Csor.00g094720.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g094720.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	Csor_Chr14: 570573 .. 571186 (+)
Sequence length	360
RNA-Seq Expression	Csor.00g094720.m01
Synteny	Csor.00g094720.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCAGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTAAGCTGACTATCCTCTTCAAACCACTGGACTTTTCCCAATTCTGTTTCACCTGTTGAAAATATCGTTTACATCTGAAAAGCTTAGAGAAATTCAGAACAATAAATTCATGTGAGCTTGCGAGTTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGGTGAGCTTTTATTTCTTTTTTCTTTTCAAAGAAAAGTTTCTTTCTTTTACCTTCTATATCCAAGTTTAGGGGTTTTATTTATTGATTTATTTTCTGTTTTTCCAGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGA

mRNA sequence

ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCAGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGA

Coding sequence (CDS)

ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCAGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGA

Protein sequence

MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL

Homology

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 4   SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 63
           S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           K QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILNKGIL++IGV+IGKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

[Close]

BLAST of Csor.00g094720.m01 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228 bits (580), Expect = 6.03e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225 bits (574), Expect = 4.96e-74
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPA APICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 211 bits (538), Expect = 1.54e-68
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASS+ ILSSSLLPARAPIC +QDGRLCLFQ+GSVRANN R+R PFRVQAAKPPAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 199 bits (507), Expect = 8.19e-64
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. NCBI nr
Match: XP_023528739.1 (light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (475), Expect = 3.28e-59
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
          MASSATILSSSLLPA APICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1  MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61 KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL 99
          KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL
Sbjct: 61 KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL 99

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.92e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.92e-75
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 199 bits (507), Expect = 3.97e-64
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 2.00e-55
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQAA-KPPAGVE 60
           MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVE
Sbjct: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119
           LPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.57e-52
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGS-VRANNRRARAPFRVQAA-KPPAGVE 60
           MASS+ ILSS L PARA   ++QDGR  LFQ+GS VRANN RAR  FRVQAA KPPAGVE
Sbjct: 1   MASSSVILSS-LPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

[Close]

BLAST of Csor.00g094720.m01 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-26
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 4   SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 63
           S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           K QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILNKGIL++IGV+IGKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of Csor.00g094720.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.2e-24	57.14	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Csor.00g094720.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934608.1	6.03e-75	100.00	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_023526506.1	4.96e-74	99.16	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp....	[more]
XP_038905156.1	1.54e-68	89.92	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022145630.1	8.19e-64	85.71	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_023528739.1	3.28e-59	98.99	light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita pe...	[more]

BLAST of Csor.00g094720.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0W8	2.92e-75	100.00	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	2.92e-75	100.00	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1CV10	3.97e-64	85.71	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A0A0LAI0	2.00e-55	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	1.57e-52	81.82	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Csor.00g094720.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	8.3e-26	57.14	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g094720	Csor.00g094720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.CDS01	Csor.00g094720.m01.CDS01	CDS
Csor.00g094720.m01.CDS02	Csor.00g094720.m01.CDS02	CDS
Csor.00g094720.m01.CDS03	Csor.00g094720.m01.CDS03	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.start_codon01	Csor.00g094720.m01.start_codon01	start_codon

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.initial01	Csor.00g094720.m01.initial01	initial

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.intron01	Csor.00g094720.m01.intron01	intron
Csor.00g094720.m01.intron02	Csor.00g094720.m01.intron02	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.internal01	Csor.00g094720.m01.internal01	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.terminal01	Csor.00g094720.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01.stop_codon01	Csor.00g094720.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g094720.m01	Csor.00g094720.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane