Csor.00g061180.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g061180.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DYW_deaminase domain-containing protein
Location	Csor_Chr03: 5836837 .. 5837307 (-)
Sequence length	471
RNA-Seq Expression	Csor.00g061180.m01
Synteny	Csor.00g061180.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATCGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

mRNA sequence

ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATCGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

Coding sequence (CDS)

ATGGACCGCCAAAGCACCAAGCGACCAAGAGAATCATCAGCGGAACAATCTTCGCTGCCGGAGATCGGTAATGGAAAGAAGCAGCGCCTCCACGGCGGCAGTGACGACGCCAAGGAACCTCTTCCTAGAACATTCTTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGAGAGCCTGATTTATTCCGAATCCGAGGACTGGAAATTGGACGATGTTTTCTTCACCTCCTTTTACAATGGACTATCCACCGCCGATGCTACTACGATTGGGACGGAGTTGTCGTCGGGGCAATTGGTTTGGAGTAATCTGCCGGATCCTTGGGAGGCGGAATACGAGGCACAAGTGCCGCCGACGACGCTGGACGACGGCGGAGGAGGACAGGCAGGGGAGGGGATCGATTGTATCTGGAGCTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGAGCGTTGTAG

Protein sequence

MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQVPPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL

Homology

[Close]

BLAST of Csor.00g061180.m01 vs. NCBI nr
Match: KAG6603846.1 (hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (827), Expect = 2.04e-111
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL
Sbjct: 1   MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60

Query: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156

[Close]

BLAST of Csor.00g061180.m01 vs. NCBI nr
Match: XP_022977867.1 (uncharacterized protein LOC111478029 [Cucurbita maxima])

HSP 1 Score: 313 bits (803), Expect = 9.32e-108
Identity = 151/156 (96.79%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           M+RQSTKRPRESSAEQSSL EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1   MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60

Query: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIYSESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           PPTTLDDGGGGQAGEG+DCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156

[Close]

BLAST of Csor.00g061180.m01 vs. NCBI nr
Match: KGN49015.1 (hypothetical protein Csa_004415 [Cucumis sativus])

HSP 1 Score: 181 bits (459), Expect = 2.79e-55
Identity = 102/169 (60.36%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MDRQSTKRPRESSA---------EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL- 60
           M+R +TKRPRESS+         +QSSLPEI N K+Q  H   D+A+E  P T FDFDL 
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60

Query: 61  SFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
           SFGVFDFPWLK+ LIYS+S+DWK +DVFFTS YNG STAD   I T L+ G      LPD
Sbjct: 61  SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120

Query: 121 PWEAEYEAQVPPT---TLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           PWE +YEAQ PP    +LD  GG Q GE +DCIW S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Csor.00g061180.m01 vs. NCBI nr
Match: KAG6594718.1 (hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (426), Expect = 3.27e-50
Identity = 97/172 (56.40%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 1   MDRQSTKRPRESSA---------------EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTF 60
           MDR++ KRPRESS+               EQSS PEIGNG+K++   G            
Sbjct: 1   MDRRNAKRPRESSSSSSSSSSSSSAGVRNEQSSQPEIGNGEKRQHVEGFG--------RL 60

Query: 61  FDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVW 120
           FD DLSFGVFDFPWLK+SLIYS+ EDWK++DVFFTSF    +TAD     TE S  QLVW
Sbjct: 61  FDLDLSFGVFDFPWLKDSLIYSKYEDWKVEDVFFTSFDGVSTTADIAL--TEWSE-QLVW 120

Query: 121 SNLPDPWEAEYEAQVPPTTLD----DGGGGQAGEGIDCIWSSLLNQPLQQGS 153
            NLPDPWE EYEA V P T      + G G AGEG+DC+W+SLLNQPLQQGS
Sbjct: 121 CNLPDPWEEEYEAHVAPATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGS 161

[Close]

BLAST of Csor.00g061180.m01 vs. NCBI nr
Match: KAA0025593.1 (hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK12468.1 hypothetical protein E5676_scaffold255G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 4.17e-46
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 15  EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL-SFGVFDFPWLKESLIYSESEDWK 74
           +QSS PEI N K+Q  H    D +   P T FDFDL SFGVFDFPWLK+ LIYS+S+DWK
Sbjct: 3   DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62

Query: 75  LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
            +DVFFTS YNG S+     I T L+ G   ++  LPDPWE +YEAQ    PP +LD  G
Sbjct: 63  FEDVFFTSVYNGASST--FDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122

Query: 135 GGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           G Q GEG+DCIW S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143

[Close]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL
Match: A0A6J1IJM6 (uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029 PE=4 SV=1)

HSP 1 Score: 313 bits (803), Expect = 4.51e-108
Identity = 151/156 (96.79%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MDRQSTKRPRESSAEQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDLSFGVFDFPWL 60
           M+RQSTKRPRESSAEQSSL EIGNGKKQRLHGGSDDAKEPLPRTF+DFDLSFGVFDFPWL
Sbjct: 1   MERQSTKRPRESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYDFDLSFGVFDFPWL 60

Query: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQV 120
           KESLIYSESEDWKLDDVFFTSFYNGLSTADAT+IGTELSSGQLVWSNLPDPWEAEYEAQV
Sbjct: 61  KESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWSNLPDPWEAEYEAQV 120

Query: 121 PPTTLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           PPTTLDDGGGGQAGEG+DCIWSSLLNQPLQQGSRAL
Sbjct: 121 PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156

[Close]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL
Match: A0A0A0KH39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.35e-55
Identity = 102/169 (60.36%), Postives = 118/169 (69.82%), Query Frame = 0


Query: 1   MDRQSTKRPRESSA---------EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL- 60
           M+R +TKRPRESS+         +QSSLPEI N K+Q  H   D+A+E  P T FDFDL 
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSH---DNAQESSPGTSFDFDLL 60

Query: 61  SFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATTIGTELSSGQLVWSNLPD 120
           SFGVFDFPWLK+ LIYS+S+DWK +DVFFTS YNG STAD   I T L+ G      LPD
Sbjct: 61  SFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTAD---IATPLTIGTAFTEFLPD 120

Query: 121 PWEAEYEAQVPPT---TLDDGGGGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           PWE +YEAQ PP    +LD  GG Q GE +DCIW S+LNQPLQQGS AL
Sbjct: 121 PWEKDYEAQAPPPPPPSLD--GGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL
Match: A0A5A7SLQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00440 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.02e-46
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 15  EQSSLPEIGNGKKQRLHGGSDDAKEPLPRTFFDFDL-SFGVFDFPWLKESLIYSESEDWK 74
           +QSS PEI N K+Q  H    D +   P T FDFDL SFGVFDFPWLK+ LIYS+S+DWK
Sbjct: 3   DQSSPPEIANVKRQHSHDA--DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWK 62

Query: 75  LDDVFFTSFYNGLSTADATTIGTELSSGQLVWSN-LPDPWEAEYEAQV---PPTTLDDGG 134
            +DVFFTS YNG S+     I T L+ G   ++  LPDPWE +YEAQ    PP +LD  G
Sbjct: 63  FEDVFFTSVYNGASST--FDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPSLD--G 122

Query: 135 GGQAGEGIDCIWSSLLNQPLQQGSRAL 156
           G Q GEG+DCIW S+LNQPLQQGS AL
Sbjct: 123 GEQGGEGMDCIWRSVLNQPLQQGSSAL 143

[Close]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL
Match: A0A6J1BUL5 (uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005508 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.65e-21
Identity = 70/136 (51.47%), Postives = 79/136 (58.09%), Query Frame = 0


Query: 1   MDRQSTKRPRESSAEQ--------------SSLPEIGNGKKQRLHGGSDDAKEPLPRTFF 60
           MDR +TKR RES +                SS PEIGN KKQ   GG          T  
Sbjct: 1   MDRHNTKRARESLSASAASSDDAVSYERSYSSPPEIGNVKKQHTDGGGGQGA-----TGR 60

Query: 61  DFDLSFGVFDFPWLKESLIYSESEDWKLDDVFFTSF-YNGLSTADAT-TIGTELS--SGQ 115
             DL   VFDFPWLK+SLI S+SEDWK +DVFFTS   NG STAD T TIGT  +  SGQ
Sbjct: 61  SSDLD--VFDFPWLKDSLI-SKSEDWKFEDVFFTSLDSNGASTADDTLTIGTAFTELSGQ 120

[Close]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL
Match: A0A6P9ENN9 (uncharacterized protein LOC108996550 isoform X2 OS=Juglans regia OX=51240 GN=LOC108996550 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.49e-16
Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 24  NGKKQRLHGG----SDDAKEPLPRTFFDFDLSFGVFDFPWLKESLIYSESEDWKLDDVFF 83
           + KKQ L G     ++D    + +      L  GVFDFPWLK+ +I S+SEDW+ +D F 
Sbjct: 28  SAKKQDLKGSDFRETNDEISNMKKLDSSIALDVGVFDFPWLKDGMI-SKSEDWRFEDAFS 87

Query: 84  TSFYNGLSTADATTIGTELSSGQLVWSNLPDPWEAEYEAQVPPTTLDDG-------GGGQ 143
           +S    +   ++TT      SGQ +      P E  Y   +P    DD        G G 
Sbjct: 88  SSL---IPHDNSTTTAAIEFSGQCLCRT---PEEVPY---LPENKFDDSLCWAVPEGDGL 147

Query: 144 AGEGIDCIWSSLLNQPLQQG 152
             EG+DCIWSSLL+QPLQQG
Sbjct: 148 ETEGLDCIWSSLLSQPLQQG 157

The following BLAST results are available for this feature:

BLAST of Csor.00g061180.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g061180.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603846.1	2.04e-111	100.00	hypothetical protein SDJN03_04455, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977867.1	9.32e-108	96.79	uncharacterized protein LOC111478029 [Cucurbita maxima]	[more]
KGN49015.1	2.79e-55	60.36	hypothetical protein Csa_004415 [Cucumis sativus]	[more]
KAG6594718.1	3.27e-50	56.40	hypothetical protein SDJN03_11271, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025593.1	4.17e-46	59.18	hypothetical protein E6C27_scaffold253G00830 [Cucumis melo var. makuwa] >TYK1246...	[more]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJM6	4.51e-108	96.79	uncharacterized protein LOC111478029 OS=Cucurbita maxima OX=3661 GN=LOC111478029...	[more]
A0A0A0KH39	1.35e-55	60.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1	[more]
A0A5A7SLQ6	2.02e-46	59.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1BUL5	3.65e-21	51.47	uncharacterized protein LOC111005508 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6P9ENN9	9.49e-16	38.57	uncharacterized protein LOC108996550 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Csor.00g061180.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g061180	Csor.00g061180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g061180.m01.CDS01	Csor.00g061180.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g061180.m01.single01	Csor.00g061180.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g061180.m01.stop_codon01	Csor.00g061180.m01.stop_codon01	stop_codon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g061180.m01.start_codon01	Csor.00g061180.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g061180.m01	Csor.00g061180.m01-protein	polypeptide