Csor.00g139370.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g139370.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 14409081 .. 14409443 (+)
Sequence length363
RNA-Seq ExpressionCsor.00g139370.m01
SyntenyCsor.00g139370.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGGTTGATAATTCTTGCCAAGCCCCTGCTCTTGTTGTGTTTTGATCTGACCCCACATCTTCTGCTGCAAGTTTCAGCATTTCAGCTTTGGCTTAGTAAATCATCCAGATCACCAGCACCAGCAGCGCAGGGCTTTGGAAAGAAGCACTATGCATTTGACAAGGCACTGAAAGAGTCTTTTGAACAGGACGACTCCCCACCAATAATTGCACCAAGTCTTTGCCATTCTCATTTCTTGTCAAAAATGATGGGGTGGAAGAAATCACCATCTTCGCACTATTGTCTCGCTTTGGGAAATTCTCACTCTGTCAGTTTCAACATCTTCGCCTTGTTCCAAAAAAGTTATTCCAATGTTTGA

mRNA sequence

ATGAGTTGGTTGATAATTCTTGCCAAGCCCCTGCTCTTGTTGTGTTTTGATCTGACCCCACATCTTCTGCTGCAAGTTTCAGCATTTCAGCTTTGGCTTAGTAAATCATCCAGATCACCAGCACCAGCAGCGCAGGGCTTTGGAAAGAAGCACTATGCATTTGACAAGGCACTGAAAGAGTCTTTTGAACAGGACGACTCCCCACCAATAATTGCACCAAGTCTTTGCCATTCTCATTTCTTGTCAAAAATGATGGGGTGGAAGAAATCACCATCTTCGCACTATTGTCTCGCTTTGGGAAATTCTCACTCTGTCAGTTTCAACATCTTCGCCTTGTTCCAAAAAAGTTATTCCAATGTTTGA

Coding sequence (CDS)

ATGAGTTGGTTGATAATTCTTGCCAAGCCCCTGCTCTTGTTGTGTTTTGATCTGACCCCACATCTTCTGCTGCAAGTTTCAGCATTTCAGCTTTGGCTTAGTAAATCATCCAGATCACCAGCACCAGCAGCGCAGGGCTTTGGAAAGAAGCACTATGCATTTGACAAGGCACTGAAAGAGTCTTTTGAACAGGACGACTCCCCACCAATAATTGCACCAAGTCTTTGCCATTCTCATTTCTTGTCAAAAATGATGGGGTGGAAGAAATCACCATCTTCGCACTATTGTCTCGCTTTGGGAAATTCTCACTCTGTCAGTTTCAACATCTTCGCCTTGTTCCAAAAAAGTTATTCCAATGTTTGA

Protein sequence

MSWLIILAKPLLLLCFDLTPHLLLQVSAFQLWLSKSSRSPAPAAQGFGKKHYAFDKALKESFEQDDSPPIIAPSLCHSHFLSKMMGWKKSPSSHYCLALGNSHSVSFNIFALFQKSYSNV
Homology
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BLAST of Csor.00g139370.m01 vs. NCBI nr
Match: KAG6608637.1 (hypothetical protein SDJN03_01979, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (620), Expect = 5.13e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MSWLIILAKPLLLLCFDLTPHLLLQVSAFQLWLSKSSRSPAPAAQGFGKKHYAFDKALKE 60
           MSWLIILAKPLLLLCFDLTPHLLLQVSAFQLWLSKSSRSPAPAAQGFGKKHYAFDKALKE
Sbjct: 1   MSWLIILAKPLLLLCFDLTPHLLLQVSAFQLWLSKSSRSPAPAAQGFGKKHYAFDKALKE 60

Query: 61  SFEQDDSPPIIAPSLCHSHFLSKMMGWKKSPSSHYCLALGNSHSVSFNIFALFQKSYSNV 120
           SFEQDDSPPIIAPSLCHSHFLSKMMGWKKSPSSHYCLALGNSHSVSFNIFALFQKSYSNV
Sbjct: 61  SFEQDDSPPIIAPSLCHSHFLSKMMGWKKSPSSHYCLALGNSHSVSFNIFALFQKSYSNV 120

The following BLAST results are available for this feature:
BLAST of Csor.00g139370.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g139370.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608637.15.13e-81100.00hypothetical protein SDJN03_01979, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g139370.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g139370.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g139370Csor.00g139370gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g139370.m01.CDS01Csor.00g139370.m01.CDS01CDS


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g139370.m01.single01Csor.00g139370.m01.single01single


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g139370.m01.start_codon01Csor.00g139370.m01.start_codon01start_codon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g139370.m01.stop_codon01Csor.00g139370.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g139370.m01Csor.00g139370.m01-proteinpolypeptide