Csor.00g283760.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAATCTGCTTGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGACGTTCGTAGCAGCGATCCTTACGTTGTCGTCAAGATGGGAAAGCTAGTACGTATTTCTTTTCTGTTATTTCATGATCACCTTCGTTGTTGCTTCGATTTGGAGGTTTTGTTTCTTTATGTCTTTTGGAATGCTTCAAGATTGTTAAAGACATGTTGCTTTAGGTAGTAATTGGTTGAATTTGAAGCTGTTTTGGCGGTTATTTGGTGTGACTCGAAAAATGGCGCGAATGTTTGAATTGTTTTCATGGACGAAGTCTTTGAAACATGCGAGGAAGGATGGTTCGATAAGGGCTTGAAAAGTCTAATTAGATTCGCCTGTAGATTTTGCAACTTCTGGATCATCCTACACGAATGGAGATTTGGGAGGTGCAGAAATGAATGTTGTGTGGGGGAGGAGCTTAGAAGTTTTTGTATGCGAGTTTTTATCTTAAGGAATGAGATGAATAAAATTCCTGGCTGTTGAATTGTTAACTCTAAGTTTCGTAACTCTGTACGAACATCACGAGAAATTGTAGCAATAAATTGTGCTTTTTAGGCAGGTCAATCAATTACTTTGTAGATGTTAATGTTCCATTGAACTACGTCTTAGTTTTTGTTTCTTATAAGGAATGAACTCTCAAGTATTGCTGCTGCTTAATTCTTTTGTTCTTGTGAACTCTTGATGCAGAAACTGAAGACGCGGGTGATAAAGAAGGATATCAATCCTCACTGGAATGAAGATCTGACTCTTTCTGTCAGTGACCCAAGTCTTCCAATTAAGCTGGTAGTCCTTGTTAAACTCCATGATGATCCATGTATGAGAGAAATTTATTAATCAGTTTAGTTTTGTTATGCTTGTTGAACTCCATGATGATCCATGAATGCTTATTTTGTCCTTCAAAATTATATATATTTGATATGTTGCTCTGCCAGCAATGTACAACGCCTTTTAAACAATTTCCAAGTAGATACACACACAGAGTTACAAAGCTGACATGTTCTTGTTGTTGACCGATTTGTAACGGTTGATATTGCTAATCCAGGCTTAGGTCTTTTGCCATATTGTATTATGGGTTGGCCTTTATCTTTCGTTTTGTTTGATCAAAGCTATTTTAAGGAATCACTTATCTTGTTGCTATACGAGAATTAACTCCCATTACTTCCTTTTTCGTTACCGTGTTTCCTAACATCGAATTTCGTTTCCAAATTCATCTTTGAGCTGGTTACAGACTGTTTACGATCACGACACGTTTACGAAGGATGACAAAATGGGGTATGCTGAGTTTGATATCAAATCATTTACGGACGCTCTGAAAATGAACTTGAGTAATCTTCCGAGTGGAACGACGATCTCACGAATGCTACCAAGCAGGCAAAACTGTCTTGCTGAAGAGAGCTGTGTGGTCTGGAAAGATGGCAAAGTAATTCAAGATATCTACCTTAGATTGAGAAATGTTGAATGCGGGGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCACAAAGGCTGA ATGGAGAATCTGCTTGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGACGTTCGTAGCAGCGATCCTTACGTTGTCGTCAAGATGGGAAAGCTAAAACTGAAGACGCGGGTGATAAAGAAGGATATCAATCCTCACTGGAATGAAGATCTGACTCTTTCTGTCAGTGACCCAAGTCTTCCAATTAAGCTGACTGTTTACGATCACGACACGTTTACGAAGGATGACAAAATGGGGTATGCTGAGTTTGATATCAAATCATTTACGGACGCTCTGAAAATGAACTTGAGTAATCTTCCGAGTGGAACGACGATCTCACGAATGCTACCAAGCAGGCAAAACTGTCTTGCTGAAGAGAGCTGTGTGGTCTGGAAAGATGGCAAAGTAATTCAAGATATCTACCTTAGATTGAGAAATGTTGAATGCGGGGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCACAAAGGCTGA ATGGAGAATCTGCTTGGACTTCTCCGTATTCGCGTCATTCGTGGTGTCAATCTTGCTGTTCGTGACGTTCGTAGCAGCGATCCTTACGTTGTCGTCAAGATGGGAAAGCTAAAACTGAAGACGCGGGTGATAAAGAAGGATATCAATCCTCACTGGAATGAAGATCTGACTCTTTCTGTCAGTGACCCAAGTCTTCCAATTAAGCTGACTGTTTACGATCACGACACGTTTACGAAGGATGACAAAATGGGGTATGCTGAGTTTGATATCAAATCATTTACGGACGCTCTGAAAATGAACTTGAGTAATCTTCCGAGTGGAACGACGATCTCACGAATGCTACCAAGCAGGCAAAACTGTCTTGCTGAAGAGAGCTGTGTGGTCTGGAAAGATGGCAAAGTAATTCAAGATATCTACCTTAGATTGAGAAATGTTGAATGCGGGGAAGTCGAAATTCAGCTGCAGTGGATTGATCTTCCAAACCACAAAGGCTGA MENLLGLLRIRVIRGVNLAVRDVRSSDPYVVVKMGKLKLKTRVIKKDINPHWNEDLTLSVSDPSLPIKLTVYDHDTFTKDDKMGYAEFDIKSFTDALKMNLSNLPSGTTISRMLPSRQNCLAEESCVVWKDGKVIQDIYLRLRNVECGEVEIQLQWIDLPNHKG Homology
BLAST of Csor.00g283760.m01 vs. ExPASy Swiss-Prot
Match: Q9LVH4 (Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=CAR4 PE=1 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.2e-64 Identity = 118/164 (71.95%), Postives = 139/164 (84.76%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy Swiss-Prot
Match: Q9LP65 (Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana OX=3702 GN=CAR5 PE=2 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.2e-64 Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy Swiss-Prot
Match: Q9C6B7 (Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=CAR3 PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 2.2e-58 Identity = 107/164 (65.24%), Postives = 135/164 (82.32%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy Swiss-Prot
Match: Q9FHP6 (Protein C2-DOMAIN ABA-RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=CAR1 PE=1 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 6.7e-55 Identity = 102/167 (61.08%), Postives = 132/167 (79.04%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy Swiss-Prot
Match: A2X479 (GTPase activating protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07012 PE=3 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.5e-54 Identity = 96/162 (59.26%), Postives = 130/162 (80.25%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. NCBI nr
Match: KAG6589635.1 (Protein C2-DOMAIN ABA-RELATED 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023323.1 Protein C2-DOMAIN ABA-RELATED 4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 331 bits (848), Expect = 2.34e-114 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. NCBI nr
Match: XP_022987518.1 (protein C2-DOMAIN ABA-RELATED 4-like [Cucurbita maxima]) HSP 1 Score: 327 bits (838), Expect = 1.42e-112 Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. NCBI nr
Match: KAA0058139.1 (protein C2-DOMAIN ABA-RELATED 4-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 306 bits (783), Expect = 3.33e-104 Identity = 148/164 (90.24%), Postives = 159/164 (96.95%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. NCBI nr
Match: XP_038880004.1 (protein C2-DOMAIN ABA-RELATED 4-like isoform X1 [Benincasa hispida]) HSP 1 Score: 305 bits (782), Expect = 4.73e-104 Identity = 149/164 (90.85%), Postives = 158/164 (96.34%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. NCBI nr
Match: XP_008453481.1 (PREDICTED: protein C2-DOMAIN ABA-RELATED 4-like isoform X1 [Cucumis melo]) HSP 1 Score: 304 bits (778), Expect = 1.93e-103 Identity = 147/164 (89.63%), Postives = 159/164 (96.95%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy TrEMBL
Match: A0A6J1JJN7 (protein C2-DOMAIN ABA-RELATED 4-like OS=Cucurbita maxima OX=3661 GN=LOC111485060 PE=3 SV=1) HSP 1 Score: 327 bits (838), Expect = 6.88e-113 Identity = 161/164 (98.17%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy TrEMBL
Match: A0A5A7UX88 (Protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004500 PE=3 SV=1) HSP 1 Score: 306 bits (783), Expect = 1.61e-104 Identity = 148/164 (90.24%), Postives = 159/164 (96.95%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy TrEMBL
Match: A0A1S3BX57 (protein C2-DOMAIN ABA-RELATED 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494182 PE=3 SV=1) HSP 1 Score: 304 bits (778), Expect = 9.33e-104 Identity = 147/164 (89.63%), Postives = 159/164 (96.95%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy TrEMBL
Match: A0A6J1C2C6 (protein C2-DOMAIN ABA-RELATED 4-like OS=Momordica charantia OX=3673 GN=LOC111006803 PE=3 SV=1) HSP 1 Score: 295 bits (754), Expect = 4.25e-100 Identity = 143/164 (87.20%), Postives = 155/164 (94.51%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. ExPASy TrEMBL
Match: A0A6J1HMC9 (protein C2-DOMAIN ABA-RELATED 4-like OS=Cucurbita maxima OX=3661 GN=LOC111465511 PE=3 SV=1) HSP 1 Score: 294 bits (752), Expect = 8.57e-100 Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. TAIR 10
Match: AT1G48590.1 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 247.3 bits (630), Expect = 8.6e-66 Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. TAIR 10
Match: AT1G48590.2 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 247.3 bits (630), Expect = 8.6e-66 Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. TAIR 10
Match: AT3G17980.1 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 247.3 bits (630), Expect = 8.6e-66 Identity = 118/164 (71.95%), Postives = 139/164 (84.76%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. TAIR 10
Match: AT1G73580.1 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59 Identity = 107/164 (65.24%), Postives = 135/164 (82.32%), Query Frame = 0
BLAST of Csor.00g283760.m01 vs. TAIR 10
Match: AT5G37740.1 (Calcium-dependent lipid-binding (CaLB domain) family protein ) HSP 1 Score: 214.9 bits (546), Expect = 4.7e-56 Identity = 102/167 (61.08%), Postives = 132/167 (79.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|