Csor.00g059710.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g059710.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 6501968 .. 6502210 (+)
Sequence length	243
RNA-Seq Expression	Csor.00g059710.m01
Synteny	Csor.00g059710.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGTACGGCGGAAGAAAAGAGTGGCGCCACCACTAAAACCGCCTCTGCCGACGAAGAAGACTGCGCGTGGAAATCAGAGAGATGGGGATCCGGTGTAACGGTGTCCTTTAGGATGACCTGGGTTAAGTTTAATCGACGGCTTCGGGTTAGGGTTTCGCCAATTGACACGTGCGAAAAGATCCTTCCAGCTGTCCACGTTTTACTGGATCAGATTTGTGACGAAGCCAAACTTCGATGA

mRNA sequence

ATGCAGTGTACGGCGGAAGAAAAGAGTGGCGCCACCACTAAAACCGCCTCTGCCGACGAAGAAGACTGCGCGTGGAAATCAGAGAGATGGGGATCCGGTGTAACGGTGTCCTTTAGGATGACCTGGGTTAAGTTTAATCGACGGCTTCGGGTTAGGGTTTCGCCAATTGACACGTGCGAAAAGATCCTTCCAGCTGTCCACGTTTTACTGGATCAGATTTGTGACGAAGCCAAACTTCGATGA

Coding sequence (CDS)

ATGCAGTGTACGGCGGAAGAAAAGAGTGGCGCCACCACTAAAACCGCCTCTGCCGACGAAGAAGACTGCGCGTGGAAATCAGAGAGATGGGGATCCGGTGTAACGGTGTCCTTTAGGATGACCTGGGTTAAGTTTAATCGACGGCTTCGGGTTAGGGTTTCGCCAATTGACACGTGCGAAAAGATCCTTCCAGCTGTCCACGTTTTACTGGATCAGATTTGTGACGAAGCCAAACTTCGATGA

Protein sequence

MQCTAEEKSGATTKTASADEEDCAWKSERWGSGVTVSFRMTWVKFNRRLRVRVSPIDTCEKILPAVHVLLDQICDEAKLR

Homology

[Close]

BLAST of Csor.00g059710.m01 vs. NCBI nr
Match: KAG6603993.1 (hypothetical protein SDJN03_04602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (420), Expect = 9.07e-52
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MQCTAEEKSGATTKTASADEEDCAWKSERWGSGVTVSFRMTWVKFNRRLRVRVSPIDTCE 60
          MQCTAEEKSGATTKTASADEEDCAWKSERWGSGVTVSFRMTWVKFNRRLRVRVSPIDTCE
Sbjct: 1  MQCTAEEKSGATTKTASADEEDCAWKSERWGSGVTVSFRMTWVKFNRRLRVRVSPIDTCE 60

Query: 61 KILPAVHVLLDQICDEAKLR 80
          KILPAVHVLLDQICDEAKLR
Sbjct: 61 KILPAVHVLLDQICDEAKLR 80

The following BLAST results are available for this feature:

BLAST of Csor.00g059710.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g059710.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603993.1	9.07e-52	100.00	hypothetical protein SDJN03_04602, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g059710.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g059710.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g059710	Csor.00g059710	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g059710.m01.CDS01	Csor.00g059710.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g059710.m01.single01	Csor.00g059710.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g059710.m01.start_codon01	Csor.00g059710.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g059710.m01.stop_codon01	Csor.00g059710.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g059710.m01	Csor.00g059710.m01-protein	polypeptide