Csor.00g164760.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g164760.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcription factor TCP12-like
Location	Csor_Chr04: 7903663 .. 7904276 (+)
Sequence length	279
RNA-Seq Expression	Csor.00g164760.m01
Synteny	Csor.00g164760.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGTTATTGAAGAAAGTAGCACCAAAAGCAAGAGTGTTGCTAATTTCCCTCAAAATTTGGGGTCCAAAGCCAAAAACTCAGCTTCTTTGATAAGTAATCATTGTTATGATAAAAGGGTTTCAAAGGAATCATGCTCTGAGATTCATCTTCTTCCTTGTTCTTCCATGGATATGGGCACCCTGTCCTTGGACACCATGAGAGCATCGCCTGCAGGTACTTTCCAAAATTAGGGTTTTGTTACGAACCCAACTCAAACATTTTTTATAAGAGGTAGAAACCCGGGAAAAACCCTGAAAGAGAAAACCTAAGGAGGACAATATTTGTTAACGGGGCTCGGGCTTGGGGCTTAGGTTACAAGTTAAATGGTTTAGAATTCAAAATAACCCCATTCTTTCTAATTTTTGTCAAGATAAACCCTAATTGAGCATTATAAGATCAAGTTTACCATAGAATTTATATGTACTTTTGTTGAATATAAGTTATGGTCTTAATTAGTTTATTTTTAAGCAAAGATCCTTAAATTCCTCGAATGGAATTATAATTTGCAGGTTTGAAATTGTCGGAGCTGGATGAAGTTGATGGTGTACTGATCTTCTATGGAGAATGA

mRNA sequence

ATGGAGGATGTTATTGAAGAAAGTAGCACCAAAAGCAAGAGTGTTGCTAATTTCCCTCAAAATTTGGGGTCCAAAGCCAAAAACTCAGCTTCTTTGATAAGTAATCATTGTTATGATAAAAGGGTTTCAAAGGAATCATGCTCTGAGATTCATCTTCTTCCTTGTTCTTCCATGGATATGGGCACCCTGTCCTTGGACACCATGAGAGCATCGCCTGCAGGTTTGAAATTGTCGGAGCTGGATGAAGTTGATGGTGTACTGATCTTCTATGGAGAATGA

Coding sequence (CDS)

ATGGAGGATGTTATTGAAGAAAGTAGCACCAAAAGCAAGAGTGTTGCTAATTTCCCTCAAAATTTGGGGTCCAAAGCCAAAAACTCAGCTTCTTTGATAAGTAATCATTGTTATGATAAAAGGGTTTCAAAGGAATCATGCTCTGAGATTCATCTTCTTCCTTGTTCTTCCATGGATATGGGCACCCTGTCCTTGGACACCATGAGAGCATCGCCTGCAGGTTTGAAATTGTCGGAGCTGGATGAAGTTGATGGTGTACTGATCTTCTATGGAGAATGA

Protein sequence

MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE

Homology

[Close]

BLAST of Csor.00g164760.m01 vs. NCBI nr
Match: KAG6601322.1 (hypothetical protein SDJN03_06555, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 1.15e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60
          MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM
Sbjct: 1  MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60

Query: 61 GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
          GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 61 GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92

[Close]

BLAST of Csor.00g164760.m01 vs. NCBI nr
Match: KAG7032105.1 (Transcription factor TCP12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177 bits (448), Expect = 8.41e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM
Sbjct: 219 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 278

Query: 61  GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 279 GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 310

[Close]

BLAST of Csor.00g164760.m01 vs. NCBI nr
Match: XP_022957318.1 (transcription factor CYCLOIDEA-like [Cucurbita moschata])

HSP 1 Score: 177 bits (448), Expect = 8.88e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM
Sbjct: 221 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 280

Query: 61  GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 281 GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 312

[Close]

BLAST of Csor.00g164760.m01 vs. NCBI nr
Match: XP_023515134.1 (transcription factor CYCLOIDEA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167 bits (424), Expect = 3.38e-49
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSE-IHLLPCSSMD 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSE IHLLP SSMD
Sbjct: 217 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEEIHLLPGSSMD 276

Query: 61  MGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           MGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 277 MGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 309

[Close]

BLAST of Csor.00g164760.m01 vs. NCBI nr
Match: XP_022984046.1 (transcription factor CYCLOIDEA-like [Cucurbita maxima])

HSP 1 Score: 162 bits (411), Expect = 3.21e-47
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCS-EIHLLPCS--S 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCS EIHLLP S  S
Sbjct: 217 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSGEIHLLPGSGSS 276

Query: 61  MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 277 MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 311

[Close]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL
Match: A0A6J1GZV4 (transcription factor CYCLOIDEA-like OS=Cucurbita moschata OX=3662 GN=LOC111458752 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 4.30e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM
Sbjct: 221 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 280

Query: 61  GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 281 GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 312

[Close]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL
Match: A0A6J1J441 (transcription factor CYCLOIDEA-like OS=Cucurbita maxima OX=3661 GN=LOC111482452 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.55e-47
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCS-EIHLLPCS--S 60
           MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCS EIHLLP S  S
Sbjct: 217 MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSGEIHLLPGSGSS 276

Query: 61  MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE
Sbjct: 277 MDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 311

[Close]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL
Match: A0A1S3BFB2 (transcription factor TCP12-like OS=Cucumis melo OX=3656 GN=LOC103489247 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.11e-21
Identity = 66/97 (68.04%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 3   DVIEE-SSTKSK-----SVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSE-IHLLPC 62
           DV EE SS KSK     S+    ++LGS+ KNS SLI     DKRVSKE CSE IHLLP 
Sbjct: 218 DVSEENSSNKSKISTHVSLCENEKDLGSEEKNSDSLIM----DKRVSKEICSEDIHLLPD 277

Query: 63  SSMDMGTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
           SSMDM +LSLDTM+AS AGLKL ELDEVDGVLIFYGE
Sbjct: 278 SSMDMPSLSLDTMKASSAGLKLLELDEVDGVLIFYGE 310

[Close]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL
Match: A0A0A0KT45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608320 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.40e-21
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 22  LGSKAKNSASLISNHCYDKRVSKESCS-EIHLLPCSSMDMGTLSLDTMRASPAGLKLSEL 81
           LGS+ KNS SLI     DKRVSKE CS EIHLLP SSMDM TLSLDTM+AS AGLKL EL
Sbjct: 321 LGSEEKNSDSLIM----DKRVSKEICSDEIHLLPDSSMDMPTLSLDTMKASSAGLKLLEL 380

Query: 82  DEVDGVLIFYGE 92
           DEVDGVLIFYGE
Sbjct: 381 DEVDGVLIFYGE 388

[Close]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL
Match: A0A6J1G0U4 (transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111449645 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.75e-13
Identity = 49/92 (53.26%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1   MEDVIEESSTKSKSVANFPQNLGSKAKNSASLISNHCYDKRVSKESCSEIHLLPCSSMDM 60
           M DV EE  TK+K   NF    G   +N   L SN        K S   +HLLP SSMDM
Sbjct: 230 MGDVSEEIGTKNK---NFEFERG---ENERFLSSNV-------KNSADHVHLLPGSSMDM 289

Query: 61  GTLSLDTMRASPAGLKLSELDEVDGVLIFYGE 92
            ++SLD+ +ASPAGLK+ ELDE+DGVLIFYGE
Sbjct: 290 SSMSLDSTKASPAGLKVLELDEIDGVLIFYGE 308

The following BLAST results are available for this feature:

BLAST of Csor.00g164760.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g164760.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601322.1	1.15e-55	100.00	hypothetical protein SDJN03_06555, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032105.1	8.41e-53	100.00	Transcription factor TCP12, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022957318.1	8.88e-53	100.00	transcription factor CYCLOIDEA-like [Cucurbita moschata]	[more]
XP_023515134.1	3.38e-49	97.85	transcription factor CYCLOIDEA-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984046.1	3.21e-47	95.79	transcription factor CYCLOIDEA-like [Cucurbita maxima]	[more]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZV4	4.30e-53	100.00	transcription factor CYCLOIDEA-like OS=Cucurbita moschata OX=3662 GN=LOC11145875...	[more]
A0A6J1J441	1.55e-47	95.79	transcription factor CYCLOIDEA-like OS=Cucurbita maxima OX=3661 GN=LOC111482452 ...	[more]
A0A1S3BFB2	1.11e-21	68.04	transcription factor TCP12-like OS=Cucumis melo OX=3656 GN=LOC103489247 PE=4 SV=...	[more]
A0A0A0KT45	7.40e-21	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608320 PE=4 SV=1	[more]
A0A6J1G0U4	1.75e-13	53.26	transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111449645 PE...	[more]

BLAST of Csor.00g164760.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g164760	Csor.00g164760	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.CDS02	Csor.00g164760.m01.CDS02	CDS
Csor.00g164760.m01.CDS01	Csor.00g164760.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.initial01	Csor.00g164760.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.start_codon01	Csor.00g164760.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.intron01	Csor.00g164760.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.terminal01	Csor.00g164760.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01.stop_codon01	Csor.00g164760.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g164760.m01	Csor.00g164760.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000032	regulation of secondary shoot formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding