Cucsat.G15018.T4 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTTTAAGTTGCTACATCCTCCGATGGCTTCAACGGTCAATAACAGCTCGTATCTCGCTCTTGTGGCTCCCACTTTCCCTCCAAAATCTTCATCCTGAAAAGGAGATACTCCGAATCTTCTTCTTCTTCTTCTCCATCATCAATCTTTCTAGTTCAACTCATTCTCAATCACCCCACATCTGAGGTTCTCTTCATTTTGAATTTCGTAACAGGAATTGGGTTCTCAGAAGTTAAGGAGTTAGTGAGGATGAGAGCTTTGAATTCGCATTTTTTGCTGATTGATCTTCACAGTTCATGGCATTCGGCTAACCAAATCCCTATTTCGACTCTTGCATATCTGCAAAACTCTCATTCCGTTTCGAAATTCCCCTCGTCGTTTCGTCGAACACGTCCCGTGCGTAAAGGGGTTATTTCGTCTGAATCTTCGGCTCCGTCGTTTCGTTCCCCTGAAATTCGTCGGCCGTCGTCTGATCGGTTGTTTTCAGGTAATGGGTTGTTGACGAATCTGTCGAATTCGAATTCTAGCTTGGATTTGGACTCTGCTTCGACTTCGTCGCAGTCGAAGGCTACTGCGGAGTTGGAGATGTTTATTGAACTTTTGCCTTCGAGGATGAGGAAGGAGCTGAGATCGCACACTGAATTTCGGGAATTGATTGAAGTGGTGTTGGATTTGGGGAGGAACCCAATTGCTAGGTTTCCATCGGGGGACTGGCCCATTTCGGAAGAGCCTGTGAAGCATGAAGATCTAAGCCACGCGATAGCTAAGGTGATAATTTGAGTATATTTTATCCTCCAAAATATTTATGGTTCACTGTCACTTGGATTATAATTAATGTTTATTTTCTGTATAATTTATGCATAAAGTTGGGAATTGTGGATGAGCTGGAGTTTATTTTCATATGGAATGCTATGTAAGAATTAAGATTCAGCTCCCCTGTTGATGTATTTTACAATACATATTTTGCAGCGTTTAACTCGGTCCCTTTTGTGATTGGTTGTGTAGAATTTTACTGAAACATGGCACAAATTTGTGCTGTTAAATAACCAGGCTAGAAAGAAGACCGTATAGTTAAATAGGCCATTTAGAGGGTGAGATGAAATAAATTTGGGGTTGGTTTGTTATTTAGGTTGGAGACTTCTCAGATGACAACCGATCTGGCATGGACAGATCTTTGCATCGGATAAGTGCAATTCGAAACCGTAAAATGCAAATTATTGGCCTTACCTGTCGGGTGGGACGTTCTATCTCTGGAAGTGCTGAGATCATTCGTGATTTAGTAGAGGGTGGAGGTTCCATCTTGGTTATTGGACCGCCAGGAGTTGGGAAAACCACACTAATCAGGTATGTAAATTTACTAAGATTCTAAGAACAACCGGAATCAATACCTTATTATTCTCAATTTTTTCTTGATTCTTGATTAGCAGCACATTGTACAAAGAAGTGTAAGAAAACTATTAGAGGCTACGTGTACTATAAAAAGTCTTTGCATCAATGATCTCAAACCCCCACACCATAAAAATGATGATATTGTTTTTCAACTTCCAACTCCAAGAATAGGCCATAAAGAATGAGCTAAACTGAACTTTGATTGAAGTCTTACATTGTTGAAGTTATGGTCTACCCTCCCTTTACTTACCATATCGAATTATGGAATAAAATCATTCTTTTGTATTCTTTGACTTGTGCAGAGAAATTGCTCGGATGTTGGCAGATGACCACAAGAAACGTGTTGTTATTGTGGATACTTCCAATGAAATTGGAGGTGATGGAGATGTTCCCCATGCAGGAATAGGCAGTGCAAGGAGGATGCAAGTCCCTAATGTTAACATGCAGCACACGGTGAGAGCACAAGACACGATTATGGTTTTAACCATTACTTCATTTGATAGACCCAAATCAAGGTTCGAGTTGGTTTCTTTGTAGGTTATGATTGAAGCAGTGGAGAACCACATGCCTGAAACCATAATCATTGATGAAATTGGAACAGAACTTGAAGCACTAGCTGCCAGCACCATTGCTCAAAGAGGGGTTCAGCTGGTAGGGACAGCTCACGGGATCACCATTGACAACATCATAAAAAATCCATCATTGCAAATCCTTGTTGGCGGCATCGAGGTGTGAAAAAAAATCCTTCTATTTCTCTCAGCCTGCATCCAATGCATTTGCATGTGTCTTTAACTAGAGTACAAAGCAATTGTTAATCCAATGTTCAATGAAGATGTGCTCCATGGCCATCATTTCTAGCACATCGTCGGGGAGGAAAAAAGTTATCTTGTGAACTGCTAGCTGTCTTGCAAATCCTGTTTTCTAAAGGGAAGTATATTGATGAAAGTTGCTCTCATTTTTGTTTTCTTGGACATAGAGTGTGACCCTCGGTGATGAGGAAGCAAGGAAAAGAAAAGTGCAGAAGACAATTCTTGAGAGAAAAGGACCTTCTACTTTTACCTGTGCAGTTGAGATGATATCCAAAACTGAATGTCGTGTTCATCACAGACTGGATACAACAGTTGATGCAATATTAGCAGGTACTTTCTCCACTAATTTGGAATTGTTAAACTGTAATCCTTTCCTTCTTACATTCTTGCAATTGATCATCTGCCATCTGTATTCTCATTGGTGTAGGAAAACCTCCTCTTTTTGAAGTACGTCATGTAGATACTTATGCTAACCATTCTATGGGGTCATCACCAAATCATGTCAAGAGTCTTGGTCTTCACGAAAGATTACCTTCAAAAGATAGTAACATCATTGCTCATAGTGACTCTAACCTGAAAGTACGCCAGATGGAGACTTATGCTAACCATTCCGTGGAGTCGTCTCCAAAACACGAAACGATTCTTCAAGGAAGAGTAAATTTAAAAGATCTTAACGTCATTGCTGATAATGATTCTGACATAGAAGACGTTGGCCACTTTTCTCATCAGCCTAAGAGTAGATCTGTGAGCAAAAAGAGCTCACCAGTGCAAGTCTATTCTTATAAGGTAAATCACCTATGTTTGATTTATAAATTATAATTAATACACTTAAACGTTCTTCTGTTTATTTTTGGTTTGGTGTTGGGGGCGGTTGCTTTGGGATGGGATGGAATATTGTGGTAATCATATGCACTTTTTTATTACTGTATCTCACCCTTGATTTGGCACTTCCAGATTCTTGAATCTGATCTACTTCAAGTGGCACAAGTATTGGAGCTTGAGAATGAAATAGACGTAACTGATGACATTGAAACTGCCGATGCAATATTAGCAACCAGCTATGAAATGAAGCAAAACCCATGGATCCGAAGTGTAGCAAAATTTCACCACTTGCCTGTGTTTGTAATCAAGGTACTTTTACTTCTATAACTAAAAAATATACACATTCTTCCTTTAGATATTTACAACTTTATCGTTATACAGTCGAACACAATGGCTCAAATGGTGAAGGCAATACGAATGATTATAAAGATAGATTCCAGCTCTACATCCAAAAAACCACGAAAGACACCTGACATTGTAATAGAAGATGATGCACCAAAAAGAAAGCCATCTCTAGAAGAGATAGATGCATTGGAGGTAATTTCCTTGCACATTGATGCTTTTGTTTGTGTGTGTACAGGTGCGTTGTTTTGCATTTAAGTTAAACGCCAAACTCGACATTAGCTTATTCAAATTATTCGTGTAAGTAAAAAAATTTGAATTTTAGTCATATTTCACTGGTTCTGATTGTCAAAATCCTTAGCACATTGTTGCGATTAGCACTAATTATTAACAAGAGGTTTTATCCAATTAGAATTATAAATTCGCAGCAAATGTCTTTTTTTTTTTTTTGGAATTTTATAGCATGATGTTATTTTTTGATTTGATATGTCAAAGTTCCATACCAATTGATAGCACGATCTTCAGAAAGTTAGCACAACTTCTAATATAATTTTATTATTTATATGCTGAAACTTCTATTCATTTGGTACAACTCGCGCTGTATGTGGTTACAAGTTACAAGTAGCTTCATTGGCACTCTATTCCAATTTCAACTGCAATTCTATTGTCTTCCGCAAGCATCATAGCGTACTATGATATCCCTTTCTAACGAGAAGTGCATCACATGTGGCTAGGATTCTACTCCTGTTCCAAGAATCTAAATTCATGTTAATCTACTCACCTAATTCTGTACAATGTATGAGCTTGTTTAGGAGTGATTCTGAAATTGTTAAAAACTTAAAATCACTTTGAAACATGTTTTAAAAAACCAATTTTAATGATTCAAAATTTGCATTTTTACACTTACTATTGCGATTCTTTGGACATATATTCTTGTTCTGTGGTCTTAATCTTCTCCTGTTCCGAAATCTGACAGGAAGTTAGACTTGCCATTGAATATATTGTCATTCCTGGTGGAGAGCCAGTGGAACTTCTACCTCGATGTTCCGAAATTGTTGCCCGGCAACTTGAACTTGTTGAAAGTTATCAGTTAGCGGCTGAGTACTCCAGTTCTGATCCAAACCCCAGGTTGCAAATTCTTCCGGTAAGGTTGAAGAACAAGACTCTCAAAGAACCAAAATCGATTTTAAAATCAATAATTGATGAAGGAACTGGCATCTCTAGGCTGCCCTTGCTACCTGAATGAAATTTAACTACATCCCTAAACATGGTACAGTTGTCTTACAATTGTCAATTTATGATGTACAGGCATGTGAATAGTACATATAATATCTATATCTCATTAATATTGTTATTTATATCTTATGCCATCCTGGTTATACAACATTGTAAGAATTTCTTCAATAAAACAGTGAAATGGCTGTTGTAAATGAATACTTGCTCCAATATTCAACCAAATCTTGATCCCTTCTAGCTAGCTAGTATCTTTATTTCTTTTGATGGAAAAATGGGAAAAGGAAAACAAAAGAAATGCAATTAGATTTTGCATTTTGATCAATTAGCCATAGAGATATTAGATGGTTATTTT ATGGGGTCATCACCAAATCATGTCAAGAGTCTTGGTCTTCACGAAAGATTACCTTCAAAAGATAGTAACATCATTGCTCATAGTGACTCTAACCTGAAAGTACGCCAGATGGAGACTTATGCTAACCATTCCGTGGAGTCGTCTCCAAAACACGAAACGATTCTTCAAGGAAGAGTAAATTTAAAAGATCTTAACGTCATTGCTGATAATGATTCTGACATAGAAGACGTTGGCCACTTTTCTCATCAGCCTAAGAGTAGATCTGTGAGCAAAAAGAGCTCACCAGTGCAAGTCTATTCTTATAAGATTCTTGAATCTGATCTACTTCAAGTGGCACAAGTATTGGAGCTTGAGAATGAAATAGACGTAACTGATGACATTGAAACTGCCGATGCAATATTAGCAACCAGCTATGAAATGAAGCAAAACCCATGGATCCGAAGTGTAGCAAAATTTCACCACTTGCCTGTGTTTGTAATCAAGTCGAACACAATGGCTCAAATGGTGAAGGCAATACGAATGATTATAAAGATAGATTCCAGCTCTACATCCAAAAAACCACGAAAGACACCTGACATTGTAATAGAAGATGATGCACCAAAAAGAAAGCCATCTCTAGAAGAGATAGATGCATTGGAGGAAGTTAGACTTGCCATTGAATATATTGTCATTCCTGGTGGAGAGCCAGTGGAACTTCTACCTCGATGTTCCGAAATTGTTGCCCGGCAACTTGAACTTGTTGAAAGTTATCAGTTAGCGGCTGAGTACTCCAGTTCTGATCCAAACCCCAGGTTGCAAATTCTTCCGGTAAGGTTGAAGAACAAGACTCTCAAAGAACCAAAATCGATTTTAAAATCAATAATTGATGAAGGAACTGGCATCTCTAGGCTGCCCTTGCTACCTGAATGA MGSSPNHVKSLGLHERLPSKDSNIIAHSDSNLKVRQMETYANHSVESSPKHETILQGRVNLKDLNVIADNDSDIEDVGHFSHQPKSRSVSKKSSPVQVYSYKILESDLLQVAQVLELENEIDVTDDIETADAILATSYEMKQNPWIRSVAKFHHLPVFVIKSNTMAQMVKAIRMIIKIDSSSTSKKPRKTPDIVIEDDAPKRKPSLEEIDALEEVRLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLAAEYSSSDPNPRLQILPVRLKNKTLKEPKSILKSIIDEGTGISRLPLLPE Homology
BLAST of Cucsat.G15018.T4 vs. ExPASy Swiss-Prot
Match: F4J3R7 (Protein SEEDLING PLASTID DEVELOPMENT 1 OS=Arabidopsis thaliana OX=3702 GN=SPD1 PE=2 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 2.6e-60 Identity = 149/299 (49.83%), Postives = 196/299 (65.55%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy Swiss-Prot
Match: P51281 (Uncharacterized protein ycf45 OS=Porphyra purpurea OX=2787 GN=ycf45 PE=3 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 9.5e-15 Identity = 65/253 (25.69%), Postives = 131/253 (51.78%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. NCBI nr
Match: KAE8652015.1 (hypothetical protein Csa_006828 [Cucumis sativus]) HSP 1 Score: 579 bits (1493), Expect = 2.48e-204 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. NCBI nr
Match: XP_004150369.2 (LOW QUALITY PROTEIN: uncharacterized protein ycf45 [Cucumis sativus]) HSP 1 Score: 579 bits (1493), Expect = 1.49e-201 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. NCBI nr
Match: KAA0036506.1 (uncharacterized protein E6C27_scaffold147G00780 [Cucumis melo var. makuwa] >TYJ99975.1 uncharacterized protein E5676_scaffold360G00170 [Cucumis melo var. makuwa]) HSP 1 Score: 547 bits (1409), Expect = 7.80e-189 Identity = 284/302 (94.04%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. NCBI nr
Match: XP_008456535.1 (PREDICTED: uncharacterized protein ycf45 [Cucumis melo]) HSP 1 Score: 547 bits (1409), Expect = 3.10e-187 Identity = 284/302 (94.04%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. NCBI nr
Match: KGN62357.2 (hypothetical protein Csa_021691 [Cucumis sativus]) HSP 1 Score: 538 bits (1387), Expect = 3.01e-185 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy TrEMBL
Match: A0A0A0LJW1 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G324450 PE=4 SV=1) HSP 1 Score: 579 bits (1493), Expect = 4.44e-201 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy TrEMBL
Match: A0A5D3BNX6 (AAA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00170 PE=4 SV=1) HSP 1 Score: 547 bits (1409), Expect = 3.77e-189 Identity = 284/302 (94.04%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy TrEMBL
Match: A0A1S3C3G5 (uncharacterized protein ycf45 OS=Cucumis melo OX=3656 GN=LOC103496459 PE=4 SV=1) HSP 1 Score: 547 bits (1409), Expect = 1.50e-187 Identity = 284/302 (94.04%), Postives = 290/302 (96.03%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy TrEMBL
Match: A0A6J1HK97 (uncharacterized protein ycf45 OS=Cucurbita moschata OX=3662 GN=LOC111464873 PE=4 SV=1) HSP 1 Score: 444 bits (1141), Expect = 1.03e-148 Identity = 238/298 (79.87%), Postives = 257/298 (86.24%), Query Frame = 0
BLAST of Cucsat.G15018.T4 vs. ExPASy TrEMBL
Match: A0A6J1JMG0 (uncharacterized protein ycf45 OS=Cucurbita maxima OX=3661 GN=LOC111487190 PE=4 SV=1) HSP 1 Score: 442 bits (1138), Expect = 2.92e-148 Identity = 241/302 (79.80%), Postives = 260/302 (86.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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