
Csor.00g096050.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTAGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTAGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTAGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVHTRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVGEVEVAKAAAVTEGVARVEVDPRLQLQ Homology
BLAST of Csor.00g096050.m01 vs. NCBI nr
Match: XP_022935160.1 (uncharacterized protein LOC111442115 [Cucurbita moschata] >KAG6580661.1 hypothetical protein SDJN03_20663, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 277 bits (708), Expect = 1.35e-93 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. NCBI nr
Match: XP_023528786.1 (uncharacterized protein LOC111791618 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 275 bits (702), Expect = 1.11e-92 Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. NCBI nr
Match: XP_022983153.1 (uncharacterized protein LOC111481791 [Cucurbita maxima]) HSP 1 Score: 265 bits (677), Expect = 7.47e-89 Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. NCBI nr
Match: XP_004137866.1 (uncharacterized protein LOC101207081 [Cucumis sativus] >KGN59049.1 hypothetical protein Csa_002138 [Cucumis sativus]) HSP 1 Score: 228 bits (582), Expect = 2.05e-74 Identity = 121/146 (82.88%), Postives = 130/146 (89.04%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. NCBI nr
Match: XP_008442790.1 (PREDICTED: uncharacterized protein LOC103486565 [Cucumis melo] >KAA0043928.1 uncharacterized protein E6C27_scaffold236G002680 [Cucumis melo var. makuwa] >TYK25211.1 uncharacterized protein E5676_scaffold352G003410 [Cucumis melo var. makuwa]) HSP 1 Score: 226 bits (576), Expect = 1.79e-73 Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. ExPASy TrEMBL
Match: A0A6J1F9T7 (uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC111442115 PE=4 SV=1) HSP 1 Score: 277 bits (708), Expect = 6.55e-94 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. ExPASy TrEMBL
Match: A0A6J1J6Y7 (uncharacterized protein LOC111481791 OS=Cucurbita maxima OX=3661 GN=LOC111481791 PE=4 SV=1) HSP 1 Score: 265 bits (677), Expect = 3.62e-89 Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. ExPASy TrEMBL
Match: A0A0A0LDV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748780 PE=4 SV=1) HSP 1 Score: 228 bits (582), Expect = 9.91e-75 Identity = 121/146 (82.88%), Postives = 130/146 (89.04%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. ExPASy TrEMBL
Match: A0A5A7TM42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003410 PE=4 SV=1) HSP 1 Score: 226 bits (576), Expect = 8.69e-74 Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. ExPASy TrEMBL
Match: A0A1S3B6J5 (uncharacterized protein LOC103486565 OS=Cucumis melo OX=3656 GN=LOC103486565 PE=4 SV=1) HSP 1 Score: 226 bits (576), Expect = 8.69e-74 Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. TAIR 10
Match: AT3G10020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 131.3 bits (329), Expect = 6.1e-31 Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 0
BLAST of Csor.00g096050.m01 vs. TAIR 10
Match: AT3G10020.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25 Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following single feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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