Csor.00g168560.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g168560.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 9186071 .. 9186412 (-)
Sequence length342
RNA-Seq ExpressionCsor.00g168560.m01
SyntenyCsor.00g168560.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

mRNA sequence

ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

Coding sequence (CDS)

ATGAGAAGAAGATTGAGGAAATCAACATACGGATTCTTTGAAACTGAGCAATGGAATTTTCCGGCGTTCGCATTGCCAAAATCTAGGTTTTTAAGTACAGAACACCATACAAAAACACGCTTGAACAAAGTCACTCCGATATGCAAAATTCGAATCTCAAGAAGGAAAAATAGAGGATCACCTGCAGAAGATAAAAGAGATCGCTATCGCAAAGAATCGAATTCGATGCATTCTGGTGCGCATGTAGCTGTACGGGATGATTCCGATCACTCGGTTTCGAACGAACTTATCGTTATCGCCTTTACATTTCCCTCCATTCTGATTGAAAGATTCCCGCTGTAA

Protein sequence

MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGSPAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL
Homology
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BLAST of Csor.00g168560.m01 vs. NCBI nr
Match: KAG6573654.1 (hypothetical protein SDJN03_27541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (570), Expect = 1.30e-73
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS 60
           MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS
Sbjct: 1   MRRRLRKSTYGFFETEQWNFPAFALPKSRFLSTEHHTKTRLNKVTPICKIRISRRKNRGS 60

Query: 61  PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL 113
           PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL
Sbjct: 61  PAEDKRDRYRKESNSMHSGAHVAVRDDSDHSVSNELIVIAFTFPSILIERFPL 113

The following BLAST results are available for this feature:
BLAST of Csor.00g168560.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g168560.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573654.11.30e-73100.00hypothetical protein SDJN03_27541, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g168560.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g168560.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..86

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g168560Csor.00g168560gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g168560.m01.CDS01Csor.00g168560.m01.CDS01CDS


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g168560.m01.single01Csor.00g168560.m01.single01single


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g168560.m01.stop_codon01Csor.00g168560.m01.stop_codon01stop_codon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g168560.m01.start_codon01Csor.00g168560.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g168560.m01Csor.00g168560.m01-proteinpolypeptide