Csor.00g263690.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g263690.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	photosystem I assembly factor PSA3, chloroplastic
Location	Csor_Chr11: 12752429 .. 12754565 (-)
Sequence length	861
RNA-Seq Expression	Csor.00g263690.m01
Synteny	Csor.00g263690.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGACTTCAACTTCCACTACATCTTCTTTCCACTCCAATCCCAAATCCTTCTTCCTCTCTAGCCTGATTTCGCCTCCTAAGTTCCTTCACCGGCAATTCCATGGTTCCGTCGGCCGCCGCCGGCATCCGACTTCGACGGGAGTGCTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGATTTGCGAATAAGGTGATCGGCTCTCTGCCGGTAGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTCGCGGAGTTTCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGACTTTCAAGAACGGAGGGGCAAGGTAATGCATATTAATATATATTTTTTTTCTTAATATTTTAAATTATACTGTTAGAGTTAACGTGGAAGCCTCATTTTAATCGCTTTAGTTTACAATGGATTACCATTTTAAGACTTTAAAATTAATTTATGTCCTATTAAGTTTTTAAAAAAATTTTAAATTTCAATGGATAGATTAGATATAAGTATGAATGTTATATCTAATAGAACTATTAAATGTAATATTACCTGTTCTAGTATATTTATGAACTATTAAATTTAATATTACCTGTTCTATTAATTTTTCAAGATTCAAGTCTGAATTTATAATATATAAACTATTATAGTTATAGAGTAAAAGATAAAATTAATAGATCGTCAGAATGATAATAAGTGCCGTGTTCATTAAGTTGTATGACTATTTTTCTTTCCAAAGAAAACTTCAAAAAGAAAAAAAAAAAAAAAAAAGGTTAAATTGTCATGAACTTAAGTTTTAGTATGTTCTTAAATTTTCATGTTCGTGTTTAGAAGGTCTCTAAAATTTAAAAAGTATTGAGTAAATTCCTAAAATCTTGTTCTTGTGTCAATGTTCGTGACCCATTAACATTTTCTAAAATTCATGAATCTATTTGACATAAAATTGAAAGTTTAATATTCTATTAGATACGAAATTCAATTTTTGTCGAATAGATTTGTTAATGTTTAGATATACAAAATTTAAAGCTAGAAACTATGTTTGACATCTTAAGAATTATACATAATAATTCATCAACTTTTTTTTTAAAATTAAGTGTAAATGATAACATTTTGAAGTTGAATATTTGGTTGTGGCAGCCAGGAGAGCCTTTGTTCGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAAGAGATTTTGGAAGGAGTAGCAAGGCTGAGGATTTCAGATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAACGAGGCTAGAGAGGTATGCTATTCTCATCTTTTGATCTTCAATTTTTCGATTTATTCTATTTTCATTCTTGAAATGTCTGAATTAGATTTGGTTGCATATCTTGAAACGAAATAATTGTTAGGAACGACGACGTGATTTGTGAAATCCCACGTCGATTGGGGAGGAGAATGAAACACCCTTAATAAGGGTGTGGAAACCTTTCCCTAGCAGACGTTTTAAAAACCTTGAGAGGAAGCCCAAAGAGAACAATATCTGCTAGCTGTGGGCTTGGACTGTTACATGATTTCACTTTAATCTTAAAAAATTTATAGTCTCTTTTCACTCTTCGCACTTACGTGCTAGAATCATGCTTCAAAGTGGCTAAAAAGACCCATTGATTTTGATAACTTTTTGGATCTATTAATAACTGTCATCGTTTGGTTCGTCTTAGAAACTATTAACAATTAGTACTCTATACGTTTGACATTCCTTCGTAGAAACGAGAGAAACTAAAAGTTGCTGTTCCGAAAATACCAATGGAGGTTCGAGTTGAGAAAGCTCTCGATGCCATTTATGTTTGTTCATTTGGAAGAGATCCAATAGAGGAAGATGATGAGAAACTCCTAGTGATTATGCTGAGTTCTGTTTTTCCAACTGTTGGGCAATCTGAGATTCAAAGGATTGTTAAAGAAAAGGCTGTTAGAATTGCTGAAGGAAAGGACATTGCCATTGTTCCTGAGCCACAACCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAAGACCTCCAATTCCTTCAAGAGAATAGTGAGACATGA

mRNA sequence

ATGGCTGTGACTTCAACTTCCACTACATCTTCTTTCCACTCCAATCCCAAATCCTTCTTCCTCTCTAGCCTGATTTCGCCTCCTAAGTTCCTTCACCGGCAATTCCATGGTTCCGTCGGCCGCCGCCGGCATCCGACTTCGACGGGAGTGCTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGATTTGCGAATAAGGTGATCGGCTCTCTGCCGGTAGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTCGCGGAGTTTCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGACTTTCAAGAACGGAGGGGCAAGCCAGGAGAGCCTTTGTTCGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAAGAGATTTTGGAAGGAGTAGCAAGGCTGAGGATTTCAGATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAACGAGGCTAGAGAGAAACGAGAGAAACTAAAAGTTGCTGTTCCGAAAATACCAATGGAGGTTCGAGTTGAGAAAGCTCTCGATGCCATTTATGTTTGTTCATTTGGAAGAGATCCAATAGAGGAAGATGATGAGAAACTCCTAGTGATTATGCTGAGTTCTGTTTTTCCAACTGTTGGGCAATCTGAGATTCAAAGGATTGTTAAAGAAAAGGCTGTTAGAATTGCTGAAGGAAAGGACATTGCCATTGTTCCTGAGCCACAACCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAAGACCTCCAATTCCTTCAAGAGAATAGTGAGACATGA

Coding sequence (CDS)

ATGGCTGTGACTTCAACTTCCACTACATCTTCTTTCCACTCCAATCCCAAATCCTTCTTCCTCTCTAGCCTGATTTCGCCTCCTAAGTTCCTTCACCGGCAATTCCATGGTTCCGTCGGCCGCCGCCGGCATCCGACTTCGACGGGAGTGCTGTCCGTTAGGGCTTACATGGAGAATCCGAACTCTCTGTCGGGATTTGCGAATAAGGTGATCGGCTCTCTGCCGGTAGTCGGACTGATCGCGAGGATTCTGAGCGACGAAGGCGGCGTCGGCAGCGACATTATCGATTTCGCGGAGTTTCGGAGACGAGTTGGGAAGAAATGTACGATTATGGATTCTAAAGCCTTCTATGACTTTCAAGAACGGAGGGGCAAGCCAGGAGAGCCTTTGTTCGTTCTATTGTGCTGTTGGCTGGCAGCTGTGGGAGCTGGTTTGCTTAAATCAGAAGAGATTTTGGAAGGAGTAGCAAGGCTGAGGATTTCAGATGATATTGAATTTGAAGAGGAGACTTTCCTTGCTATGATGAACGAGGCTAGAGAGAAACGAGAGAAACTAAAAGTTGCTGTTCCGAAAATACCAATGGAGGTTCGAGTTGAGAAAGCTCTCGATGCCATTTATGTTTGTTCATTTGGAAGAGATCCAATAGAGGAAGATGATGAGAAACTCCTAGTGATTATGCTGAGTTCTGTTTTTCCAACTGTTGGGCAATCTGAGATTCAAAGGATTGTTAAAGAAAAGGCTGTTAGAATTGCTGAAGGAAAGGACATTGCCATTGTTCCTGAGCCACAACCTTTGTCAAAAGAAGCTATTTTAGCTCAAATGAAAGACCTCCAATTCCTTCAAGAGAATAGTGAGACATGA

Protein sequence

MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAREKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET

Homology

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy Swiss-Prot
Match: Q9M3C6 (Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA3 PE=1 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.3e-85
Identity = 170/284 (59.86%), Postives = 210/284 (73.94%), Query Frame = 0


Query: 3   VTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTG--VLSVRAYMENP 62
           V  T  ++SFH    SFF   L +P          S      P   G   LS+RAY+E P
Sbjct: 2   VVVTHISTSFHQISPSFFHLRLRNP----------STTSSSRPKLDGGFALSIRAYIEKP 61

Query: 63  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 122
           NS S FANKVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  DS+AFY+FQ
Sbjct: 62  NSFSTFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQ 121

Query: 123 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 182
           +RRGK GEPL+VLLCCW+AAVGAGLLKSEEILEGV R+ IS+D+EFEE+ F+A+M EAR+
Sbjct: 122 QRRGKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQ 181

Query: 183 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 242
           +R KL +  P IPME+RVEKAL+ IY C F R  IEE+DEKLL +ML +VFP+V +SEI+
Sbjct: 182 RRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIE 241

Query: 243 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENS 285
           RI+KEKA R+ EG +   V   + L KEAI  QMKDL+FLQ+ +
Sbjct: 242 RIIKEKATRVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy Swiss-Prot
Match: B4FSG1 (Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-81
Identity = 154/249 (61.85%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 36  HGSVGRRRHPTSTGVLSVRAYME-NPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDI 95
           HG   RRR+       +V AYME NPNS +  A +++G+LP+VGL+ARIL+DEGGVG DI
Sbjct: 25  HGRCRRRRY------RAVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDI 84

Query: 96  IDFAEFRRRVGKKCTIMDSKAFYDFQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEG 155
           IDFAEFRRRV KKCT+MDSKAFYDF +RRGKPG+P +VLLCCWLAA+GAGLLK+EEILEG
Sbjct: 85  IDFAEFRRRVSKKCTVMDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEG 144

Query: 156 VARLRISDDIEFEEETFLAMMNEAREKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDP 215
           VARLRIS+DIEFEEETF+ MM  A+EKR KLK   P+IPME R EKAL+AIYVC FG+D 
Sbjct: 145 VARLRISNDIEFEEETFIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDM 204

Query: 216 IEEDDEKLLVIMLSSVFPTVGQSEIQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQM 275
           +E++DEKLL  +L++VFP+VG++ ++R+V   A ++A G+      + + +SKE    Q+
Sbjct: 205 VEDEDEKLLRAILNAVFPSVGRAAVERMVASMAKQVASGER---KRDGRTVSKEVQQRQL 264

Query: 276 KDLQFLQEN 284
           KDL+FL++N
Sbjct: 265 KDLEFLKQN 264

[Close]

BLAST of Csor.00g263690.m01 vs. NCBI nr
Match: KAG6588962.1 (Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 551 bits (1419), Expect = 2.38e-197
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET
Sbjct: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Csor.00g263690.m01 vs. NCBI nr
Match: KAG7022731.1 (hypothetical protein SDJN02_16466 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547 bits (1409), Expect = 7.97e-196
Identity = 284/286 (99.30%), Postives = 285/286 (99.65%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFLSSLISPPK LHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEE+DEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEEDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET
Sbjct: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Csor.00g263690.m01 vs. NCBI nr
Match: XP_022928115.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 545 bits (1403), Expect = 6.54e-195
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFL SLISPPK LHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLYSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFL+ENSET
Sbjct: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLRENSET 286

[Close]

BLAST of Csor.00g263690.m01 vs. NCBI nr
Match: XP_023530868.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 540 bits (1391), Expect = 4.42e-193
Identity = 280/286 (97.90%), Postives = 283/286 (98.95%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFLSSLISPPK LHR+FHGSVGRRRHP STGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKLLHRKFHGSVGRRRHPNSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVL+CCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLMCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAV KIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQ+EIQ
Sbjct: 181 KREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQTEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET
Sbjct: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Csor.00g263690.m01 vs. NCBI nr
Match: XP_022989166.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 537 bits (1384), Expect = 5.15e-192
Identity = 280/286 (97.90%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFLSSLISPPK LHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEI EGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEIFEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAV KIPMEVRVEKALDAIYVCSFGRDPIEE DEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEHDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           R+VKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENS T
Sbjct: 241 RMVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSGT 286

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL
Match: A0A6J1EQR9 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435039 PE=4 SV=1)

HSP 1 Score: 545 bits (1403), Expect = 3.17e-195
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFL SLISPPK LHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLYSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFL+ENSET
Sbjct: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLRENSET 286

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL
Match: A0A6J1JJA4 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486319 PE=4 SV=1)

HSP 1 Score: 537 bits (1384), Expect = 2.49e-192
Identity = 280/286 (97.90%), Postives = 281/286 (98.25%), Query Frame = 0


Query: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60
           MAVTSTSTTSSFHSNPKSFFLSSLISPPK LHRQFHGSVGRRRHPTSTGVLSVRAYMENP
Sbjct: 1   MAVTSTSTTSSFHSNPKSFFLSSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMENP 60

Query: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120
           NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ
Sbjct: 61  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 120

Query: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 180
           ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEI EGVARLRISDDIEFEEETFLAMMNEARE
Sbjct: 121 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEIFEGVARLRISDDIEFEEETFLAMMNEARE 180

Query: 181 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 240
           KREKLKVAV KIPMEVRVEKALDAIYVCSFGRDPIEE DEKLLVIMLSSVFPTVGQSEIQ
Sbjct: 181 KREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEHDEKLLVIMLSSVFPTVGQSEIQ 240

Query: 241 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           R+VKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENS T
Sbjct: 241 RMVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSGT 286

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL
Match: A0A0A0LCC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1)

HSP 1 Score: 466 bits (1198), Expect = 5.08e-164
Identity = 245/288 (85.07%), Postives = 267/288 (92.71%), Query Frame = 0


Query: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISP-PKFLHRQFHGSVGRRRHPTSTGVLSVRAYME 60
           M+VTSTSTTSS  HSNPK FFLS+ ISP P FL + +    GRRR+P S G  S++AYME
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLY----GRRRNPNSAGAFSIKAYME 60

Query: 61  NPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYD 120
           +PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+
Sbjct: 61  SPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYE 120

Query: 121 FQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEA 180
           FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEA
Sbjct: 121 FQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEA 180

Query: 181 REKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSE 240
           REKREKLK AVP IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ E
Sbjct: 181 REKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIE 240

Query: 241 IQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           IQRI+KEKA+RIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQEN+ET
Sbjct: 241 IQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 284

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL
Match: A0A5D3CQC9 (Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00270 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 7.22e-164
Identity = 244/287 (85.02%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60
           M+VTSTSTTSS  HSNPKSFFLS+ ISP +    Q +G   RRR   S G  S++AYMEN
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYG---RRRSSNSAGAFSIKAYMEN 60

Query: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120
           PNSLSGFA+KVIGSLPVVGLIARI+SDEGGVGSD+IDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEF 120

Query: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETF+AMMNEAR
Sbjct: 121 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAR 180

Query: 181 EKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEI 240
           EKREKLK AVP IPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 240

Query: 241 QRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           QRIVKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE +ET
Sbjct: 241 QRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL
Match: A0A1S3B876 (uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=4 SV=1)

HSP 1 Score: 465 bits (1197), Expect = 7.22e-164
Identity = 244/287 (85.02%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60
           M+VTSTSTTSS  HSNPKSFFLS+ ISP +    Q +G   RRR   S G  S++AYMEN
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYG---RRRSSNSAGAFSIKAYMEN 60

Query: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120
           PNSLSGFA+KVIGSLPVVGLIARI+SDEGGVGSD+IDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEF 120

Query: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETF+AMMNEAR
Sbjct: 121 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAR 180

Query: 181 EKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEI 240
           EKREKLK AVP IPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 240

Query: 241 QRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286
           QRIVKEKA+RIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQE +ET
Sbjct: 241 QRIVKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Csor.00g263690.m01 vs. TAIR 10
Match: AT3G55250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 315.1 bits (806), Expect = 5.9e-86
Identity = 170/284 (59.86%), Postives = 210/284 (73.94%), Query Frame = 0


Query: 3   VTSTSTTSSFHSNPKSFFLSSLISPPKFLHRQFHGSVGRRRHPTSTG--VLSVRAYMENP 62
           V  T  ++SFH    SFF   L +P          S      P   G   LS+RAY+E P
Sbjct: 2   VVVTHISTSFHQISPSFFHLRLRNP----------STTSSSRPKLDGGFALSIRAYIEKP 61

Query: 63  NSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDFQ 122
           NS S FANKVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  DS+AFY+FQ
Sbjct: 62  NSFSTFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQ 121

Query: 123 ERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEARE 182
           +RRGK GEPL+VLLCCW+AAVGAGLLKSEEILEGV R+ IS+D+EFEE+ F+A+M EAR+
Sbjct: 122 QRRGKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQ 181

Query: 183 KREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEIQ 242
           +R KL +  P IPME+RVEKAL+ IY C F R  IEE+DEKLL +ML +VFP+V +SEI+
Sbjct: 182 RRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIE 241

Query: 243 RIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENS 285
           RI+KEKA R+ EG +   V   + L KEAI  QMKDL+FLQ+ +
Sbjct: 242 RIIKEKATRVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

The following BLAST results are available for this feature:

BLAST of Csor.00g263690.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3C6	8.3e-85	59.86	Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B4FSG1	1.1e-81	61.85	Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE...	[more]

BLAST of Csor.00g263690.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588962.1	2.38e-197	100.00	Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG7022731.1	7.97e-196	99.30	hypothetical protein SDJN02_16466 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928115.1	6.54e-195	98.95	photosystem I assembly factor PSA3, chloroplastic [Cucurbita moschata]	[more]
XP_023530868.1	4.42e-193	97.90	photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022989166.1	5.15e-192	97.90	photosystem I assembly factor PSA3, chloroplastic [Cucurbita maxima]	[more]

BLAST of Csor.00g263690.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQR9	3.17e-195	98.95	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JJA4	2.49e-192	97.90	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0LCC2	5.08e-164	85.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1	[more]
A0A5D3CQC9	7.22e-164	85.02	Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B876	7.22e-164	85.02	uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=...	[more]

BLAST of Csor.00g263690.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55250.1	5.9e-86	59.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037736	Photosystem I assembly factor PSA3	PANTHER	PTHR36770	PHOTOSYSTEM I ASSEMBLY FACTOR PSA3, CHLOROPLASTIC	coord: 41..286

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g263690	Csor.00g263690	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.CDS01	Csor.00g263690.m01.CDS01	CDS
Csor.00g263690.m01.CDS02	Csor.00g263690.m01.CDS02	CDS
Csor.00g263690.m01.CDS03	Csor.00g263690.m01.CDS03	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.stop_codon01	Csor.00g263690.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.terminal01	Csor.00g263690.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.intron01	Csor.00g263690.m01.intron01	intron
Csor.00g263690.m01.intron02	Csor.00g263690.m01.intron02	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.internal01	Csor.00g263690.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.initial01	Csor.00g263690.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01.start_codon01	Csor.00g263690.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g263690.m01	Csor.00g263690.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0098572	stromal side of plastid thylakoid membrane