Csor.00g109360.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g109360.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 121629 .. 122247 (+)
Sequence length375
RNA-Seq ExpressionCsor.00g109360.m01
SyntenyCsor.00g109360.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGGTTCCCATATGAGAAGAAACGCGGTGTAAATTACAATTTACAACGAATTCCGGCAGCTCTCAATTTGCCGCCTTTTGCTCTTCGCGCCTTCCCCTGCCCCAATTGAATCTACTTTCTCAACGTCCACGCGATCGTCAGCTCGTTTCTCATACGCCCTAATTTGCAGAATCACAAGGTAACGTCATAATTTAATTCAGTCCACTATCTCACTGAGCTCCGACCCAATTCGTCTATTGCAATTTATGTATAAGCTCAGCTAAATCTGCTCCCACTCAGTTGTAGTATGTGAGCTCTTATTGCTGTCTCAAACTGGTAGCTCGGAGCACGGCTCTTCTGTGTTCAAGCTGTTCGGAAGCTTGACGTTTCCGGGTGCAGGTGAATTCGTGTGGGAATTCAAGCGATTTACGACTGAACCCTACAATATAGATTTGACTGGTTTGTCTTTTAACTCAATGGGTTTTGTTTTGGGGCTGGTTTATTCTGCGCGTGACTACTTGTGCTGCATTGATGTAGCTTGTTTTTTCTGGGTTTATTCTCTATTGGTCGACGAAGTATTAGCTTCAAGCTCTTCCTACAGATGTCTTTTGTGTAATCAGTATGAAAGTTACTGA

mRNA sequence

ATGCTTCGGTTCCCATATGAGAAGAAACGCGAATCACAAGTTGTAGTATGTGAGCTCTTATTGCTGTCTCAAACTGGTAGCTCGGAGCACGGCTCTTCTGTGTTCAAGCTGTTCGGAAGCTTGACGTTTCCGGGTGCAGGTGAATTCGTGTGGGAATTCAAGCGATTTACGACTGAACCCTACAATATAGATTTGACTGGTTTGTCTTTTAACTCAATGGGTTTTGTTTTGGGGCTGGTTTATTCTGCGCGTGACTACTTGTGCTGCATTGATGTAGCTTGTTTTTTCTGGGTTTATTCTCTATTGGTCGACGAAGTATTAGCTTCAAGCTCTTCCTACAGATGTCTTTTGTGTAATCAGTATGAAAGTTACTGA

Coding sequence (CDS)

ATGCTTCGGTTCCCATATGAGAAGAAACGCGAATCACAAGTTGTAGTATGTGAGCTCTTATTGCTGTCTCAAACTGGTAGCTCGGAGCACGGCTCTTCTGTGTTCAAGCTGTTCGGAAGCTTGACGTTTCCGGGTGCAGGTGAATTCGTGTGGGAATTCAAGCGATTTACGACTGAACCCTACAATATAGATTTGACTGGTTTGTCTTTTAACTCAATGGGTTTTGTTTTGGGGCTGGTTTATTCTGCGCGTGACTACTTGTGCTGCATTGATGTAGCTTGTTTTTTCTGGGTTTATTCTCTATTGGTCGACGAAGTATTAGCTTCAAGCTCTTCCTACAGATGTCTTTTGTGTAATCAGTATGAAAGTTACTGA

Protein sequence

MLRFPYEKKRESQVVVCELLLLSQTGSSEHGSSVFKLFGSLTFPGAGEFVWEFKRFTTEPYNIDLTGLSFNSMGFVLGLVYSARDYLCCIDVACFFWVYSLLVDEVLASSSSYRCLLCNQYESY
Homology
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BLAST of Csor.00g109360.m01 vs. NCBI nr
Match: KAG6570329.1 (hypothetical protein SDJN03_29244, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254 bits (648), Expect = 3.70e-85
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MLRFPYEKKRESQVVVCELLLLSQTGSSEHGSSVFKLFGSLTFPGAGEFVWEFKRFTTEP 60
           MLRFPYEKKRESQVVVCELLLLSQTGSSEHGSSVFKLFGSLTFPGAGEFVWEFKRFTTEP
Sbjct: 1   MLRFPYEKKRESQVVVCELLLLSQTGSSEHGSSVFKLFGSLTFPGAGEFVWEFKRFTTEP 60

Query: 61  YNIDLTGLSFNSMGFVLGLVYSARDYLCCIDVACFFWVYSLLVDEVLASSSSYRCLLCNQ 120
           YNIDLTGLSFNSMGFVLGLVYSARDYLCCIDVACFFWVYSLLVDEVLASSSSYRCLLCNQ
Sbjct: 61  YNIDLTGLSFNSMGFVLGLVYSARDYLCCIDVACFFWVYSLLVDEVLASSSSYRCLLCNQ 120

Query: 121 YESY 124
           YESY
Sbjct: 121 YESY 124

The following BLAST results are available for this feature:
BLAST of Csor.00g109360.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g109360.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570329.13.70e-85100.00hypothetical protein SDJN03_29244, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g109360.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g109360.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g109360Csor.00g109360gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.CDS01Csor.00g109360.m01.CDS01CDS
Csor.00g109360.m01.CDS02Csor.00g109360.m01.CDS02CDS
Csor.00g109360.m01.CDS03Csor.00g109360.m01.CDS03CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.start_codon01Csor.00g109360.m01.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.initial01Csor.00g109360.m01.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.intron01Csor.00g109360.m01.intron01intron
Csor.00g109360.m01.intron02Csor.00g109360.m01.intron02intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.internal01Csor.00g109360.m01.internal01internal


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.terminal01Csor.00g109360.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01.stop_codon01Csor.00g109360.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g109360.m01Csor.00g109360.m01-proteinpolypeptide