Csor.00g108140.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108140.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Late cornified envelope protein 1E
Location	Csor_Chr06: 7485727 .. 7486259 (+)
Sequence length	342
RNA-Seq Expression	Csor.00g108140.m01
Synteny	Csor.00g108140.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACATCATCCTCTTCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCGTAAGAATCCCTTAATTTTAATTCTTTTATTGTTGTGCTAGAATGTGTAATTTAAAAATTATCTTAAATAAATTAAGTAAAGAGACAGAGAAAAGATTCTTAGTACAAGAATCTAATAAAATACGGTGAACTATAATTTATTACTAAATATCTATTGTTTCGATTAATGGTGATGTTGGAGTTTGGTTCAGTTATTGCAGTAACTATTACGGCGAAACGGCGGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

mRNA sequence

ATGGCTTCACATCATCCTCTTCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAACGGCGGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Coding sequence (CDS)

ATGGCTTCACATCATCCTCTTCCTCTTCCTCTTCCTCCCGTATGTTGCTTGTGCGGCGATGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTCCAACACTCTTATTGCAGTAACTATTACGGCGAAACGGCGGAGGCTATTGAAGCCTGTGATTGGTGCAGATGTGAACGGAGATGCGGCCGCCGTGGCTCTGCGGCAAGGAAGTCTGGCGTGGCATCCCAAAAGAGCTCCGGTCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Protein sequence

MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC

Homology

[Close]

BLAST of Csor.00g108140.m01 vs. NCBI nr
Match: KAG6597027.1 (hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242 bits (617), Expect = 8.75e-81
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR 60
           MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR
Sbjct: 1   MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR 60

Query: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113

[Close]

BLAST of Csor.00g108140.m01 vs. NCBI nr
Match: KAG7028505.1 (hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231 bits (588), Expect = 2.18e-76
Identity = 110/113 (97.35%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR 60
           MASHHPLPLP  PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIEACDWCR
Sbjct: 1   MASHHPLPLP--PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEACDWCR 60

Query: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 111

[Close]

BLAST of Csor.00g108140.m01 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima])

HSP 1 Score: 231 bits (588), Expect = 2.65e-76
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MASHHP----LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEAC 60
           MASHHP    LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           DWCRCERRCGRRGSAARK GVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Csor.00g108140.m01 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima])

HSP 1 Score: 226 bits (576), Expect = 1.86e-74
Identity = 110/118 (93.22%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MASHHP----LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEAC 60
           MASHHP    LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQK-SSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           DWCRCERRCGRRGSAARK GVASQK SSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Csor.00g108140.m01 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (572), Expect = 5.64e-74
Identity = 107/113 (94.69%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MASHHPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCR 60
           MASHHPLP    PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE CDWCR
Sbjct: 1   MASHHPLP----PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGELAEAIEVCDWCR 60

Query: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  CERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 109

[Close]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.28e-76
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MASHHP----LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEAC 60
           MASHHP    LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           DWCRCERRCGRRGSAARK GVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 8.99e-75
Identity = 110/118 (93.22%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MASHHP----LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEAC 60
           MASHHP    LPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE C
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKSGVASQK-SSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           DWCRCERRCGRRGSAARK GVASQK SSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 7.42e-37
Identity = 67/104 (64.42%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 12  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GETAEA-IEACDWCRCERRCGRRG 71
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GE+ +A I  CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 72  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 4.41e-36
Identity = 66/104 (63.46%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 12  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GETAEAI-EACDWCRCERRCGRRG 71
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GE+ +AI   CDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRTRRPA 64

Query: 72  SAARKSGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           + A      SQK     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  AFAT---TTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL
Match: A0A6A2YJP5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilonHSYRG00021 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 1.35e-35
Identity = 62/114 (54.39%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 14  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCRCERRCGRRGSAAR 73
           VCC+CGDVGFP  +FRC  C HRFQHSYCSNYY E AE +E CDWCR E R  R+GS ++
Sbjct: 7   VCCMCGDVGFPDKIFRCNKCRHRFQHSYCSNYYSEFAEPVEVCDWCRSEERNSRQGSTSK 66

Query: 74  KSGVASQ--------------KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113
           KS   ++              K  G D++ ++SG  PSPR + RRYKLLKDVMC
Sbjct: 67  KSSTGNEAGILNRSEYSDQKIKQDGGDRKGKSSG-TPSPRPSTRRYKLLKDVMC 119

[Close]

BLAST of Csor.00g108140.m01 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-22
Identity = 58/130 (44.62%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 14  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCRCERRCGRRGSAAR 73
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 74  KSGVASQKSSGQDKRER------------------------------NSGGMPSPRVAPR 114
             G +S+K S   K E                               + GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

[Close]

BLAST of Csor.00g108140.m01 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-22
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 14  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEACDWCRCERRCGRRGSAAR 73
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I+ CDWC+CE +  R G+   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAK-SRTGAKHG 67

Query: 74  KSGVASQK-----------------------SSGQDKRERNSGGMPSPRVAPRRYKLLKD 114
            +G +S++                       SS     ++   G+PSPR A RRYKLLKD
Sbjct: 68  VNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKD 127

The following BLAST results are available for this feature:

BLAST of Csor.00g108140.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g108140.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597027.1	8.75e-81	100.00	hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028505.1	2.18e-76	97.35	hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022974251.1	2.65e-76	94.02	uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]	[more]
XP_022974249.1	1.86e-74	93.22	uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]	[more]
XP_023540879.1	5.64e-74	94.69	uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g108140.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAU2	1.28e-76	94.02	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IH20	8.99e-75	93.22	uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L5P1	7.42e-37	64.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A5D3DB67	4.41e-36	63.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A2YJP5	1.35e-35	54.39	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111398pilon...	[more]

BLAST of Csor.00g108140.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02070.1	1.4e-22	44.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G60520.1	4.0e-22	44.72	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..113
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 80..113 coord: 13..89
None	No IPR available	PANTHER	PTHR33779:SF16	SUBFAMILY NOT NAMED	coord: 80..113 coord: 13..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g108140	Csor.00g108140	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.CDS01	Csor.00g108140.m01.CDS01	CDS
Csor.00g108140.m01.CDS02	Csor.00g108140.m01.CDS02	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.start_codon01	Csor.00g108140.m01.start_codon01	start_codon

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.initial01	Csor.00g108140.m01.initial01	initial

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.intron01	Csor.00g108140.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.terminal01	Csor.00g108140.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01.stop_codon01	Csor.00g108140.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g108140.m01	Csor.00g108140.m01-protein	polypeptide