Csor.00g155150.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155150.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 10956494 .. 10957271 (-)
Sequence length	324
RNA-Seq Expression	Csor.00g155150.m01
Synteny	Csor.00g155150.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGACGCCTTCATCTCTTCTTCTCAGCGCAGGTCTGTTCTATTCTTCCCATTTTCACTTTTCAAACCTGATTTACATAATTTTATTTTCTGGGTTCTTCTTCAATTCCCAAAATTCACCCAAATTTTGGTGGGTTCTGTGTGATAATTAGATGGAGGAACCCAAATTGAACGGAACCCATTAATTGAATTTGTTCGACTTAGGAAGAAAGTCCGTTTAGGTTTTTGGTTCGTTGTGTCTCTCTGTTGGGCACTGGTGGATTGTGTAGCCATTTGTATATAAGAAAGCTAAATTGGTTGCATCTACTACTTGTACTTTGAAAATATTCTTGTATCAAGATTATTTCAATGGGAAAATTTGGATTGGTGTTGTTCATATCTGATAATTGCATTTTGAGTTACTTAGTTCTGTATGTAAAGGGGTTTTGAGTATAGAACTTGTTTGAGGATCTGGGGATGAACGTGATTACTTTGTGTGTTGTAACAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCGGATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCCAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGA

mRNA sequence

ATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGACGCCTTCATCTCTTCTTCTCAGCGCAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCGGATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCCAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGA

Coding sequence (CDS)

ATGGAAAACGTAACAGCGAGCGAATTGGCCGGCTTCGCTGTGGGGGCTCTGCTCGTTTGTGCCACCATTTCTGCCCCTCGAATAGACGCCTTCATCTCTTCTTCTCAGCGCAGATCGTTGGGCATGTGCAAGAGATGTGGTGACCTGAGGATGATAGCATGTTCAAGATGTAAAGGAGTTGGATCAACCAAATCAGGTGGAGTATTTGCTGAGCTTTACGAATCATTTGGCAAAGACGAACCGGATGCGCCCTCTATCCCGTGCACGAGGTGCAATGCCAAAGGTCGCTTCCCATGTCCAGATTGCTGCTCTCAAATGCCATGA

Protein sequence

MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGVGSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP

Homology

[Close]

BLAST of Csor.00g155150.m01 vs. NCBI nr
Match: XP_022955904.1 (uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothetical protein SDJN03_21724, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018197.1 hypothetical protein SDJN02_20065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219 bits (557), Expect = 8.02e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107

[Close]

BLAST of Csor.00g155150.m01 vs. NCBI nr
Match: XP_023528018.1 (uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217 bits (552), Expect = 6.22e-71
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEP+APSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Csor.00g155150.m01 vs. NCBI nr
Match: XP_022980758.1 (uncharacterized protein LOC111480031 [Cucurbita maxima])

HSP 1 Score: 216 bits (549), Expect = 1.78e-70
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEP+APSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Csor.00g155150.m01 vs. NCBI nr
Match: XP_038901067.1 (uncharacterized protein LOC120088085 [Benincasa hispida])

HSP 1 Score: 191 bits (484), Expect = 1.29e-60
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCA+ISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCASISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQM 106
           GS KSGG+F     AE YESFGKDE +APSIPCTRCNAKGRF CPDCCSQM
Sbjct: 61  GSIKSGGLFGVNILAEFYESFGKDESNAPSIPCTRCNAKGRFQCPDCCSQM 111

[Close]

BLAST of Csor.00g155150.m01 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 187 bits (474), Expect = 4.60e-59
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YE+ GKDE + PSIPCTRCNAKGRF CPDCCSQ+
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQL 111

[Close]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL
Match: A0A6J1GXK9 (uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC111457749 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 3.88e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV
Sbjct: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107

[Close]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 8.63e-71
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 10  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 69

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQMP 107
           GSTKSGGVFAELYESFGKDEP+APSIPCTRCNAKGRFPCPDCCSQMP
Sbjct: 70  GSTKSGGVFAELYESFGKDEPNAPSIPCTRCNAKGRFPCPDCCSQMP 116

[Close]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 2.23e-59
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YE+ GKDE + PSIPCTRCNAKGRF CPDCCSQ+
Sbjct: 61  GSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNAKGRFRCPDCCSQL 111

[Close]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.77e-58
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQR SLGMCKRCGDLRMIACS+C+GV
Sbjct: 1   MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRSSLGMCKRCGDLRMIACSKCRGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQ 105
           GSTK+GG+F     A+ YESFG+DE + PSIPC+RCNAKGRF CPDCCSQ
Sbjct: 61  GSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ 110

[Close]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL
Match: A0A1S3CMA9 (uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=4 SV=1)

HSP 1 Score: 171 bits (433), Expect = 3.73e-53
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           ME++T SELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACS+CKGV
Sbjct: 1   MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSKCKGV 60

Query: 61  GSTKSGGVF-----AELYESFGKDEPDAPSIPCTRCNAKGRFPCPDCCSQM 106
           GSTKSGG+F     A+ YES    E + PSIPC RCNAKGRF CPDC SQ+
Sbjct: 61  GSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNAKGRFQCPDCSSQL 109

[Close]

BLAST of Csor.00g155150.m01 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-28
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRRSLGMCKRCGDLRMIACSRCKGV 60
           M+++T++E+AG AVGALL+ ATI+AP++DAFI++SQRRSLGMC++CGDL+ +AC RCKG 
Sbjct: 1   MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRRSLGMCRKCGDLKNVACGRCKGT 60

Query: 61  GSTKSGGVFAELYESFGKDEPDAPSIPCTRCNAKGRFPCPDC 103
           G+ KSGG F         D  +  S+ C  C AKG FPCP+C
Sbjct: 61  GTIKSGGFFG------FSDSSNTRSVACDNCQAKGCFPCPEC 96

The following BLAST results are available for this feature:

BLAST of Csor.00g155150.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g155150.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955904.1	8.02e-72	100.00	uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothet...	[more]
XP_023528018.1	6.22e-71	99.07	uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo]	[more]
XP_022980758.1	1.78e-70	98.13	uncharacterized protein LOC111480031 [Cucurbita maxima]	[more]
XP_038901067.1	1.29e-60	85.59	uncharacterized protein LOC120088085 [Benincasa hispida]	[more]
XP_004137138.1	4.60e-59	82.88	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]

BLAST of Csor.00g155150.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GXK9	3.88e-72	100.00	uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC1114577...	[more]
A0A6J1J083	8.63e-71	98.13	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]
A0A0A0KZH5	2.23e-59	82.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]
A0A6J1DQH1	1.77e-58	82.73	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1S3CMA9	3.73e-53	79.28	uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=...	[more]

BLAST of Csor.00g155150.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	3.6e-28	55.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..105
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g155150	Csor.00g155150	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.CDS01	Csor.00g155150.m01.CDS01	CDS
Csor.00g155150.m01.CDS02	Csor.00g155150.m01.CDS02	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.stop_codon01	Csor.00g155150.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.terminal01	Csor.00g155150.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.intron01	Csor.00g155150.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.initial01	Csor.00g155150.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01.start_codon01	Csor.00g155150.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g155150.m01	Csor.00g155150.m01-protein	polypeptide