Csor.00g251340.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g251340.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 10773848 .. 10774197 (-)
Sequence length	267
RNA-Seq Expression	Csor.00g251340.m01
Synteny	Csor.00g251340.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACGACGGAGCAAAAAACAAAGAAAACGGTCTTATTTTAAGTTTCTTTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACCATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTGCCGCCACCGCCGCCGCCGCCACCACCACCGTCTATAATGTGTCTTCTTAA

Protein sequence

MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTAATAAAATTTVYNVSS

Homology

[Close]

BLAST of Csor.00g251340.m01 vs. NCBI nr
Match: KAG6597600.1 (hypothetical protein SDJN03_10780, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029043.1 hypothetical protein SDJN02_10226 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (434), Expect = 1.18e-53
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88
          MWSILDKTNSTTAATAAAATTTVYNVSS
Sbjct: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88

[Close]

BLAST of Csor.00g251340.m01 vs. NCBI nr
Match: XP_022935724.1 (uncharacterized protein LOC111442547 [Cucurbita moschata])

HSP 1 Score: 160 bits (406), Expect = 2.14e-49
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88
          MWSILDKTNSTT A AAA T+TVYNVSS
Sbjct: 61 MWSILDKTNSTTTA-AAATTSTVYNVSS 87

[Close]

BLAST of Csor.00g251340.m01 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 128 bits (321), Expect = 8.78e-36
Identity = 67/77 (87.01%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTI SP RKACTIFNQ PRD KKSHSDS  EQEKRVDVRDLQGEVMACGYEDV V
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDS--EQEKRVDVRDLQGEVMACGYEDVHV 117

Query: 61  MWSILDKTNSTTAATAA 77
           MWSILDK NS  AATAA
Sbjct: 118 MWSILDKANSGAAATAA 132

[Close]

BLAST of Csor.00g251340.m01 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo] >KAG6582137.1 hypothetical protein SDJN03_22139, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (313), Expect = 2.68e-35
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KKS SDS  EQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAA 77
          MWSILDK NSTT A  A
Sbjct: 61 MWSILDKANSTTTAATA 75

[Close]

BLAST of Csor.00g251340.m01 vs. NCBI nr
Match: XP_038898749.1 (uncharacterized protein LOC120086267 [Benincasa hispida])

HSP 1 Score: 122 bits (305), Expect = 4.57e-34
Identity = 68/88 (77.27%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+ RD KKSHSDS  EQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88
          MWSILDK NS      A ATT   NVSS
Sbjct: 61 MWSILDKANSI-----ATATTITCNVSS 81

[Close]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL
Match: A0A6J1F683 (uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC111442547 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 1.04e-49
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60

Query: 61 MWSILDKTNSTTAATAAAATTTVYNVSS 88
          MWSILDKTNSTT A AAA T+TVYNVSS
Sbjct: 61 MWSILDKTNSTTTA-AAATTSTVYNVSS 87

[Close]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 4.25e-36
Identity = 67/77 (87.01%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
           MASWKKTI SP RKACTIFNQ PRD KKSHSDS  EQEKRVDVRDLQGEVMACGYEDV V
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDS--EQEKRVDVRDLQGEVMACGYEDVHV 117

Query: 61  MWSILDKTNSTTAATAA 77
           MWSILDK NS  AATAA
Sbjct: 118 MWSILDKANSGAAATAA 132

[Close]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.30e-35
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQHPRD KKS SDS  EQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILDKTNSTTAATAA 77
          MWSILDK NSTT A  A
Sbjct: 61 MWSILDKANSTTTAATA 75

[Close]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 1.87e-33
Identity = 68/84 (80.95%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSHSDS  EQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNSTTAATAAAATTTV 83
          MWSILD K NS  AAT A AT  V
Sbjct: 61 MWSILDHKANS--AATTATATCNV 80

[Close]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 1.87e-33
Identity = 68/84 (80.95%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI SP RKACTIFNQ+PRD KKSHSDS  EQEKRVDVR+LQGEVMACGYEDV V
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60

Query: 61 MWSILD-KTNSTTAATAAAATTTV 83
          MWSILD K NS  AAT A AT  V
Sbjct: 61 MWSILDHKANS--AATTATATCNV 80

[Close]

BLAST of Csor.00g251340.m01 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSEQEKRVDVRDLQGEVMACGYEDVQV 60
          MASWKKTI +P +KA T FNQ  + ++ +++ +  E EKR  V++LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKTNST 72
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

[Close]

BLAST of Csor.00g251340.m01 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKS-----HSDSDSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +P +KA T FNQ  +  KK       + +  E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNST 72
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

The following BLAST results are available for this feature:

BLAST of Csor.00g251340.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g251340.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597600.1	1.18e-53	100.00	hypothetical protein SDJN03_10780, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935724.1	2.14e-49	95.45	uncharacterized protein LOC111442547 [Cucurbita moschata]	[more]
XP_022138108.1	8.78e-36	87.01	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_022980000.1	2.68e-35	84.42	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]
XP_038898749.1	4.57e-34	77.27	uncharacterized protein LOC120086267 [Benincasa hispida]	[more]

BLAST of Csor.00g251340.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F683	1.04e-49	95.45	uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]
A0A6J1CC51	4.25e-36	87.01	uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1IUX8	1.30e-35	84.42	uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526...	[more]
A0A5A7U9W0	1.87e-33	80.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AXS6	1.87e-33	80.95	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g251340.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48330.1	1.8e-17	59.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G17580.1	2.0e-16	57.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..43
None	No IPR available	PANTHER	PTHR33181:SF43	SUBFAMILY NOT NAMED	coord: 1..73
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g251340	Csor.00g251340	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.CDS02	Csor.00g251340.m01.CDS02	CDS
Csor.00g251340.m01.CDS01	Csor.00g251340.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.terminal01	Csor.00g251340.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.stop_codon01	Csor.00g251340.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.intron01	Csor.00g251340.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.initial01	Csor.00g251340.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01.start_codon01	Csor.00g251340.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g251340.m01	Csor.00g251340.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane