMDPE+IH  A RLRN+LGRKV+KLRTRHVTKNPS QGTWNTDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. NCBI nr
Match: XP_022158383.1 (54S ribosomal protein L51, mitochondrial [Momordica charantia])

HSP 1 Score: 222 bits (566), Expect = 8.24e-73
Identity = 103/119 (86.55%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQL+KL+VSYCDWGGSSRGIRAFM+SQ+PAFKEKNPQLEVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F+++NN RVVCVKN+DPEEI+  A+RLRN+LGRKV+KLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL
Match: A0A0A0KU37 (L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011700 PE=3 SV=1)

HSP 1 Score: 248 bits (634), Expect = 1.69e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL
Match: A0A1S3BXU0 (54S ribosomal protein L51, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494585 PE=3 SV=1)

HSP 1 Score: 239 bits (609), Expect = 1.10e-79
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTEL RGQHP+LKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F++SNNNRVVCVKNMDPEEIHSCA RLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKSNNNRVVCVKNMDPEEIHSCATRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL
Match: A0A6J1IW90 (54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479166 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 1.98e-73
Identity = 101/119 (84.87%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKL+VSYCDWGGSSRGIRAFM+S++PAF+EKNPQL++VTELIRGQHPHLKG
Sbjct: 1   MALRGVWQLKKLIVSYCDWGGSSRGIRAFMDSELPAFREKNPQLQIVTELIRGQHPHLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F++SNN+RV+CVKNMDPE+IH  A RLRN+LGRKV+KLRTRHVTKNPS QGTWNTDVRF
Sbjct: 61  FYKSNNHRVICVKNMDPEDIHLHATRLRNALGRKVLKLRTRHVTKNPSAQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL
Match: A0A6J1DVX7 (54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111024881 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 3.99e-73
Identity = 103/119 (86.55%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQL+KL+VSYCDWGGSSRGIRAFM+SQ+PAFKEKNPQLEVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMDSQLPAFKEKNPQLEVVTELIRGQHPHLKA 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQGTWNTDVRF 119
           F+++NN RVVCVKN+DPEEI+  A+RLRN+LGRKV+KLRTRHVTKNPSVQGTWNTDVRF
Sbjct: 61  FYKNNNERVVCVKNLDPEEINLHAVRLRNALGRKVIKLRTRHVTKNPSVQGTWNTDVRF 119

[Close]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL
Match: A0A5A7TSM4 (54S ribosomal protein L51 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001760 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 6.34e-71
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELIRGQHPHLKG 60
           MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTEL RGQHP+LKG
Sbjct: 1   MALRGVWQLKKLVVSYCDWGGSSRGIRAFMESQMPAFKEKNPQLEVVTELNRGQHPYLKG 60

Query: 61  FFRSNNNRVVCVKNMDPEEIHSCAMRLRNSLGRKVVKLRTRHVTKNPSVQ 110
           F++SNNNRVVCVKNMDPEEIHSCA RLRNSLGRKVVKLRTRHVTKNPSVQ
Sbjct: 61  FYKSNNNRVVCVKNMDPEEIHSCATRLRNSLGRKVVKLRTRHVTKNPSVQ 110

The following BLAST results are available for this feature:

BLAST of Cucsat.G16592.T1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UUC8	1.3e-12	27.62	54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q758S3	1.9e-11	31.62	54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 /...	[more]
Q06090	9.0e-09	28.70	54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q99N89	9.9e-08	31.82	39S ribosomal protein L43, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl43 PE=1...	[more]
Q8N983	4.9e-07	29.73	39S ribosomal protein L43, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL43 PE=1 ...	[more]

BLAST of Cucsat.G16592.T1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152128.1	3.48e-83	100.00	54S ribosomal protein L51, mitochondrial [Cucumis sativus] >XP_004152129.1 54S r...	[more]
XP_038877046.1	5.57e-80	94.96	54S ribosomal protein L51, mitochondrial [Benincasa hispida]	[more]
XP_008454040.1	2.27e-79	95.80	PREDICTED: 54S ribosomal protein L51, mitochondrial [Cucumis melo] >XP_008454041...	[more]
XP_022979453.1	4.08e-73	84.87	54S ribosomal protein L51, mitochondrial-like [Cucurbita maxima]	[more]
XP_022158383.1	8.24e-73	86.55	54S ribosomal protein L51, mitochondrial [Momordica charantia]	[more]

BLAST of Cucsat.G16592.T1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU37	1.69e-83	100.00	L51_S25_CI-B8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0117...	[more]
A0A1S3BXU0	1.10e-79	95.80	54S ribosomal protein L51, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494585...	[more]
A0A6J1IW90	1.98e-73	84.87	54S ribosomal protein L51, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1DVX7	3.99e-73	86.55	54S ribosomal protein L51, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7TSM4	6.34e-71	95.45	54S ribosomal protein L51 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007741	Ribosomal protein/NADH dehydrogenase domain	SMART	SM00916	L51_S25_CI_B8_2	coord: 18..91 e-value: 1.0E-14 score: 64.9
IPR007741	Ribosomal protein/NADH dehydrogenase domain	PFAM	PF05047	L51_S25_CI-B8	coord: 26..76 e-value: 2.4E-8 score: 33.8
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..118 e-value: 1.1E-42 score: 147.3
IPR039927	39S ribosomal protein L43/54S ribosomal protein L51	PANTHER	PTHR21396	39S RIBOSOMAL PROTEIN L43	coord: 1..117
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 8..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G16592	Cucsat.G16592	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16592.T1.E1	Cucsat.G16592.T1.E1	exon
Cucsat.G16592.T1.E2	Cucsat.G16592.T1.E2	exon
Cucsat.G16592.T1.E3	Cucsat.G16592.T1.E3	exon
Cucsat.G16592.T1.E4	Cucsat.G16592.T1.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16592.T1.C1	Cucsat.G16592.T1.C1	CDS
Cucsat.G16592.T1.C2	Cucsat.G16592.T1.C2	CDS
Cucsat.G16592.T1.C3	Cucsat.G16592.T1.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G16592.T1	Cucsat.G16592.T1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome