Csor.00g303190.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g303190.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Protein IDA-like
Location	Csor_Chr18: 11641071 .. 11641328 (+)
Sequence length	258
RNA-Seq Expression	Csor.00g303190.m01
Synteny	Csor.00g303190.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTTCTTCAAACAACCCAGTCGCCATTGTTGTTCTTGCTCTGCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCGCTGAAACCGACGGGACCGGAGATGGATTCCGGCCAAGTCGGTCTCAATTACAAGACAGGGTTCCGATACCGCGGCGAAACCTTCAGCTTTCTCCCCAGAAACATTCCGATTCCTCCTTCAGCTCCTTCCGACAGGCACAACTCTGTCGTCGACTCTGTTCCTTCCAATTGA

mRNA sequence

ATGGCTTCTTCTTCTTCAAACAACCCAGTCGCCATTGTTGTTCTTGCTCTGCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCGCTGAAACCGACGGGACCGGAGATGGATTCCGGCCAAGTCGGTCTCAATTACAAGACAGGGTTCCGATACCGCGGCGAAACCTTCAGCTTTCTCCCCAGAAACATTCCGATTCCTCCTTCAGCTCCTTCCGACAGGCACAACTCTGTCGTCGACTCTGTTCCTTCCAATTGA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCAAACAACCCAGTCGCCATTGTTGTTCTTGCTCTGCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCGCTGAAACCGACGGGACCGGAGATGGATTCCGGCCAAGTCGGTCTCAATTACAAGACAGGGTTCCGATACCGCGGCGAAACCTTCAGCTTTCTCCCCAGAAACATTCCGATTCCTCCTTCAGCTCCTTCCGACAGGCACAACTCTGTCGTCGACTCTGTTCCTTCCAATTGA

Protein sequence

MASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN

Homology

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 10 VAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLPRNIPIPPS 69
          V +  +  L  S  C A   +  T  EM      L +K         F +LP+ +PIPPS
Sbjct: 9  VLLCFVLFLAASSSCVAAARIGAT-MEMKKNIKRLTFK-----NSHIFGYLPKGVPIPPS 68

Query: 70 APSDRHNSVVDSVP 84
          APS RHNS V+S+P
Sbjct: 69 APSKRHNSFVNSLP 76

[Close]

BLAST of Csor.00g303190.m01 vs. NCBI nr
Match: KAG6574002.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 4.70e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFL 60
          MASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFL
Sbjct: 1  MASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFL 60

Query: 61 PRNIPIPPSAPSDRHNSVVDSVPSN 85
          PRNIPIPPSAPSDRHNSVVDSVPSN
Sbjct: 61 PRNIPIPPSAPSDRHNSVVDSVPSN 85

[Close]

BLAST of Csor.00g303190.m01 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (276), Expect = 1.30e-29
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 2  ASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLP 61
          +SSSS++  AI VL LLL+SGFCSATRP K  G E+    +  NYKTGFRY G+TFS+LP
Sbjct: 5  SSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLP 64

Query: 62 RNIPIPPSAPSDRHNSVVDSVP 83
          R +PIPPS PSDRHNS+VDS+P
Sbjct: 65 RGVPIPPSGPSDRHNSLVDSLP 86

[Close]

BLAST of Csor.00g303190.m01 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 4.32e-29
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 2  ASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLP 61
          +SSSS++  AI VL LLL+SGFCSATRP K  G E+       NYKTGFRY G+TFS+LP
Sbjct: 10 SSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLP 69

Query: 62 RNIPIPPSAPSDRHNSVVDSVP 83
          R +PIPPS PSDRHNS+VDS+P
Sbjct: 70 RGVPIPPSGPSDRHNSLVDSLP 91

[Close]

BLAST of Csor.00g303190.m01 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_008746 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.57e-23
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 2  ASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLP 61
          +SS ++ P+ I++L LLLLSG  SATRP K       +  +  +YKT FRY G+TFSFLP
Sbjct: 4  SSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLP 63

Query: 62 RNIPIPPSAPSDRHNSVVDSVPSN 85
          + +PIPPS PSDRHNSVVDS+P N
Sbjct: 64 KGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Csor.00g303190.m01 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 8.23e-21
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 2  ASSSSN-----NPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVG-LNYKT-GFRYRG 61
          +SSSS+     N + I +L LLLLSGF SATRP    G  M+   +   NYKT  FRY G
Sbjct: 12 SSSSSSFQFKQNSIPIFILLLLLLSGFSSATRP----GGTMEFPDMSNSNYKTTAFRYAG 71

Query: 62 ETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85
          +TF FLP+ +PIPPS PSDRHNSVVDS+P N
Sbjct: 72 QTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.61e-24
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 2  ASSSSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLP 61
          +SS ++ P+ I++L LLLLSG  SATRP K       +  +  +YKT FRY G+TFSFLP
Sbjct: 4  SSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLP 63

Query: 62 RNIPIPPSAPSDRHNSVVDSVPSN 85
          + +PIPPS PSDRHNSVVDS+P N
Sbjct: 64 KGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.99e-21
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 2  ASSSSN-----NPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVG-LNYKT-GFRYRG 61
          +SSSS+     N + I +L LLLLSGF SATRP    G  M+   +   NYKT  FRY G
Sbjct: 12 SSSSSSFQFKQNSIPIFILLLLLLSGFSSATRP----GGTMEFPDMSNSNYKTTAFRYAG 71

Query: 62 ETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85
          +TF FLP+ +PIPPS PSDRHNSVVDS+P N
Sbjct: 72 QTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.45e-21
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 2   ASSSSN-----NPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVG-LNYKT-GFRYRG 61
           +SSSS+     N + I +L LLLLSGF SATRP    G  M+   +   NYKT  FRY G
Sbjct: 16  SSSSSSFQFKQNSIPIFILLLLLLSGFSSATRP----GGTMEFPDMSNSNYKTTAFRYAG 75

Query: 62  ETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85
           +TF FLP+ +PIPPS PSDRHNSVVDS+P N
Sbjct: 76  QTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL
Match: A0A5N5FKV5 (Protein IDA-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042981 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.75e-17
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 5   SSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLN-----------YKTGFRYR 64
           SS   V +V+L L LL+G C+ATR  K     +D G+V +N           ++TGFRYR
Sbjct: 13  SSCKTVFVVLLVLNLLTGSCTATRLAKTVVVRLD-GKVLMNLDHAKTFNPRKHETGFRYR 72

Query: 65  GETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85
           G+ FS+ P+  PIPPS PS RHNS VDS P N
Sbjct: 73  GQIFSYFPKGTPIPPSGPSKRHNSAVDSTPGN 103

[Close]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL
Match: A0A498IAX0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_040511 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.68e-16
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 5   SSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLN-----------YKTGFRYR 64
           SS   V +++L L LL+G C+ATR  K     +D G+  +N           ++TGFRYR
Sbjct: 13  SSCKTVFVLLLVLNLLTGSCTATRLAKTVVVRLD-GKALMNLDHAKTFNPRKHETGFRYR 72

Query: 65  GETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85
           G+ FS+ P+  PIPPS PS+RHNS VDS P N
Sbjct: 73  GQIFSYFPKGTPIPPSGPSNRHNSAVDSTPRN 103

[Close]

BLAST of Csor.00g303190.m01 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 28/74 (37.84%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 10 VAIVVLALLLLSGFCSATRPLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLPRNIPIPPS 69
          V +  +  L  S  C A   +  T  EM      L +K         F +LP+ +PIPPS
Sbjct: 9  VLLCFVLFLAASSSCVAAARIGAT-MEMKKNIKRLTFK-----NSHIFGYLPKGVPIPPS 68

Query: 70 APSDRHNSVVDSVP 84
          APS RHNS V+S+P
Sbjct: 69 APSKRHNSFVNSLP 76

[Close]

BLAST of Csor.00g303190.m01 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 41.2 bits (95), Expect = 4.9e-04
Identity = 21/75 (28.00%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 10 VAIVVLALLLLSGFCSATR--PLKPTGPEMDSGQVGLNYKTGFRYRGETFSFLPRNIPIP 69
          + + ++ LL+   + +  R  P+K +  E+   +       GF ++G  F    + + +P
Sbjct: 10 MTLYIVFLLIFGSYNATARIGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKRVLVP 69

Query: 70 PSAPSDRHNSVVDSV 83
          PS PS RHNSVV+++
Sbjct: 70 PSGPSMRHNSVVNNL 84

The following BLAST results are available for this feature:

BLAST of Csor.00g303190.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	2.8e-04	37.84	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Csor.00g303190.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574002.1	4.70e-54	100.00	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032113.1	1.30e-29	65.85	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601330.1	4.32e-29	65.85	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN52035.1	1.57e-23	57.14	hypothetical protein Csa_008746 [Cucumis sativus]	[more]
KAA0034518.1	8.23e-21	57.14	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g303190.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07	7.61e-24	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A5A7SV51	3.99e-21	57.14	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CCP4	4.45e-21	57.14	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5N5FKV5	5.75e-17	47.83	Protein IDA-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_04298...	[more]
A0A498IAX0	4.68e-16	45.65	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_040511 PE=4 SV=1	[more]

BLAST of Csor.00g303190.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	2.0e-05	37.84	Putative membrane lipoprotein	[more]
AT3G25655.1	4.9e-04	28.00	inflorescence deficient in abscission (IDA)-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..85
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 9..85
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 9..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g303190	Csor.00g303190	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g303190.m01.CDS01	Csor.00g303190.m01.CDS01	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g303190.m01.start_codon01	Csor.00g303190.m01.start_codon01	start_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g303190.m01.single01	Csor.00g303190.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g303190.m01.stop_codon01	Csor.00g303190.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g303190.m01	Csor.00g303190.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity