Csor.00g246880.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g246880.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Copper transporter
Location	Csor_Chr06: 1348904 .. 1349377 (+)
Sequence length	474
RNA-Seq Expression	Csor.00g246880.m01
Synteny	Csor.00g246880.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCTCTGAAAACGACGTCTCACCACAACCTCGGCGCCGTTCCGCCACCGGCGGTGGAGTCCAATCCCGCCACGACAAACAATGCCGGGAAGACGGTGGTGCATAAGACATTATACTGGGGCCACGATGCTCAAGTCCTGTTCACCGGCTGGCCCGGTACCAACTCCGCTATGTACGCATTGGCGGTGATTTTCGTGTTCGTTTTGGCGGTGTTCGTGGAATGGCTTACTTATTTAAACTTCATGAAGGAAAGCGCCGACAATGTGTTGACGGTGGTGCTGCAGACCGCGATACACACAGTACGTACTGGTTTGAACTATATGGTGATATTATCAGTGATGTCGTTCAACGGCGGGATCTTCCTGGCGGCGGTCGGTGGCCACGCAGTGGGCTTCGTTCTCTTCAGAGCCCGAGCCAAAAGAAAGGCCGAGTCCGATTCCCCCAAGCCCAATGGACCATTAACATTCTAA

mRNA sequence

ATGATGGCTCTGAAAACGACGTCTCACCACAACCTCGGCGCCGTTCCGCCACCGGCGGTGGAGTCCAATCCCGCCACGACAAACAATGCCGGGAAGACGGTGGTGCATAAGACATTATACTGGGGCCACGATGCTCAAGTCCTGTTCACCGGCTGGCCCGGTACCAACTCCGCTATGTACGCATTGGCGGTGATTTTCGTGTTCGTTTTGGCGGTGTTCGTGGAATGGCTTACTTATTTAAACTTCATGAAGGAAAGCGCCGACAATGTGTTGACGGTGGTGCTGCAGACCGCGATACACACAGTACGTACTGGTTTGAACTATATGGTGATATTATCAGTGATGTCGTTCAACGGCGGGATCTTCCTGGCGGCGGTCGGTGGCCACGCAGTGGGCTTCGTTCTCTTCAGAGCCCGAGCCAAAAGAAAGGCCGAGTCCGATTCCCCCAAGCCCAATGGACCATTAACATTCTAA

Coding sequence (CDS)

ATGATGGCTCTGAAAACGACGTCTCACCACAACCTCGGCGCCGTTCCGCCACCGGCGGTGGAGTCCAATCCCGCCACGACAAACAATGCCGGGAAGACGGTGGTGCATAAGACATTATACTGGGGCCACGATGCTCAAGTCCTGTTCACCGGCTGGCCCGGTACCAACTCCGCTATGTACGCATTGGCGGTGATTTTCGTGTTCGTTTTGGCGGTGTTCGTGGAATGGCTTACTTATTTAAACTTCATGAAGGAAAGCGCCGACAATGTGTTGACGGTGGTGCTGCAGACCGCGATACACACAGTACGTACTGGTTTGAACTATATGGTGATATTATCAGTGATGTCGTTCAACGGCGGGATCTTCCTGGCGGCGGTCGGTGGCCACGCAGTGGGCTTCGTTCTCTTCAGAGCCCGAGCCAAAAGAAAGGCCGAGTCCGATTCCCCCAAGCCCAATGGACCATTAACATTCTAA

Protein sequence

MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF

Homology

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-28
Identity = 60/116 (51.72%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 33  TVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEWL---TYLNFMKESADN 92
           +++H T YWG++ QVLF+GWPG++  MYALA+IFVF LA   EWL   +  + +K+ AD 
Sbjct: 28  SLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADK 87

Query: 93  VLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAE 146
           +  V  +TA++TV++G +Y+VIL+V+SFNGG+FLAA+ GHA+GF +FR RA R  +
Sbjct: 88  LAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27
Identity = 66/155 (42.58%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 9   HHNLGAVPPP--AVESNPATTNNAG-----------KTVVHKTLYWGHDAQVLFTGWPGT 68
           H ++  +P P  +  S+P++  N G           K ++H T +WG + +VLF+GWPGT
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  NSAMYALAVIFVFVLAVFVEWLTYLNFMKES---ADNVLTVVLQTAIHTVRTGLNYMVIL 128
           +S MYAL +IFVF LAV  EWL + + ++ S   + N    ++QTA++T+R GL Y+V+L
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 SVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAESD 148
           +VMSFN G+FL A+ GHAVGF+LF ++  R    D
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDD 157

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-26
Identity = 60/136 (44.12%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 17  PPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEW 76
           PP+  S+     N+   ++H T +WG + ++LF+GWPGT+  MY L +I VF+LAV VEW
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 77  LTYLNFMK-ESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVL 136
           L + + ++   + +    ++QTA++T++TGL Y+V+L+VMSFNGG+F+ A+ G AVGF+L
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFML 126

Query: 137 FRARAKRKAESDSPKP 152
           F + A  K  SD  KP
Sbjct: 127 FGSTA-FKNPSDDEKP 141

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.2e-26
Identity = 58/141 (41.13%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 9   HHNLGAVPPPAVESNPATTNNA-GKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFV 68
           H ++  +PPP+  S+  + +      ++H T +WG + +VLF+GWPGT+S MYAL +I +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAVFVEWLTYLNFMKES-ADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAV 128
           F+LAV  EWL +   ++ S + N    + QTA++T++TGL+Y+V+L+VMSFN G+F+ A+
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHAVGFVLFRARAKRKAESD 148
            G+ VGF LF +   +K   D
Sbjct: 123 AGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot
Match: Q94EE4 (Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 10  HNLGAVPPPAVESNPATTNNAGKTV--VHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFV 69
           H++G + PPA  +       A K++   H T +WG +++VLFT WPGT   MYALA+IFV
Sbjct: 6   HDMGGMSPPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFV 65

Query: 70  FVLAVFVEWLTYLNFMKESADNVLTV----------VLQTAIHTVRTGLNYMVILSVMSF 129
           F LAV VE+L         AD  L            + + A+HTVR G+ Y+++L++MSF
Sbjct: 66  FALAVIVEFLG-----SRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSF 125

Query: 130 NGGIFLAAVGGHAVGFVLFRA 139
           NGG+FL AV GHA GF+ FRA
Sbjct: 126 NGGVFLVAVAGHAAGFLAFRA 141

[Close]

BLAST of Csor.00g246880.m01 vs. NCBI nr
Match: KAG6596378.1 (Copper transporter 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (797), Expect = 8.27e-107
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY
Sbjct: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG
Sbjct: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF
Sbjct: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157

[Close]

BLAST of Csor.00g246880.m01 vs. NCBI nr
Match: KAG7027927.1 (Copper transporter 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309 bits (792), Expect = 4.62e-106
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 61
           MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA
Sbjct: 1   MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 60

Query: 62  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI 121
           LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI
Sbjct: 61  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI 120

Query: 122 FLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           FLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF
Sbjct: 121 FLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 156

[Close]

BLAST of Csor.00g246880.m01 vs. NCBI nr
Match: XP_022941866.1 (copper transporter 4-like [Cucurbita moschata])

HSP 1 Score: 304 bits (779), Expect = 4.60e-104
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLGAVPPPAVE+NPATTNNAGKTVVHKTLYWGHDAQVLFTGWP TNSAMY
Sbjct: 1   MMALKTTSHHNLGAVPPPAVETNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPSTNSAMY 60

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIH VRTGLNYMVILSVMSFNGG
Sbjct: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGG 120

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           IFLAAVGGHAVGFVLFRARAKRKA+SDSPKPNGPLTF
Sbjct: 121 IFLAAVGGHAVGFVLFRARAKRKAKSDSPKPNGPLTF 157

[Close]

BLAST of Csor.00g246880.m01 vs. NCBI nr
Match: XP_023540707.1 (copper transporter 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (765), Expect = 5.66e-102
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLGAVPPPAVE+NPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY
Sbjct: 1   MMALKTTSHHNLGAVPPPAVETNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMK+SADNVLTVVLQTAIH VRTGLNYMVILSVMSFNGG
Sbjct: 61  ALAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGG 120

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGP 154
           IFLAAVGGHAVGFVLFRAR KRKAESDSPKPNGP
Sbjct: 121 IFLAAVGGHAVGFVLFRARVKRKAESDSPKPNGP 154

[Close]

BLAST of Csor.00g246880.m01 vs. NCBI nr
Match: XP_022971334.1 (copper transporter 6-like [Cucurbita maxima])

HSP 1 Score: 296 bits (759), Expect = 7.83e-100
Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLG VPPPAVESNPA TNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY
Sbjct: 80  MMALKTTSHHNLGGVPPPAVESNPANTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 139

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMK+SADNVLTVVLQ+AIH VRTGL YMV+LSVMSFNGG
Sbjct: 140 ALAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGG 199

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           IFLAAVGGHAVGFVLFR RA+RKAESDSPKPNGPLTF
Sbjct: 200 IFLAAVGGHAVGFVLFRGRAERKAESDSPKPNGPLTF 236

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL
Match: A0A6J1FMA0 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 2.23e-104
Identity = 153/157 (97.45%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLGAVPPPAVE+NPATTNNAGKTVVHKTLYWGHDAQVLFTGWP TNSAMY
Sbjct: 1   MMALKTTSHHNLGAVPPPAVETNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPSTNSAMY 60

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIH VRTGLNYMVILSVMSFNGG
Sbjct: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGG 120

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           IFLAAVGGHAVGFVLFRARAKRKA+SDSPKPNGPLTF
Sbjct: 121 IFLAAVGGHAVGFVLFRARAKRKAKSDSPKPNGPLTF 157

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL
Match: A0A6J1I894 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1)

HSP 1 Score: 296 bits (759), Expect = 3.79e-100
Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 0


Query: 1   MMALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 60
           MMALKTTSHHNLG VPPPAVESNPA TNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY
Sbjct: 80  MMALKTTSHHNLGGVPPPAVESNPANTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMY 139

Query: 61  ALAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGG 120
           ALAVIFVFVLAVFVEWLTYLNFMK+SADNVLTVVLQ+AIH VRTGL YMV+LSVMSFNGG
Sbjct: 140 ALAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGG 199

Query: 121 IFLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLTF 157
           IFLAAVGGHAVGFVLFR RA+RKAESDSPKPNGPLTF
Sbjct: 200 IFLAAVGGHAVGFVLFRGRAERKAESDSPKPNGPLTF 236

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL
Match: A0A6J1CV92 (Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1)

HSP 1 Score: 245 bits (625), Expect = 7.62e-81
Identity = 125/155 (80.65%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 2   MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 61
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 11  LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 70

Query: 62  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI 121
           LAVIFVFVLAV VEWLTY NFMK+SA++V   VLQTAIH VRTGL+YMV+LSVMSFNGGI
Sbjct: 71  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSKAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 130

Query: 122 FLAAVGGHAVGFVLFRARAKRKAESDSPKPNGPLT 156
           FLAAVGGHAVGFVLFRARAKRK+ESDS KPNGP++
Sbjct: 131 FLAAVGGHAVGFVLFRARAKRKSESDSTKPNGPIS 160

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL
Match: A0A0A0LD01 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1)

HSP 1 Score: 212 bits (539), Expect = 4.47e-68
Identity = 107/140 (76.43%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 4   LKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALA 63
           +KTTSHHNLGAVPPP++E+NPA      K VVHK+LYWGHDAQVLFTGWPGTNS MYALA
Sbjct: 1   MKTTSHHNLGAVPPPSLETNPAE-----KAVVHKSLYWGHDAQVLFTGWPGTNSGMYALA 60

Query: 64  VIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFL 123
           VIFVFVLAV VEWL   NFMK++ ++V  VV+QTAIH VRTGL+YMV+L+VMSFNGGIFL
Sbjct: 61  VIFVFVLAVMVEWLNSCNFMKQNGESVGKVVVQTAIHAVRTGLSYMVMLAVMSFNGGIFL 120

Query: 124 AAVGGHAVGFVLFRARAKRK 143
           AAVGGHAVGFVLF+ R +RK
Sbjct: 121 AAVGGHAVGFVLFKRRGERK 135

[Close]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL
Match: A0A5A7TLC7 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001240 PE=3 SV=1)

HSP 1 Score: 207 bits (527), Expect = 3.01e-66
Identity = 106/140 (75.71%), Postives = 119/140 (85.00%), Query Frame = 0


Query: 4   LKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALA 63
           +KTTSHHNLGAVPPP+ E+NPA      KT  HK+LYWGHDAQVLFTGWPGTNS MYALA
Sbjct: 1   MKTTSHHNLGAVPPPSPETNPAE-----KTGAHKSLYWGHDAQVLFTGWPGTNSGMYALA 60

Query: 64  VIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFL 123
           VIFVFVLAV VEWL   NFMK++ ++V  VV QTAIH VRTGL+YMV+L+VMSFNGGIFL
Sbjct: 61  VIFVFVLAVMVEWLNSCNFMKQNGESVWKVVGQTAIHAVRTGLSYMVMLAVMSFNGGIFL 120

Query: 124 AAVGGHAVGFVLFRARAKRK 143
           AAVGGHAVGFVLF+ R +RK
Sbjct: 121 AAVGGHAVGFVLFKKRGERK 135

[Close]

BLAST of Csor.00g246880.m01 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-29
Identity = 60/116 (51.72%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 33  TVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEWL---TYLNFMKESADN 92
           +++H T YWG++ QVLF+GWPG++  MYALA+IFVF LA   EWL   +  + +K+ AD 
Sbjct: 28  SLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADK 87

Query: 93  VLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAE 146
           +  V  +TA++TV++G +Y+VIL+V+SFNGG+FLAA+ GHA+GF +FR RA R  +
Sbjct: 88  LAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

[Close]

BLAST of Csor.00g246880.m01 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-28
Identity = 66/155 (42.58%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 9   HHNLGAVPPP--AVESNPATTNNAG-----------KTVVHKTLYWGHDAQVLFTGWPGT 68
           H ++  +P P  +  S+P++  N G           K ++H T +WG + +VLF+GWPGT
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  NSAMYALAVIFVFVLAVFVEWLTYLNFMKES---ADNVLTVVLQTAIHTVRTGLNYMVIL 128
           +S MYAL +IFVF LAV  EWL + + ++ S   + N    ++QTA++T+R GL Y+V+L
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 SVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAESD 148
           +VMSFN G+FL A+ GHAVGF+LF ++  R    D
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDD 157

[Close]

BLAST of Csor.00g246880.m01 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 60/136 (44.12%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 17  PPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEW 76
           PP+  S+     N+   ++H T +WG + ++LF+GWPGT+  MY L +I VF+LAV VEW
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 77  LTYLNFMK-ESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVL 136
           L + + ++   + +    ++QTA++T++TGL Y+V+L+VMSFNGG+F+ A+ G AVGF+L
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFML 126

Query: 137 FRARAKRKAESDSPKP 152
           F + A  K  SD  KP
Sbjct: 127 FGSTA-FKNPSDDEKP 141

[Close]

BLAST of Csor.00g246880.m01 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-27
Identity = 58/141 (41.13%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 9   HHNLGAVPPPAVESNPATTNNA-GKTVVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFV 68
           H ++  +PPP+  S+  + +      ++H T +WG + +VLF+GWPGT+S MYAL +I +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAVFVEWLTYLNFMKES-ADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAV 128
           F+LAV  EWL +   ++ S + N    + QTA++T++TGL+Y+V+L+VMSFN G+F+ A+
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHAVGFVLFRARAKRKAESD 148
            G+ VGF LF +   +K   D
Sbjct: 123 AGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Csor.00g246880.m01 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-24
Identity = 52/115 (45.22%), Postives = 80/115 (69.57%), Query Frame = 0


Query: 34  VVHKTLYWGHDAQVLFTGWPGTNSAMYALAVIFVFVLAVFVEWLTYLNFMKESADNVLTV 93
           ++H T +WG   +VLF GWPGT+  MY + +  +FV++ F E L+   FMK    ++   
Sbjct: 29  MMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGG 88

Query: 94  VLQTAIHTVRTGLNYMVILSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKAESDS 149
           +LQTA++TVR  L+Y+V+L+VMSFNGG+F+AA+ G  +GF++F +RA R   S+S
Sbjct: 89  LLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNS 143

The following BLAST results are available for this feature:

BLAST of Csor.00g246880.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8SAA5	3.9e-28	51.72	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]
Q39065	4.3e-27	42.58	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q8GWP3	2.8e-26	44.12	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q9STG2	6.2e-26	41.13	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q94EE4	1.7e-23	44.68	Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1	[more]

BLAST of Csor.00g246880.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596378.1	8.27e-107	100.00	Copper transporter 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7027927.1	4.62e-106	100.00	Copper transporter 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941866.1	4.60e-104	97.45	copper transporter 4-like [Cucurbita moschata]	[more]
XP_023540707.1	5.66e-102	97.40	copper transporter 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971334.1	7.83e-100	94.27	copper transporter 6-like [Cucurbita maxima]	[more]

BLAST of Csor.00g246880.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMA0	2.23e-104	97.45	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1	[more]
A0A6J1I894	3.79e-100	94.27	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1	[more]
A0A6J1CV92	7.62e-81	80.65	Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1	[more]
A0A0A0LD01	4.47e-68	76.43	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1	[more]
A0A5A7TLC7	3.01e-66	75.71	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]

BLAST of Csor.00g246880.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37925.1	2.8e-29	51.72	copper transporter 4	[more]
AT5G59030.1	3.1e-28	42.58	copper transporter 1	[more]
AT2G26975.1	2.0e-27	44.12	Ctr copper transporter family	[more]
AT3G46900.1	4.4e-27	41.13	copper transporter 2	[more]
AT5G59040.1	6.0e-24	45.22	copper transporter 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 40..83 e-value: 4.5E-8 score: 33.8 coord: 94..136 e-value: 1.0E-9 score: 39.1
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 16..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR12483:SF94	COPPER TRANSPORTER 4	coord: 16..147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g246880	Csor.00g246880	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246880.m01.CDS01	Csor.00g246880.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246880.m01.single01	Csor.00g246880.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246880.m01.start_codon01	Csor.00g246880.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g246880.m01.stop_codon01	Csor.00g246880.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g246880.m01	Csor.00g246880.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
biological_process	GO:0006878	cellular copper ion homeostasis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity