Cucsat.G16292.T5 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G16292.T5
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein TIC 40, chloroplastic
Locationctg2246: 440013 .. 443851 (+)
RNA-Seq ExpressionCucsat.G16292.T5
SyntenyCucsat.G16292.T5
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATTTGCCCGAGGAGATGAGAAATCCAGAAACATTCAAGTGTAAGTCTATTGATTAATTCAATCTTCAGGCAATATGCTTTCAATAGAAGTGAGAAATCAGGGTATAAATCAAAAAGATTAAGGCCAAGGGGTGTTCCTGCTCAAGATAGAAGCGGGAATCCTAGGAGGGGGAGGTTATGTTGGAAGTAAATAAGAAGAAAGTTAATGAACCAAAATTGAAAGGAAAAAACAAATGAAAAGAAAATGTAAGTATGAACTAAGTGGGTACTGTGAATGCAAGGAATAAATTAACTTGTGATTCCAACGTGATACAAGCTAGTTTTTCATTTCTATTTTAATCTTCTAAAATACATATTCGAAAAGTATTAATTTACACAACTAAGGGGGGTTGGTATCAATTTAATCCTTAAACTTTCATGTGTCAATCTATACTCTCCATTACATTTTGTTTGGATAAGCATCGTGTGAGACCTATAATTTTATTAGTGTAACAACACTTTTGTAATTGTATCGATTTGGATTCTCAATTAAGTTTTTTTTCTTTTAAAGTAGTCCATGCATCTATTCTAGATCGTCCATTTTATTAATTTAACATTTGAAGAAGCCACGTGTGAGAATTGAATGTTGGATGATTATCAAATGCAAGCTTAATAAAGGGTCTAAATTGGTTCACTTATATCAATTTACAAATTTAATTGAAACAATTATATGTTTCACACGATATCTATCAAACTAAGTTTGATGAAGGGTGTTAAACTGTTAATTGATGGACTTCAACTACAACGTGGAAGTATGATTATTATAGTGTTGCATATTGTACTATTATTCATTATTATAGTGTTGCATATTGTACTATTATTCTTTAAGCAGCCTCACAAGTCACAGATATATGAAAATGAAAGCTATATTATTGGGCCTTTTTTCTACCATGTTTTTGTTACTCCTACTACTAATTACATTCAGATGGTGAATTTTGTTACTCCTACTAATTATATTCTGTACATTATTTTGAACTTCACAATCTAGAATAAATTTCTGGTGTTTCTGTGGTTTTCTTTGGGGGCATACTTGGGAGATTGGCTACTTAGTTTGAAATTTTACTTGAGCAGTTTCTATTTTCTAATCTTCAGCAAGGCATCACTTATTTATTAGCTATATTGAATAGGGATGATGCAAAATCCATTATATCGCCAACAATTAGAAGAAATGCTGTAAGTTCAGTTTATTTATTTCTTTTTCCTCCTTTATAGAAATAATTATTTTATTCTATTCAAAGACTTCTCATATATATCAACGTTCGAATATTTGATGATGACATTTTTCCAGGGGTTGCTTATCCCAATTGTTTTTGAGACATAATTGATAGGTTGGACAGACTGGAGGTGTCGGTGCCTGTGGATGCGGACATATTTAAATAGTTATTTGTGCTTAATTTTATATCATTTGTATAACATTCAATAGTATATAATGTTACTTTTCATTTCATGGATGCGAGGTGCTAAACAATAATTACATGCTCGTATTTCTTGTCCCACTGTCTTCTCATTTTCATCATCTTAGTCCATTGGGTTAGAAGTTTCTAATATGTTTGAAATAGCGACATAACTACATCTTCTAAAGTGGTTGTTTTTTTCCATACATAATGTTTGAAGTATGGCTTTGCGTTTAATCACTTTATAAGTAAAACATTTGAAGCATGTGATATAACACTATTCTTAATCATTACTCTCAGTAACAATATGAGTGGAAGCCCACAATGGGACGGTCGCCTCATGGATTCTTTGAAGAACTTTGATCTTAGTAGCCCTGAAGTTAAGCAGCAATTTGGTCAGTCAAGTTGATCTCCTTTGATTTTGTACATTTTGTCTATAGTTGTTTCGTGGGTGTTAAATGGCTTGAATACTATTCTGTTGGCATTTGTTATGACGTCATATATTTCATATATAGCTGAGATGATGATATTTGTGATTTTCTGGTTGCATTGCAATCATATATTCTTCCACTCTTAAAAAAATCTGACCAACATTTGATTGTGTTTTTTGGTCAATAATTGATGAGCTCTGAAGTTTTTGTTAACTTTTATTCAGTTTTGGTTTTTTGATGCTGTTTGTTTCCCTTCTGGCTGAAATTGATTTAAATATATTTTTTGAAATTGAGTTGTAAAATCACGATTCATGAAGTCTCAGAATTAATAATTTCATTTAATATATCAATATGTTTTCGTGAGTTGGTACTTTTTAGAAATTAGATTTTAAAACAACTTTTATGTAATTAGGAATTAAAACCGTTTTCCCCCATGTTCCTGTGATGTTTTCTCAATTAGTTATTCATTTATATTAATAGTAAAAATAATTTAGGCTTGCTCTTCATTTTTGTACCTTGACAGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCAAAAATTATGGCCAATCCGGAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAGCCATCATGGATGTATGTTCTACTTAAGGTTGATAAATTTTTGGTTTCGAACCTAATATTTTGATTTTACTTTTTGCAGTGTTCACAAAATCCACTGAGTATCACAAAGTATCAAAACGACAAAGAGGTACGTGATTTGCACTTCCATCTATCACTCGGCTTATATAGAATCCAAACCAAGTTAACATAAATTCAGAATTTAACTTTCTTAATTCTGGTGGAAGACCTCTTTTTGCTGATTGTTGGTATATATTTTATGTAGTTAACTTGTTCATTCTCAACTTCACTTTATGCCTTTCTACGTTCATTCACATCGCTTCTATTTAATAATTAGGAAACTGTGGAGTTCTGTTGGAACATCCATTTCTGTTGTGATATATGGTCTGTAGATCTATTGTTTAGCTGTTTGTTCCATCATTTTTGGCTTTGTGTTTCGTGCGTGCATCTGCATATACCTTCTCATTCAATTCCTGCTGACGAAAGTTCCGTCAATTAAAGAAAATAAACACATCGCCAAAACTTGAGAGAATAACTTAACTGCTTGAGACAGTATATGTTTGAGTTCAGAAATCTGAATTTCAACCATCCCATGATCAACTCTTAAAAGAAAAAACCTATTGAATCTGTTCTTTCACACATGCGGTTGATTGTTTCATTTGTCTTTTTGTAATTTTCGATGTGATATTTTTGGACTTGTATTTCTTATTTTCTTGGGCAGATGAGTATTGATTTCCATTGCCTTATTTCTTTCCAACTATCAATAGGATATCACTCTCTCTCTTCTCTCATTTCTTTTATATTTTTTTTTTCTTTCTATTCCTTTAGGTCATGGACGTTTTCAATAAGATATCAGAACTATTCCCCGGAGTTTCTGGAGCACCATGATAGTTGTAGCTGTATTAGTACTGAATAGTATAAAATAACAAAATGTGAATTTGTGGAAGCTTGAGCATGGTTCTTCCCTGTCCAATTGCAAAATAAGTTGGGGGAAGCCATATCGATCTTCTAGTTCTCGAAACGAAGTTAGCTGAGTAAGGTCTCACCTGCTTCAATTACATGATATATATTGGAAATTTTTGGGTGAGCTAATTCTTTTTTCCCTTTTATAAACTAAGTTTCCTGTGTATTACTTACTTTCTCTGGAGATCATGTATTTATTAGTGGTTTTGCATTTAATCAGTTTTATAGGAACCTCCTTTTCACAGTGGTCAGATTGTAACTAAGAATCTTTTATGTCCCTTGATACATCAAGGCGGTCGATGTAATTTATTAGTAATTTTGGCATATTCCTATTTGCTTTAATTGAATGGCATTGTTGGAGGTAATGGCTGAATGAGAATATTGACCACCCTTTATTTG

Coding sequence (CDS)

ATGTTTCACACGATATCTATCAAACTAAGTTTGATGAAGGGTGTTAAACTGTTAATTGATGGACTTCAACTACAACGTGGAAGTATGATTATTATAGTGTTGCATATTGTACTATTATTCATTATTATAGTGTTGCATATTGTACTATTATTCTTTAAGCAGCCTCACAAGTCACAGATATATGAAAATGAAAGCTATATTATTGGGCCTTTTTTCTACCATGTTTTTGTTACTCCTACTACTAATTACATTCAGATGGTGAATTTTGTTACTCCTACTAATTATATTCTGTACATTATTTTGAACTTCACAATCTAG

Protein sequence

MFHTISIKLSLMKGVKLLIDGLQLQRGSMIIIVLHIVLLFIIIVLHIVLLFFKQPHKSQIYENESYIIGPFFYHVFVTPTTNYIQMVNFVTPTNYILYIILNFTI
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G16292.T5 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G16292.T5 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G16292.T5 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G16292Cucsat.G16292gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16292.T5.E1Cucsat.G16292.T5.E1exon
Cucsat.G16292.T5.E2Cucsat.G16292.T5.E2exon
Cucsat.G16292.T5.E3Cucsat.G16292.T5.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16292.T5.C1Cucsat.G16292.T5.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G16292.T5Cucsat.G16292.T5-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0045037 protein import into chloroplast stroma
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane