Csor.00g165100.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g165100.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	Csor_Chr04: 7751955 .. 7752299 (+)
Sequence length	345
RNA-Seq Expression	Csor.00g165100.m01
Synteny	Csor.00g165100.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGTATTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTCGGGGTATTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTCGGGGTATTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCCGCACACGGCGGACACAACACTCACTGGCGACCAAAAATACAACGCCAACGCCAACGCCGAAAGAGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCGCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MSGYSSRRRAAMCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN

Homology

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy Swiss-Prot
Match: Q6IWB1 (CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 24  SFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKY 83
           +F++ + ++ + QIW+    + +   +         +T +T   K N N + +R L ++Y
Sbjct: 9   TFSVALLLISLFQIWLFREGR-QVPELSDDQLGKDRNTLMTSKNK-NKNEDVQR-LFQRY 68

Query: 84  FKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 115
           FKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  FKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Csor.00g165100.m01 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (602), Expect = 1.83e-78
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSGYSSRRRAAMCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTAD 60
           MSGYSSRRRAAMCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTAD
Sbjct: 1   MSGYSSRRRAAMCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTAD 60

Query: 61  TTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
           TTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN
Sbjct: 61  TTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Csor.00g165100.m01 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218 bits (554), Expect = 2.70e-71
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 12  MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 71
           MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA
Sbjct: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60

Query: 72  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
           NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN
Sbjct: 61  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Csor.00g165100.m01 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 154 bits (388), Expect = 6.31e-46
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 12  MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIFPPPPP----HTADTTL 71
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIFPPPPP    H AD +L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csor.00g165100.m01 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (313), Expect = 1.35e-34
Identity = 71/110 (64.55%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 12  MCTRRIATSSSSSFALLIFILWVSQIWV-CSHCQARASRIFPPPPP-----HTADTTLTG 71
           MCTRRIA  +SSSFA+LI ILWVSQIWV C   QARASRIFPPPPP     HT D T   
Sbjct: 1   MCTRRIA--ASSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTDHA 60

Query: 72  DQKYNANANAERELLRKYFKGKAF-DRHRRDEGFEDSKRRIPSCPDPLHN 114
           +++Y        ELL+KYFK +AF D HR  EGF DSKR+IPSCPDPLHN
Sbjct: 61  NRRY--------ELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Csor.00g165100.m01 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 121 bits (304), Expect = 5.20e-31
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 12  MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 71
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60

Query: 72  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPD 110
           +A+   + EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  DASG--KNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 3.05e-46
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 12  MCTRRIATSSSSS----FALLIFILWVSQIWVCSHCQARASRIFPPPPP----HTADTTL 71
           M  RRI TSSSSS    FA+LI ILWVSQIWVC HCQARASRIFPPPPP    H AD +L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
           +G++K     NA+ +LL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEK----DNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 121 bits (304), Expect = 2.52e-31
Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 12  MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 71
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60

Query: 72  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPD 110
           +A+   + EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  DASG--KNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.99e-20
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 14  TRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA-- 73
           +RR    SSS  AL++F++++ QIWVCS C+A A RIFP       D  +    K+    
Sbjct: 6   SRRSIMYSSSLVALVVFLIFMLQIWVCSDCKAGAIRIFP-------DNGMPSKLKHRNIT 65

Query: 74  ---NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
              N   +++LLRK+F G+A   +   +GFE++KRR+PSCPDPLHN
Sbjct: 66  TTDNKATKQDLLRKFFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL
Match: A0A067GNI3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.84e-19
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 15  RRIATSSSSSF----ALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYN 74
           R + +SSSSSF    A+L+ I+ V QIWVC  CQ  A RIF  P        +T + K  
Sbjct: 10  RIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTPNEVEKQQMVTKNNK-- 69

Query: 75  ANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
             +  E +L+RKYF G AF+  R ++G  D KRR+PSCPDPLHN
Sbjct: 70  --SYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.30e-18
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 14  TRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA-- 73
           +RR    SSS   L++F+++V QIWVCS C+A A RIFP       D  +  + K     
Sbjct: 6   SRRSIMYSSSLLVLVVFLIFVLQIWVCSDCKAGAIRIFP-------DNGMAPNLKQRNIS 65

Query: 74  ---NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114
              N +++ +L  K+F G+ +  +   +GFE++KRR+PSCPDPLHN
Sbjct: 66  TTDNKDSKEDLFHKFFNGRQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Csor.00g165100.m01 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 24  SFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAERELLRKY 83
           +F++ + ++ + QIW+    + +   +         +T +T   K N N + +R L ++Y
Sbjct: 9   TFSVALLLISLFQIWLFREGR-QVPELSDDQLGKDRNTLMTSKNK-NKNEDVQR-LFQRY 68

Query: 84  FKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 115
           FKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  FKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Csor.00g165100.m01 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 30/97 (30.93%), Postives = 44/97 (45.36%), Query Frame = 0


Query: 20  SSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNANANAEREL 79
           SS ++  L++ +L       C + +  A RIFP  P               +    E +L
Sbjct: 9   SSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETPA--------------SGKRQEEDL 68

Query: 80  LRKYFKGKAFDRHRR--DEGFEDSKRRIPSCPDPLHN 115
           ++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  MKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Csor.00g165100.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IWB1	4.4e-05	32.97	CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 P...	[more]

BLAST of Csor.00g165100.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601288.1	1.83e-78	100.00	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032076.1	2.70e-71	100.00	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KGN52083.1	6.31e-46	70.27	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6573960.1	1.35e-34	64.55	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	5.20e-31	64.36	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of Csor.00g165100.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	3.05e-46	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	2.52e-31	64.36	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2C9VNI0	7.99e-20	43.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A067GNI3	1.84e-19	47.12	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1	[more]
A0A2C9UKL3	1.30e-18	40.57	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]

BLAST of Csor.00g165100.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	3.1e-06	32.97	CLAVATA3/ESR-RELATED 43	[more]
AT3G25905.1	2.2e-04	30.93	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..114
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 13..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g165100	Csor.00g165100	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g165100.m01.CDS01	Csor.00g165100.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g165100.m01.single01	Csor.00g165100.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g165100.m01.start_codon01	Csor.00g165100.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g165100.m01.stop_codon01	Csor.00g165100.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g165100.m01	Csor.00g165100.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane