Csor.00g107440.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g107440.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Cytochrome c
Location	Csor_Chr06: 6269854 .. 6272977 (-)
Sequence length	339
RNA-Seq Expression	Csor.00g107440.m01
Synteny	Csor.00g107440.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTTAGAGATTATCATTTCTTATTTATATGTTTGGGTTTCTTGCGATTCGAGATCGGAGGTTAGAGATCTCGAAGTCTCTATTAGTATTCTGAACATGTTCGTCCATCTTTGAGGATTCAGATGCTGAGTTTTGCTACGGTTGAATCGATCTGATCGTTTTCTCTGTTTTCCCCCAATATACTCTAGGAAACTAATACCTAGTATTGGCCTTCATCAAATTTTTCCATCGCCTACCAGGAACATGATATTTATTATTATATATTATTATTTTTTTTTTATGGAAATTTGACTTGGTGAAATGATTTTGGAAATACTTGGAAGCGTTTACTTTCATGAAACTAATAACAAATATATGGATTTTTTTTTATAAAAAAAAATCATTTAATACAGTAATTTTTTTATAACTCACTAATTATTCATTAACTTGGTAATGATAAATTAGTACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGGCGTTGGCCTTGGTGAGTAGAAATCATGATTAAGGTGAACAATCGATTTTAGTCAATAGTATATGGCTTCTTACTTTTTATTTTTGCTATTAGTTTTTTAGCTCCAGTTTTTGTGCTATTTTACGGAAGTTGTGTTAGATTTGCAGTTACTTTTATTCTGTTTCAATTGGGTTTCATTATGTTTTGAGTTGTGGATGTACGAAGCTTATTGTTGCGTAATGTTTTGACTTTTTTATTTTTTATTTTGAGTAGATTTTCATCCCTCCCTTTCGCTTTTTCATGAGGAGAAATCAGCTTTTCTATATTCATATGTAAGTAGACTCTAAGACAAGCAATGGCACTTGGAATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGATTACTTGCTTAACCCCAAGAAGGTAACTCCCGTCTATTTCTCAACACTTGTGGCCTTGTAGTATTTGATTTGAAGCTAGTTTATTTCCCTGCGTTGTCCTCCAGATGTTCTAATTGTTGATTCATTGATATTACTGTGAATTCACCTAAATAGGCTTGCCGTGTTCCTTACTAGCCTTTTTCTTCATAATGCCTCTTCAACTGATCCCCAAGTGCTGAAATGTTTTTTGCAACTTTGATCAACATGTTCGTCTTTTTCCATCTTACAAGTAGCCTGAACTATAAAAATATGTACATTCCTTTTCTACAATAATAGCCAAAAGTTTTGAAGAATGGTCAACCACCATTTGCGTCACAAATCTCCCTTCACTTGGAGTTTCAATCATAATTTAAGCAAAAATAAAACATACAAAAATTGCCTCTTATATCTGAATATGCTTCACACAAGCACGTTAATAGTTTCTTGAAACATGATTGATTTCCACAATTTCCCTCGATTCCTTTACAAGTCTCCTTTGGGAAAATCACTTGCCCTTAAATCTATCTTTTGTGACATGATTAACTTTTTTGGCATCGATGCTATTAGGAACACTCTGGTCCCAATGTATCGTTGTGGTAAATCCATTTAGGCATTAGTTATGTGTCTTCCCTTGCTCTCTTCGCTTCTTCTTGCAGCTTAACAAAGTTCGTCCTGAACCCTTGCTTAGGGATTCCTCTCAATTGAAATCTTCATTTGCCCTCAAGTTTCAATGACATAATTAACAGAGGAAGTTTGGAAAATCCCAGTCTATTCTTCTCAGTTTGGCTATAAAATGAAAAATTCAAAATTTCCAAAGCAAGGGAAATTCTCTATGGGAACTTTTGAGTTGAAGTGTTAACATTCACTCAAATCCTTTGATAATGTGCCTTATGATCTCACTGTGTCTATGAACACCCTCATTTTCAGCACTTAAAACCGTTTTCTTTATTCCTTGATGGTCATCTTTCTAATAGTGATGGCTTTATGGCCACAATGTTTGATGGTTTATTTTTTGCCTATTTGTTGGCTTGAAAGGAAAGGAACAAATCTTCTGGTTATGGCGAATAAAATCCCATGTTATACTTGTTGTTTTATCATTGAACCATGTTTGTTAGGTTATGATTCTTAAGTTTGGATATGTTAAAGCTTGCGTTGGGAGTTTATTTTAAGAAACAGGGGTCAGTATACTATTTGAATTGTGCTGATAAATGGGGTTTAGTTTGTGTAACCTATGTTCATCTTTTTTGTTTTGGTTTGGGATTTATAAGAAATTTAAATAGTTTACATGTTTACCATTTTTTGTATAGAAAATTCATTTCTACATTAAATTTGGTAAAATTATCATAATATTTTTCTTTTGTAATCAGCCAGTACAGTAAGTAGTTTACTACCGTTGTCAACCGTGTAATCTTTTTGAATAATTATTTTGTAATGTGAATATTCAACTACTTTTGTAATTGCTTCTCAAATATTCACACCAAGGTGCGATGAAGTGTGCATAAATTCTTTCGAACAGACCAAGCTTTCTGAACCATTGTTATCTTTGTAGTTCTTTCTTGATGTTAATTTTGTGTTTCATCCCTTATGAAATTGTCTTACCTTTCTGGAAAAACTTTTGGGAACATCACCATTTTTCAAACTTCAGGAAGGAAACCTCCAAATTTGCCCATCCAACTAATTTACAAACCCTCCAATCATCTTCTTTTTTGAAAATGCATCCTCTTTGTGTGGAATCTGCATTAACTCTAGCGCTTATGATTGCTATGGTTTATAGAGGAATGTGAAGGTAATTGTAAATTTGGAGGAATGAAAAGAATACTGAGCTTGGTTGATGAATTTTGTTTGTCCTTCTTTGATCAATGATCACTTGTGTCTCTTTCAAAGTTTTAGGAGATGGTAAATATTCTAACAAATAGTTGGGGGATGTGTGTATCCATTGTACAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAA

mRNA sequence

ATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAA

Coding sequence (CDS)

ATGGCCAGCTTTGACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAGGGTGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAA

Protein sequence

MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA

Homology

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot
Match: P00052 (Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-59
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS AN
Sbjct: 1   ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot
Match: P00051 (Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot
Match: P62772 (Cytochrome c OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot
Match: P62773 (Cytochrome c OS=Brassica oleracea OX=3712 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-59
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 2   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 61
           ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           KN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot
Match: Q9T0G2 (Cytochrome c-2 OS=Arabidopsis thaliana OX=3702 GN=CYTC-2 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-57
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. NCBI nr
Match: XP_022932892.1 (cytochrome c [Cucurbita moschata] >XP_023520614.1 cytochrome c [Cucurbita pepo subsp. pepo] >KAG6596958.1 hypothetical protein SDJN03_10138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (603), Expect = 1.11e-78
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Csor.00g107440.m01 vs. NCBI nr
Match: XP_022973349.1 (cytochrome c-like [Cucurbita maxima])

HSP 1 Score: 235 bits (599), Expect = 4.53e-78
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGR+SGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRKSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Csor.00g107440.m01 vs. NCBI nr
Match: XP_022930036.1 (cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima] >XP_023530772.1 cytochrome c [Cucurbita pepo subsp. pepo] >KAG6601704.1 hypothetical protein SDJN03_06937, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032456.1 hypothetical protein SDJN02_06504 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233 bits (595), Expect = 1.85e-77
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. NCBI nr
Match: NP_001363126.1 (cytochrome c [Vigna radiata] >XP_014496567.1 cytochrome c [Vigna radiata var. radiata] >XP_017416997.1 PREDICTED: cytochrome c [Vigna angularis] >BAT83489.1 hypothetical protein VIGAN_04064500 [Vigna angularis var. angularis] >KAG2404190.1 Cytochrome c [Vigna angularis] >KOM36983.1 hypothetical protein LR48_Vigan03g036400 [Vigna angularis])

HSP 1 Score: 233 bits (593), Expect = 3.73e-77
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS A
Sbjct: 1   MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. NCBI nr
Match: XP_038893188.1 (cytochrome c [Benincasa hispida])

HSP 1 Score: 232 bits (591), Expect = 1.72e-76
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 26  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 85

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct: 86  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 137

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL
Match: A0A6J1EY20 (cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111439394 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 5.38e-79
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL
Match: A0A6J1IEB6 (cytochrome c-like OS=Cucurbita maxima OX=3661 GN=LOC111471907 PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 2.19e-78
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGR+SGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRKSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL
Match: A0A6J1JWC5 (cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 8.94e-78
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL
Match: A0A6J1EPS9 (cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 8.94e-78
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL
Match: A0A1S3TS68 (cytochrome c OS=Vigna radiata var. radiata OX=3916 GN=LOC106758147 PE=3 SV=1)

HSP 1 Score: 233 bits (593), Expect = 1.81e-77
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYS A
Sbjct: 1   MASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. TAIR 10
Match: AT4G10040.1 (cytochrome c-2 )

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-58
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. TAIR 10
Match: AT1G22840.1 (CYTOCHROME C-1 )

HSP 1 Score: 221.1 bits (562), Expect = 4.5e-58
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
           MASFDEAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1   MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 113
           NKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Csor.00g107440.m01 vs. TAIR 10
Match: AT1G22840.2 (CYTOCHROME C-1 )

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-40
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60
          MASFDEAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTTAGYSYSAA
Sbjct: 1  MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61 NKNMAVIWEEKTLYDYLLNPKKYI 85
          NKN AV WEEK LYDYLLNPKK +
Sbjct: 61 NKNKAVEWEEKALYDYLLNPKKVL 84

The following BLAST results are available for this feature:

BLAST of Csor.00g107440.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P00052	1.8e-59	97.30	Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1	[more]
P00051	2.3e-59	98.20	Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1	[more]
P62772	4.0e-59	98.20	Cytochrome c OS=Brassica napus OX=3708 PE=1 SV=1	[more]
P62773	4.0e-59	98.20	Cytochrome c OS=Brassica oleracea OX=3712 PE=1 SV=1	[more]
Q9T0G2	2.2e-57	93.75	Cytochrome c-2 OS=Arabidopsis thaliana OX=3702 GN=CYTC-2 PE=1 SV=1	[more]

BLAST of Csor.00g107440.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932892.1	1.11e-78	100.00	cytochrome c [Cucurbita moschata] >XP_023520614.1 cytochrome c [Cucurbita pepo s...	[more]
XP_022973349.1	4.53e-78	99.11	cytochrome c-like [Cucurbita maxima]	[more]
XP_022930036.1	1.85e-77	98.21	cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima...	[more]
NP_001363126.1	3.73e-77	97.32	cytochrome c [Vigna radiata] >XP_014496567.1 cytochrome c [Vigna radiata var. ra...	[more]
XP_038893188.1	1.72e-76	97.32	cytochrome c [Benincasa hispida]	[more]

BLAST of Csor.00g107440.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY20	5.38e-79	100.00	cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111439394 PE=3 SV=1	[more]
A0A6J1IEB6	2.19e-78	99.11	cytochrome c-like OS=Cucurbita maxima OX=3661 GN=LOC111471907 PE=3 SV=1	[more]
A0A6J1JWC5	8.94e-78	98.21	cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1	[more]
A0A6J1EPS9	8.94e-78	98.21	cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1	[more]
A0A1S3TS68	1.81e-77	97.32	cytochrome c OS=Vigna radiata var. radiata OX=3916 GN=LOC106758147 PE=3 SV=1	[more]

BLAST of Csor.00g107440.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10040.1	1.6e-58	93.75	cytochrome c-2	[more]
AT1G22840.1	4.5e-58	92.86	CYTOCHROME C-1	[more]
AT1G22840.2	1.9e-40	89.29	CYTOCHROME C-1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 101..109 score: 78.4 coord: 84..94 score: 81.56 coord: 22..29 score: 83.53 coord: 65..81 score: 58.88 coord: 35..50 score: 75.76 coord: 51..61 score: 61.51
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 1..112
IPR009056	Cytochrome c-like domain	PFAM	PF00034	Cytochrom_C	coord: 13..109 e-value: 9.6E-14 score: 52.3
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 10..111 score: 16.013771
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 1..112 e-value: 4.8E-45 score: 154.6
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 9..109
None	No IPR available	PANTHER	PTHR11961:SF41	BNAA07G10260D PROTEIN	coord: 1..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g107440	Csor.00g107440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.CDS01	Csor.00g107440.m01.CDS01	CDS
Csor.00g107440.m01.CDS02	Csor.00g107440.m01.CDS02	CDS
Csor.00g107440.m01.CDS03	Csor.00g107440.m01.CDS03	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.stop_codon01	Csor.00g107440.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.terminal01	Csor.00g107440.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.intron01	Csor.00g107440.m01.intron01	intron
Csor.00g107440.m01.intron02	Csor.00g107440.m01.intron02	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.internal01	Csor.00g107440.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.initial01	Csor.00g107440.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01.start_codon01	Csor.00g107440.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g107440.m01	Csor.00g107440.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010336	gibberellic acid homeostasis
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0070469	respirasome
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding