Csor.00g143130.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g143130.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL70-like
Location	Csor_Chr03: 8748786 .. 8749301 (-)
Sequence length	516
RNA-Seq Expression	Csor.00g143130.m01
Synteny	Csor.00g143130.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

mRNA sequence

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Coding sequence (CDS)

ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA

Protein sequence

MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD

Homology

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BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 107/165 (64.85%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRI--- 110

Query: 67  AEGEAGVVIDV--GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALP 126
                 V+IDV  GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LP
Sbjct: 111 HHHHHHVIIDVVPGLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLP 170

Query: 127 DCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           DC HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 DCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 93/183 (50.82%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P    E    + +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNG--LSSTSVVERNSNRS-------------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S S    N+N S              
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  PPQAEGEAGVVIDVGLDQETIKSYPKLLYSE--AKLLKND------SSASCCSICLADYK 138
               + E+G V+  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

[Close]

BLAST of Csor.00g143130.m01 vs. NCBI nr
Match: KAG6604314.1 (RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034467.1 RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341 bits (874), Expect = 4.31e-118
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. NCBI nr
Match: XP_023544988.1 (RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (867), Expect = 5.04e-117
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. NCBI nr
Match: XP_022977896.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 337 bits (864), Expect = 1.45e-116
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. NCBI nr
Match: XP_022925965.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 337 bits (863), Expect = 2.05e-116
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA  V+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. NCBI nr
Match: XP_008462625.1 (PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo] >KAA0025213.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK07452.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (770), Expect = 3.22e-102
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL
Match: A0A6J1IL86 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE=4 SV=1)

HSP 1 Score: 337 bits (864), Expect = 7.00e-117
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERN+N
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNTN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA VV+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAVVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL
Match: A0A6J1EJP9 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 PE=4 SV=1)

HSP 1 Score: 337 bits (863), Expect = 9.94e-117
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN
Sbjct: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60

Query: 61  RSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120
           RSPPQAEGEA  V+DVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR
Sbjct: 61  RSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLR 120

Query: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 ALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL
Match: A0A5A7SKL1 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001830 PE=4 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.56e-102
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL
Match: A0A1S3CHE9 (RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.56e-102
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSV++  ++
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTAS 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA  E   VV+++GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL
Match: A0A0A0KIW7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.28e-101
Identity = 150/172 (87.21%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSN 60
           MNNGTA++GGFLSS+NIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSS+ V     N
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQRTPPN 60

Query: 61  RSPPQAEGEA-GVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVL 120
           RSPPQA GE   VV+D+GLDQETI SYPKLLYSEAKL KNDS+ASCCSICLADYKNS+VL
Sbjct: 61  RSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVL 120

Query: 121 RALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
           R LPDCGHLFHLKC+DPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172

[Close]

BLAST of Csor.00g143130.m01 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 200.7 bits (509), Expect = 9.7e-52
Identity = 107/165 (64.85%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 7   DSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSST-SVVERNSNRSPPQ 66
           D  G L +++IGGF YGIGVS+G+L+LITTI L SYYCTRN LSS+ S   ++S R    
Sbjct: 51  DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRI--- 110

Query: 67  AEGEAGVVIDV--GLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALP 126
                 V+IDV  GLD++TI+SYPK+LYSEA   K  ++ASCC+ICL DYK  ++LR LP
Sbjct: 111 HHHHHHVIIDVVPGLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLP 170

Query: 127 DCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLAS 169
           DC HLFHLKCID WLRL+PTCPVCRTSP+PTPLSTPLAE VPLAS
Sbjct: 171 DCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]

BLAST of Csor.00g143130.m01 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.4e-44
Identity = 93/183 (50.82%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 8   SGGFL-SSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVV-------ERNS 67
           SG +L +++ +GG  YGIGVS+G+L+LITTI L SYYCTR+ +S++          +R S
Sbjct: 10  SGHWLTNTDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRES 69

Query: 68  NRSPPQA---------EGEAGVVIDVGLDQETIKSYPKLLYSEAK----LLKNDSSASCC 127
           N + P           E +  VV  +GL +E IK +PKL Y EA+    L K  S+ SCC
Sbjct: 70  NGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCC 129

Query: 128 SICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPL 170
           SICLADYK  +++R LPDC HLFH  C+DPWLRLHPTCPVCRTSP+P+P  TP+A+ VP 
Sbjct: 130 SICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPF 189

[Close]

BLAST of Csor.00g143130.m01 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-31
Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNR-------------SPPQ 78
           GFGY I ++LG L+L++T+LL+SY C R+    T+ VE   +R                 
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 79  AEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSAS----------CCSICLADYKN 138
            + EAG V+ VGLDQ  I SYPK  +S     K+ S+AS           CSICL +YK 
Sbjct: 94  EDLEAGDVV-VGLDQAVINSYPKFHFS-----KDTSAASSDGFGGGGDTTCSICLCEYKE 153

Query: 139 SNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
           + +LR +P+C H FHL C+D WL+L+ +CPVCR SP+P    TPLSTPL+E VPL+
Sbjct: 154 AEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Csor.00g143130.m01 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGL 78
           G GYGI +++ +L+LI+ I+LASY C R+  +       +     P    E    + +GL
Sbjct: 12  GLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VKLGL 71

Query: 79  DQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWL 138
           D+  I+SYP+++  +++ L   ++   CSICL DY+    +R +P+C H FH  C+D WL
Sbjct: 72  DRPVIESYPRIVLGDSRRLPRPNNGP-CSICLCDYEAREPVRCIPECNHCFHTDCVDEWL 131

Query: 139 RLHPTCPVCRTSPIPTPLSTPLAEQVPLA 168
           R   TCP+CR SP P+ L+TPL++ VPLA
Sbjct: 132 RTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Csor.00g143130.m01 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 69/177 (38.98%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 19  GFGYGIGVSLGLLILITTILLASYYCTRNG--LSSTSVVERNSNRS-------------- 78
           G GY I ++LG L+LI+TI+L+SY C R      S S    N+N S              
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 79  PPQAEGEAGVVIDVGLDQETIKSYPKLLYSE--AKLLKND------SSASCCSICLADYK 138
               + E+G V+  GLD   I SYPK  +++    ++  D         + CSICL +Y 
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYM 144

Query: 139 NSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIP----TPLSTPLAEQVPLA 168
              +LR +P+C H FH+ C+D WL+L+ +CPVCR SP+P    TP STPL+E VPL+
Sbjct: 145 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Csor.00g143130.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	1.4e-50	64.85	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	1.0e-42	50.82	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	1.6e-30	44.32	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	1.8e-26	39.60	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	4.4e-25	38.98	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Csor.00g143130.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604314.1	4.31e-118	100.00	RING-H2 finger protein ATL70, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023544988.1	5.04e-117	98.83	RING-H2 finger protein ATL70-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977896.1	1.45e-116	98.25	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
XP_022925965.1	2.05e-116	98.25	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_008462625.1	3.22e-102	86.63	PREDICTED: RING-H2 finger protein ATL70-like [Cucumis melo] >KAA0025213.1 RING-H...	[more]

BLAST of Csor.00g143130.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IL86	7.00e-117	98.25	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111478050 PE...	[more]
A0A6J1EJP9	9.94e-117	98.25	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111433226 ...	[more]
A0A5A7SKL1	1.56e-102	86.63	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CHE9	1.56e-102	86.63	RING-H2 finger protein ATL70-like OS=Cucumis melo OX=3656 GN=LOC103500941 PE=4 S...	[more]
A0A0A0KIW7	1.28e-101	87.21	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G476670 P...	[more]

BLAST of Csor.00g143130.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	9.7e-52	64.85	RING/U-box superfamily protein	[more]
AT5G06490.1	7.4e-44	50.82	RING/U-box superfamily protein	[more]
AT2G46160.1	1.1e-31	44.32	RING/U-box superfamily protein	[more]
AT5G07040.1	1.3e-27	39.60	RING/U-box superfamily protein	[more]
AT3G61550.1	3.1e-26	38.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 e-value: 1.4E-7 score: 41.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..148 e-value: 1.7E-12 score: 47.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 106..148 score: 12.946621
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..152 e-value: 1.5E-22 score: 81.1
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..170
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 105..148 e-value: 6.14074E-20 score: 76.1865
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 82..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g143130	Csor.00g143130	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g143130.m01.CDS01	Csor.00g143130.m01.CDS01	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g143130.m01.stop_codon01	Csor.00g143130.m01.stop_codon01	stop_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g143130.m01.single01	Csor.00g143130.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g143130.m01.start_codon01	Csor.00g143130.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g143130.m01	Csor.00g143130.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane