Cucsat.G12728.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G12728.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	myb-related protein 306-like
Location	ctg1838: 3207701 .. 3209499 (-)
RNA-Seq Expression	Cucsat.G12728.T2
Synteny	Cucsat.G12728.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCTTGACTTTTTATTTCAACTTTAATGCTCTCTCGGCCTTTCATTTTGACTCTTTTTGTTTTTTCTTTTCTTTTCTTTTTTTTCTTCATAAGTCAGCGTCTAAAAGTTTTTGTATTTATACCCCCCCAATAATCCCTCATATTATTTCTCAACACACAACAAAACAAAGAAGAAGAAGAACAAGAAGAAGAAGAAGAACAACAACAACAACAACAAGAAGAACAAGAAGGGAAGAATTTAGGGTAAAAAAATATGGGTAGGCCTCCTTGCTGTGACAAACAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATTGTTTTGGTTTCTTATATTCAACAACATGGCCCTGGCAATTGGAGGGCTGTTCCTGCCAATACTGGTAACGAACTAACTAACTAAATTTAAAATACCTTTCTTTTTTAATTTCTTCCTTTTAATATGTTTATGTGGTTATCACTTAATTAACTTGTTGTTTTGGGTTTTAGGGTTGCTTCGATGTAGCAAGAGTTGTAGATTGAGATGGACGAATTATCTTAGACCTGGTATCAAAAGGGGTAATTTCACACACCATGAAGAGAAGATGATCGTTCACCTTCAAGCTCTTCTTGGCAATAGGTAATTACTAATATATAATAATCACTTTAATTTTTTTCAATTATCGGTCTAAATTTAGAGGAGAAACTAAAAACATTCGTAGAGGATAAATTGAAAATTGTTCCAGAGTACTGTTGATAAATTTTGAATCCATCAGCGATTTAAAAAGATATCAGAAGATGAGATTTCGTGTTTGAATGCATAATAGAGATTAAATGAAAAAATAAATGAAAATAAATTAAAGTTTTTTATTTTGAGGACTGAATTTATGATGCATTGATGATAATAATGGCAGATGGGCGGCCATAGCTTCATACCTTCCACAAAGAACAGACAATGACATTAAAAACCACTGGAACACTCATCTCAAGAAGAGGCTGAACAACCACCACCGCCAACCTTCTCCGGCAGCCGATCTCACCGCCGACCCCGCCGCCGATACTCTTTTCACCACCAGAGGCCAGTGGGAGAGACGCCTTCAAACCGACATTCAAATGGCCAAACAAGCTCTCTCCGACGCCCTCTCGCCGGAAACCTCCAAACCGCCGCCGACGCTGCTGCCGATAGAAGAGTCAAAAACATCCCATCCTCAAATTCCGGCGTATGCTTCCAGCGCGGACAACATCGCACGATGGCTAAAAGAATGGAACAAAAACCCACCGACGAACAATCCCTCCCGATCAAGCTCGTCGGCGGTGGTGGATTCCGGCGACGGCAGTGGAGGAAAAGTAAATGGGGCGGGATTATCGGAATCGATGGATACGTTGATGAGTTTAGAATATTTTGAATCGTCGAATAATTCAGATGGGTCGCCGGAGACGAGCGTTTTTCAAGGGGAAAGTGAATCGATGGATGAAAATGAAGAATTGTTGCCGATGAAATTGCTTGAGGAATGGCTTCATGGAGATTCTAAAGATTATTACTTTACTGATTTTACAGTTGATGAAAAGTTTAAGTTGGATAATCTTCTATGAAATTATAAATAAATTTGCGTTTTTTTTCTTTTTTTTCTAGTGTTTAGAGCATATTTTGGGTTAATTTTTGTTCCAAAATTAATCTCTTTGAATTTGTAAGAGATATGTATTTTATAAAGATTGATGATTTTCAAACAAGGGTCGTTAATCAAGTATAATAATAATTTTTCTCTCTTTTGTCTTTTCTTTTTTTCCATACTTGAGTTCTGAGGTGATGTTCCC

Coding sequence (CDS)

ATGGCCAAACAAGCTCTCTCCGACGCCCTCTCGCCGGAAACCTCCAAACCGCCGCCGACGCTGCTGCCGATAGAAGAGTCAAAAACATCCCATCCTCAAATTCCGGCGTATGCTTCCAGCGCGGACAACATCGCACGATGGCTAAAAGAATGGAACAAAAACCCACCGACGAACAATCCCTCCCGATCAAGCTCGTCGGCGGTGGTGGATTCCGGCGACGGCAGTGGAGGAAAAGTAAATGGGGCGGGATTATCGGAATCGATGGATACGTTGATGAGTTTAGAATATTTTGAATCGTCGAATAATTCAGATGGGTCGCCGGAGACGAGCGTTTTTCAAGGGGAAAGTGAATCGATGGATGAAAATGAAGAATTGTTGCCGATGAAATTGCTTGAGGAATGGCTTCATGGAGATTCTAAAGATTATTACTTTACTGATTTTACAGTTGATGAAAAGTTTAAGTTGGATAATCTTCTATGA

Protein sequence

MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNPSRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMDENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL

Homology

[Close]

BLAST of Cucsat.G12728.T2 vs. NCBI nr
Match: XP_004147470.1 (myb-related protein 306 [Cucumis sativus] >KGN59575.1 hypothetical protein Csa_002268 [Cucumis sativus])

HSP 1 Score: 308 bits (789), Expect = 3.09e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
           SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. NCBI nr
Match: XP_008443415.1 (PREDICTED: myb-related protein 306-like [Cucumis melo])

HSP 1 Score: 295 bits (756), Expect = 3.20e-98
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. NCBI nr
Match: KAA0053757.1 (myb-related protein 306-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (756), Expect = 4.43e-98
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. NCBI nr
Match: TYK25645.1 (myb-related protein 306-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (752), Expect = 1.79e-97
Identity = 152/158 (96.20%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL 158
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL 312

[Close]

BLAST of Cucsat.G12728.T2 vs. NCBI nr
Match: XP_038905238.1 (myb-related protein 306-like [Benincasa hispida])

HSP 1 Score: 238 bits (606), Expect = 1.34e-75
Identity = 130/159 (81.76%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQAL         KPPP  LP  ESK  H QIPAYASSADNIARWLKEWNKNPPTNNP
Sbjct: 156 MAKQAL---------KPPPPPLPAAESKAPHHQIPAYASSADNIARWLKEWNKNPPTNNP 215

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
           SRSSSS VVDSGD  GGK+NGAGLSESMDTLMS +YFESSN SDGSPETSVFQGESE MD
Sbjct: 216 SRSSSSTVVDSGDNGGGKMNGAGLSESMDTLMSFDYFESSN-SDGSPETSVFQGESE-MD 275

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           E+E+LLPMKLLEEWLHGD+KDYYF DFTVDEKFK DNLL
Sbjct: 276 ESEQLLPMKLLEEWLHGDAKDYYFADFTVDEKFKYDNLL 303

[Close]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL
Match: A0A0A0LC46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G826690 PE=4 SV=1)

HSP 1 Score: 308 bits (789), Expect = 1.50e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
           SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL
Match: A0A1S3B7Y3 (myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103487007 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 1.55e-98
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL
Match: A0A5A7UGW9 (Myb-related protein 306-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001370 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 2.14e-98
Identity = 153/159 (96.23%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 159
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNLL 313

[Close]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL
Match: A0A5D3DQ76 (Myb-related protein 306-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008080 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 8.69e-98
Identity = 152/158 (96.20%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPPTLLP+ ESKTS  QIP YASSADNIARWLKEWNKNPPTNNP
Sbjct: 155 MAKQALSDALSPETSKPPPTLLPVAESKTSQHQIPGYASSADNIARWLKEWNKNPPTNNP 214

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD
Sbjct: 215 CRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 274

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL 158
           ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL
Sbjct: 275 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKFKLDNL 312

[Close]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL
Match: A0A6J1F3U4 (myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111442135 PE=4 SV=1)

HSP 1 Score: 211 bits (537), Expect = 1.92e-65
Identity = 120/160 (75.00%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MAKQALSDALSPETSKPPPTLLPIEESKTSHPQIPAYASSADNIARWLKEWNKNPPTNNP 60
           MAKQALSDALSPETSKPPP  LP+ ES+T + QIP YASSADNIARWL+EWNKNPPTN+ 
Sbjct: 151 MAKQALSDALSPETSKPPPPPLPMAESQTPNRQIPTYASSADNIARWLEEWNKNPPTNSS 210

Query: 61  SRSSSSAVVDSGDGSGGKVNGAGLSESMDTLMSLEYFESSNNSDGSPETSVFQGESESMD 120
            RSSS  VVDSG   G KV+GAG SESMDT +  +YFESSN S+ SPETSVFQGESE MD
Sbjct: 211 CRSSSPPVVDSG---GEKVSGAGSSESMDTFLGFDYFESSN-SEVSPETSVFQGESE-MD 270

Query: 121 ENEELLPMKLLEEWLHGDSKDYYFTDFTVDEKF-KLDNLL 159
           E+E LL M+LLEEWLHGD+KDYYFTD TVDEK  K DN+L
Sbjct: 271 ESEGLLAMELLEEWLHGDAKDYYFTDITVDEKLIKYDNVL 305

The following BLAST results are available for this feature:

BLAST of Cucsat.G12728.T2 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G12728.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147470.1	3.09e-103	100.00	myb-related protein 306 [Cucumis sativus] >KGN59575.1 hypothetical protein Csa_0...	[more]
XP_008443415.1	3.20e-98	96.23	PREDICTED: myb-related protein 306-like [Cucumis melo]	[more]
KAA0053757.1	4.43e-98	96.23	myb-related protein 306-like protein [Cucumis melo var. makuwa]	[more]
TYK25645.1	1.79e-97	96.20	myb-related protein 306-like protein [Cucumis melo var. makuwa]	[more]
XP_038905238.1	1.34e-75	81.76	myb-related protein 306-like [Benincasa hispida]	[more]

BLAST of Cucsat.G12728.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC46	1.50e-103	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G826690 PE=4 SV=1	[more]
A0A1S3B7Y3	1.55e-98	96.23	myb-related protein 306-like OS=Cucumis melo OX=3656 GN=LOC103487007 PE=4 SV=1	[more]
A0A5A7UGW9	2.14e-98	96.23	Myb-related protein 306-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DQ76	8.69e-98	96.20	Myb-related protein 306-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1F3U4	1.92e-65	75.00	myb-related protein 306-like OS=Cucurbita moschata OX=3662 GN=LOC111442135 PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..116
None	No IPR available	PANTHER	PTHR10641:SF1253	SUBFAMILY NOT NAMED	coord: 1..138
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..138

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G12728	Cucsat.G12728	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12728.T2.E1	Cucsat.G12728.T2.E1	exon
Cucsat.G12728.T2.E2	Cucsat.G12728.T2.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12728.T2.C1	Cucsat.G12728.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12728.T2	Cucsat.G12728.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009733	response to auxin
biological_process	GO:0009617	response to bacterium
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding