Csor.00g108080.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108080.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transmembrane protein
Location	Csor_Chr06: 7433838 .. 7434658 (-)
Sequence length	252
RNA-Seq Expression	Csor.00g108080.m01
Synteny	Csor.00g108080.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGTACTTCTCCATCTCTCTCTCTCTCTCTCTTTCGCTCTGTCTTCGTTGTCTTTCAATTCGTCTTGATTTCCGTCCACTTTCTTGGGGCTCTAATCGGTCCTTACTCGTGCGGTTGATTACGGGCTTTTCCTCCGCCAGAGGGTTTATTATTAATATTTTTTTGTTGCCATTGCCGGAATCACCCGTTTCTCAATTTGTTGCTTGTTTTTGTTTGAGTTTTGTTCTTTTCCACAATTGGAATATTGAAGGCACTCTTCAAATTTCTAACAACTATGTGTCTTCTCTGCGAATTCCGTTGGATTACTTTCCCTTTTCCTTAATCATCGGGAATCTTTTTCCCTCTTTCTTTTTAATGGTTCACTTCCATTTTCATTTTGATGGTTCACTTTTTCTTAACGCTTTTGGATTGGAGTAATTTATATGGTAGATTGAATTTCATTTATTTTTGAAATTTTGGGAACTTCTATGATTGTTTCTTTTGATCTATACTGAACAGAAACTACAAAAGTTCAGTCTTCCTCATTTGTTGTAATATGATAAATTTGACTGGTGTGTGTATGTGTGGGCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGA

mRNA sequence

ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGA

Coding sequence (CDS)

ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGA

Protein sequence

MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

Homology

[Close]

BLAST of Csor.00g108080.m01 vs. NCBI nr
Match: XP_023540347.1 (uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 hypothetical protein SDJN03_10201, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028499.1 hypothetical protein SDJN02_09680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (395), Expect = 7.35e-48
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV
Sbjct: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 83
          VGYSLKRRVNRWVSKLLRRLKDD
Sbjct: 61 VGYSLKRRVNRWVSKLLRRLKDD 83

[Close]

BLAST of Csor.00g108080.m01 vs. NCBI nr
Match: XP_022956291.1 (uncharacterized protein LOC111458016 [Cucurbita moschata])

HSP 1 Score: 155 bits (391), Expect = 3.00e-47
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV
Sbjct: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 83
          VGYSLKRRVNRWVSKLLRRLK+D
Sbjct: 61 VGYSLKRRVNRWVSKLLRRLKED 83

[Close]

BLAST of Csor.00g108080.m01 vs. NCBI nr
Match: XP_022974252.1 (uncharacterized protein LOC111472885 [Cucurbita maxima])

HSP 1 Score: 150 bits (379), Expect = 2.03e-45
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALR+GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV+
Sbjct: 1  MKSAALPSSVEALRSGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVL 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 83
          VGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VGYSLKRCVNRWVSKLLRRLKDD 83

[Close]

BLAST of Csor.00g108080.m01 vs. NCBI nr
Match: XP_038893067.1 (uncharacterized protein LOC120081950 [Benincasa hispida])

HSP 1 Score: 134 bits (336), Expect = 7.61e-39
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVE LRN GEGIASALSSSDQSRLLLATRPPRQVVSI TCSKLC +CFVAGV
Sbjct: 1  MKSGVSSSSVEVLRNRGEGIASALSSSDQSRLLLATRPPRQVVSIWTCSKLCAVCFVAGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKDD 83
          VVGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VVGYSLKRCVNRWVSKLLRRLKDD 84

[Close]

BLAST of Csor.00g108080.m01 vs. NCBI nr
Match: KGN51411.1 (hypothetical protein Csa_007923 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 9.70e-35
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 82
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL
Match: A0A6J1GW53 (uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC111458016 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.45e-47
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV
Sbjct: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 83
          VGYSLKRRVNRWVSKLLRRLK+D
Sbjct: 61 VGYSLKRRVNRWVSKLLRRLKED 83

[Close]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL
Match: A0A6J1I9S5 (uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 9.84e-46
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVV 60
          MKSAALPSSVEALR+GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV+
Sbjct: 1  MKSAALPSSVEALRSGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVL 60

Query: 61 VGYSLKRRVNRWVSKLLRRLKDD 83
          VGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VGYSLKRCVNRWVSKLLRRLKDD 83

[Close]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL
Match: A0A0A0KUK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 4.70e-35
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60
          MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRRVNRWVSKLLRRLKD 82
          VVGYSLKR VNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

[Close]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL
Match: W9RT53 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 3.41e-26
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 14 RNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWV 73
          R  EGI++ALSS DQSRLL++ RPPR VVS+ TCSKLC ICFV GVVVGY+LKRRV RW 
Sbjct: 29 RVNEGISAALSSPDQSRLLVS-RPPRNVVSLWTCSKLCAICFVVGVVVGYTLKRRVRRWA 88

Query: 74 SKLLRRLKDD 83
          S+LL+RLKDD
Sbjct: 89 SRLLKRLKDD 97

[Close]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL
Match: A0A314Z6R0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_06038 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 7.71e-26
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 8   SSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKR 67
           SS ++ R GEG+A+ALSSSDQSR+L   RP R VVS+ TCSKLC +CFVAG+VVGY+LKR
Sbjct: 27  SSFDSHRAGEGLAAALSSSDQSRILF-NRPARHVVSLWTCSKLCTLCFVAGIVVGYTLKR 86

Query: 68  RVNRWVSKLLRRLKDD 83
           RV RW S+LL+R+KD+
Sbjct: 87  RVRRWASRLLKRIKDE 101

[Close]

BLAST of Csor.00g108080.m01 vs. TAIR 10
Match: AT1G19240.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-14
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 33  LATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD 84
           L TRPP   VS+ TCSKLC + FVAGV VGY+LKRRV RW SKLLRR+KDD
Sbjct: 55  LVTRPP-SGVSVWTCSKLCAVFFVAGVFVGYTLKRRVRRWASKLLRRIKDD 104

The following BLAST results are available for this feature:

BLAST of Csor.00g108080.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g108080.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540347.1	7.35e-48	100.00	uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 ...	[more]
XP_022956291.1	3.00e-47	98.80	uncharacterized protein LOC111458016 [Cucurbita moschata]	[more]
XP_022974252.1	2.03e-45	96.39	uncharacterized protein LOC111472885 [Cucurbita maxima]	[more]
XP_038893067.1	7.61e-39	88.10	uncharacterized protein LOC120081950 [Benincasa hispida]	[more]
KGN51411.1	9.70e-35	81.93	hypothetical protein Csa_007923 [Cucumis sativus]	[more]

BLAST of Csor.00g108080.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GW53	1.45e-47	98.80	uncharacterized protein LOC111458016 OS=Cucurbita moschata OX=3662 GN=LOC1114580...	[more]
A0A6J1I9S5	9.84e-46	96.39	uncharacterized protein LOC111472885 OS=Cucurbita maxima OX=3661 GN=LOC111472885...	[more]
A0A0A0KUK2	4.70e-35	81.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G529450 PE=4 SV=1	[more]
W9RT53	3.41e-26	74.29	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003318 PE=4 SV=1	[more]
A0A314Z6R0	7.71e-26	67.11	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_060...	[more]

BLAST of Csor.00g108080.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19240.1	3.0e-14	72.55	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g108080	Csor.00g108080	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.CDS01	Csor.00g108080.m01.CDS01	CDS
Csor.00g108080.m01.CDS02	Csor.00g108080.m01.CDS02	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.stop_codon01	Csor.00g108080.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.terminal01	Csor.00g108080.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.intron01	Csor.00g108080.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.initial01	Csor.00g108080.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01.start_codon01	Csor.00g108080.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g108080.m01	Csor.00g108080.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane