Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTTATCTTTTCTTTCTCAGCCCTGGATGTGCCGCCCTTGTTTTGCTGAAAGACAGCACTTCCGTCTTCTGTCCACTCTTGAGTATTAGTAGATTGCCAAATCCCATGTTACCAACAATGGTCGAGGATAGAACAATCATATTGACCAGAAAATGGCAAGCTTGCAATCAAGAGGCAGACAGTTGCATACAGATAGCACACCAAGTTGCCGGATGCAAAGACTACCCATCACCGCCGTGA mRNA sequence ATGGGTTATCTTTTCTTTCTCAGCCCTGGATGTGCCGCCCTTGTTTTGCTGAAAGACAGCACTTCCGTCTTCTGTCCACTCTTGAGTATTAGTAGATTGCCAAATCCCATGTTACCAACAATGGTCGAGGATAGAACAATCATATTGACCAGAAAATGGCAAGCTTGCAATCAAGAGGCAGACAGTTGCATACAGATAGCACACCAAGTTGCCGGATGCAAAGACTACCCATCACCGCCGTGA Coding sequence (CDS) ATGGGTTATCTTTTCTTTCTCAGCCCTGGATGTGCCGCCCTTGTTTTGCTGAAAGACAGCACTTCCGTCTTCTGTCCACTCTTGAGTATTAGTAGATTGCCAAATCCCATGTTACCAACAATGGTCGAGGATAGAACAATCATATTGACCAGAAAATGGCAAGCTTGCAATCAAGAGGCAGACAGTTGCATACAGATAGCACACCAAGTTGCCGGATGCAAAGACTACCCATCACCGCCGTGA Protein sequence MGYLFFLSPGCAALVLLKDSTSVFCPLLSISRLPNPMLPTMVEDRTIILTRKWQACNQEADSCIQIAHQVAGCKDYPSPP
Homology
BLAST of Csor.00g188430.m01 vs. NCBI nr
Match: KAG6577642.1 (hypothetical protein SDJN03_25216, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 166 bits (420), Expect = 9.07e-52 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 Query: 1 MGYLFFLSPGCAALVLLKDSTSVFCPLLSISRLPNPMLPTMVEDRTIILTRKWQACNQEA 60 MGYLFFLSPGCAALVLLKDSTSVFCPLLSISRLPNPMLPTMVEDRTIILTRKWQACNQEA Sbjct: 1 MGYLFFLSPGCAALVLLKDSTSVFCPLLSISRLPNPMLPTMVEDRTIILTRKWQACNQEA 60
Query: 61 DSCIQIAHQVAGCKDYPSPP 80 DSCIQIAHQVAGCKDYPSPP Sbjct: 61 DSCIQIAHQVAGCKDYPSPP 80
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6577642.1 | 9.07e-52 | 100.00 | hypothetical protein SDJN03_25216, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g188430.m01.CDS01 | Csor.00g188430.m01.CDS01 | CDS |
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g188430.m01.stop_codon01 | Csor.00g188430.m01.stop_codon01 | stop_codon |
The following single feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g188430.m01.single01 | Csor.00g188430.m01.single01 | single |
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Csor.00g188430.m01.start_codon01 | Csor.00g188430.m01.start_codon01 | start_codon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Csor.00g188430.m01 | Csor.00g188430.m01-protein | polypeptide |
|